Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8299331.1

Orthogroup ID

OG0001632

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 590

Gene Structure 590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8299331.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 439 bp

atgttgtattgtgttctcctaattttcagttattgcatccgggttaatccctccttggttgaggactgggatccagacaattgggtatgcaaatcatgtgaacagggcaatggtatgcgttctccaaactctagtattaaggaagacacattagagtcatcaaccggtagaggccactatgatggcatgcattcagcaggtcccagcaaaaattgtaatggttcaaggtggcaagctcactctaagaaacaaaagcctgttgtgaatgaaaaagttaagttcattacaaatgaagaagtcaggagactatctttggcagacccgcctcagaagactcttgttaggtacaaaactattactccaaagtctcctatttcttcgggggttaaagcaaatcctagctttatacgttcagaaattgcgatgcctagtggacatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

146

Amino Acids

16.31

Weight (kDa)

9.16

Isoelectric Point (pI)

56.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61090 AT5G61090 AT5G61120 AT5G61120 AT5G61120
fragaria_vesca	FvH4_4g13540 FvH4_4g13550 FvH4_5g13930 FvH4_5g13940 FvH4_5g13940 FvH4_5g13940
malus_domestica	MD06G1202200.v1.1 MD14G1211300.v1.1
prunus_persica	Prupe.5G204200_v2.0.a1 Prupe.5G204200_v2.0.a1 Prupe.5G204400_v2.0.a1
pyrus_communis	pycom06g17820
rosa_chinensis	RchiOBHm_Chr4g0414551 RchiOBHm_Chr4g0414561 RchiOBHm_Chr4g0414571 RchiOBHm_Chr7g0183021
rosa_laevigata	RLG00000005087
rosa_multiflora	Rmu_co8299331.1_g000001 Rmu_sc0000808.1_g000022 Rmu_sc0001063.1_g000013 Rmu_sc0005196.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240320 Rroxscaffold_3G00240450 Rroxscaffold_3G00270840
rosa_rugosa	Rorug06G0451800
rosa_samantha	Rh4AG186600 Rh4AG186700 Rh4BG173800 Rh4BG184200 Rh4CG197200 Rh4CG197500 Rh4DG181800 Rh4DG181900 Rh4DG183300 Rh7AG055300 Rh7AG324400 Rh7BG054700 Rh7BG309400 Rh7CG056000 Rh7CG341300 Rh7DG054800
rosa_wichuraiana	Rw4G015750 Rw7G027480 Rw7G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	188
AciI	CCGC	1 cut(s)	323
AclWI	GGATC	2 cut(s)	65, 78
AfaI	GTAC	1 cut(s)	347
AgeI	ACCGGT	1 cut(s)	164
AgsI	TTSAA	1 cut(s)	225
AluBI	AGCT	2 cut(s)	236, 402
AluI	AGCT	2 cut(s)	236, 402
Alw26I	GTCTC	2 cut(s)	298, 372
AlwI	GGATC	2 cut(s)	65, 78
AoxI	GGCC	1 cut(s)	172
AsiGI	ACCGGT	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	200
AsuC2I	CCSGG	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	200
BamHI	GGATCC	1 cut(s)	70
BbsI	GAAGAC	2 cut(s)	150, 338
BccI	CCATC	1 cut(s)	176
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	2 cut(s)	298, 372
BfaI	CTAG	3 cut(s)	132, 399, 429
BfuAI	ACCTGC	1 cut(s)	188
Bme1390I	CCNGG	1 cut(s)	41
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	2 cut(s)	72, 202
BmrFI	CCNGG	1 cut(s)	41
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	2 cut(s)	45, 414
BmuI	ACTGGG	1 cut(s)	76
BpiI	GAAGAC	2 cut(s)	150, 338
BpuMI	CCSGG	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	164
BsaXI	ACNNNNNCTCC	2 cut(s)	343, 373
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	71
Bse3DI	GCAATG	1 cut(s)	115
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	36
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	1 cut(s)	71
BseYI	CCCAGC	1 cut(s)	203
BshFI	GGCC	1 cut(s)	174
BshTI	ACCGGT	1 cut(s)	164
BsiSI	CCGG	2 cut(s)	40, 165
BslFI	GGGAC	1 cut(s)	186
BsmAI	GTCTC	2 cut(s)	298, 372
BsmFI	GGGAC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	70
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	174
BspCNI	CTCAG	1 cut(s)	340
BspLI	GGNNCC	2 cut(s)	72, 202
BspMI	ACCTGC	1 cut(s)	188
BspPI	GGATC	2 cut(s)	65, 78
BsrDI	GCAATG	1 cut(s)	115
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	188, 234
BstDEI	CTNAG	2 cut(s)	243, 327
BstF5I	GGATG	1 cut(s)	36
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	2 cut(s)	298, 372
BstMBI	GATC	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	39
BstV2I	GAAGAC	2 cut(s)	150, 338
BstX2I	RGATCY	1 cut(s)	70
BstXI	CCANNNNNNTGG	2 cut(s)	81, 182
BstYI	RGATCY	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	36
BveI	ACCTGC	1 cut(s)	188
Cac8I	GCNNGC	2 cut(s)	188, 234
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	346
CspAI	ACCGGT	1 cut(s)	164
CviAII	CATG	3 cut(s)	96, 187, 437
CviJI	RGCY	4 cut(s)	174, 236, 256, 402
CviKI_1	RGCY	4 cut(s)	174, 236, 256, 402
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	2 cut(s)	243, 327
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	200
EcoO109I	RGGNCCY	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	54
EcoT22I	ATGCAT	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	2 cut(s)	99, 190
FaiI	YATR	7 cut(s)	88, 97, 116, 180, 188, 407, 438
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	2 cut(s)	95, 186
FauI	CCCGC	1 cut(s)	330
FokI	GGATG	1 cut(s)	23
FspBI	CTAG	3 cut(s)	132, 399, 429
GsaI	CCCAGC	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	2 cut(s)	40, 165
Hin1II	CATG	2 cut(s)	99, 190
HinfI	GANTC	2 cut(s)	155, 334
HpaII	CCGG	2 cut(s)	40, 165
Hpy166II	GTNNAC	2 cut(s)	101, 434
Hpy188I	TCNGA	2 cut(s)	330, 415
Hpy188III	TCNNGA	2 cut(s)	74, 301
Hpy8I	GTNNAC	2 cut(s)	101, 434
HpyCH4IV	ACGT	1 cut(s)	409
HpyCH4V	TGCA	3 cut(s)	36, 90, 190
HpyF3I	CTNAG	2 cut(s)	243, 327
HpySE526I	ACGT	1 cut(s)	409
Hsp92II	CATG	2 cut(s)	99, 190
Kzo9I	GATC	1 cut(s)	70
LpnPI	CCDG	9 cut(s)	52, 53, 87, 89, 178, 183, 217, 270, 286
LweI	GCATC	2 cut(s)	45, 414
MaeI	CTAG	3 cut(s)	132, 399, 429
MaeII	ACGT	1 cut(s)	409
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	4 cut(s)	155, 305, 343, 369
MfeI	CAATTG	1 cut(s)	79
MflI	RGATCY	1 cut(s)	70
MluCI	AATT	4 cut(s)	21, 79, 211, 417
MlyI	GAGTC	2 cut(s)	164, 328
MnlI	CCTC	4 cut(s)	55, 61, 164, 336
Mph1103I	ATGCAT	1 cut(s)	192
MseI	TTAA	4 cut(s)	45, 138, 276, 387
MslI	CAYNNNNRTG	1 cut(s)	180
MspI	CCGG	2 cut(s)	40, 165
MspR9I	CCNGG	1 cut(s)	41
MunI	CAATTG	1 cut(s)	79
Mva1269I	GAATGC	1 cut(s)	190
NciI	CCSGG	1 cut(s)	41
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	2 cut(s)	99, 190
NlaIV	GGNNCC	2 cut(s)	72, 202
NsiI	ATGCAT	1 cut(s)	192
NspI	RCATGY	1 cut(s)	190
PaeI	GCATGC	1 cut(s)	190
PctI	GAATGC	1 cut(s)	190
PinAI	ACCGGT	1 cut(s)	164
PleI	GAGTC	2 cut(s)	163, 328
PpsI	GAGTC	2 cut(s)	163, 328
PpuMI	RGGWCCY	1 cut(s)	200
Psp5II	RGGWCCY	1 cut(s)	200
PspFI	CCCAGC	1 cut(s)	203
PspN4I	GGNNCC	2 cut(s)	72, 202
PspPI	GGNCC	1 cut(s)	200
PspPPI	RGGWCCY	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	4 cut(s)	45, 138, 276, 387
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	1 cut(s)	200
SchI	GAGTC	2 cut(s)	164, 328
ScrFI	CCNGG	1 cut(s)	41
SetI	ASST	6 cut(s)	202, 230, 238, 347, 404, 412
SfaNI	GCATC	2 cut(s)	45, 414
SinI	GGWCC	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	180
SphI	GCATGC	1 cut(s)	190
Sse9I	AATT	4 cut(s)	21, 79, 211, 417
SsiI	CCGC	1 cut(s)	323
SspMI	CTAG	3 cut(s)	132, 399, 429
StyD4I	CCNGG	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	1 cut(s)	412
TasI	AATT	4 cut(s)	21, 79, 211, 417
Tru1I	TTAA	4 cut(s)	45, 138, 276, 387
Tru9I	TTAA	4 cut(s)	45, 138, 276, 387
TspDTI	ATGAA	3 cut(s)	271, 282, 306
VpaK11BI	GGWCC	1 cut(s)	200
XceI	RCATGY	1 cut(s)	190
XspI	CTAG	3 cut(s)	132, 399, 429
Zsp2I	ATGCAT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.