Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001632

Physical Location & Seq

Genomic Coordinates Reverse (-)

36169028 .. 36171599

Gene Structure 2572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG181900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTTGTATTGTGTTCTCCTAATTTTCAGTTATTGCATCCGGGTTAATCCCTCCTTGGTTGAGGACTGGGATCCAGACAATTGGGTATGCAAATCATGTGAACAGGGCAATGGTATGCGTTCTCCAAACTCTAGTATTAAGGAAGACACATTAGAGTCATCAACCGGTAGAGGCCACTATGATGGCATGCATTCAGCAGGTCCCAGCAAAAATTGTAATGGTTCAAGGGGGCAAGCTCACTCTAAGAAACAAAAGCCTGTTGTGAATGAAAAAGTTAAGTTCATTACAAATGAAGAAGTCAGGAGACTATCTTTGGCAGACCCGCCTCAGAAGACTCTTGTCAGGTACAAAACTATTACTCCAAAGTCTCCTATTTCTTCGGGGGTTAAAGCAAATCCTAGCTTTATACGTTCAGAAATTGCGATGCCTAGTGGACATGCCGATGTCTTCATCATTCCTGCAACAGAGCCTGCAACAGAAATTGCGATGCCTCGTGGACATGGTAGGCCCCCCAAGATGCAAAGCATCTCAAAGATTAATCAGCAAGCATGTCAAAATTTAAAACATTCAGAAGATGCTGAAACTTGTAAGAAGAAGGAGACTGCTTCAAAAAAGAAGTCACCCATAGTTACAACATTGAGGAACTTCTCACCTATATCCAGTCCAGGAGGCAACACTTCTGCTGCTGAACATAATCATTCAGATGATAGAGAAAGACACCGCCTGAATAAGTTTCCTAGTGTCCACTCGTATTCTCCTGCTCTACATGCTACTTGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

260

Amino Acids

28.76

Weight (kDa)

9.37

Isoelectric Point (pI)

56.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61090 AT5G61090 AT5G61120 AT5G61120 AT5G61120
fragaria_vesca	FvH4_4g13540 FvH4_4g13550 FvH4_5g13930 FvH4_5g13940 FvH4_5g13940 FvH4_5g13940
malus_domestica	MD06G1202200.v1.1 MD14G1211300.v1.1
prunus_persica	Prupe.5G204200_v2.0.a1 Prupe.5G204200_v2.0.a1 Prupe.5G204400_v2.0.a1
pyrus_communis	pycom06g17820
rosa_chinensis	RchiOBHm_Chr4g0414551 RchiOBHm_Chr4g0414561 RchiOBHm_Chr4g0414571 RchiOBHm_Chr7g0183021
rosa_laevigata	RLG00000005087
rosa_multiflora	Rmu_co8299331.1_g000001 Rmu_sc0000808.1_g000022 Rmu_sc0001063.1_g000013 Rmu_sc0005196.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240320 Rroxscaffold_3G00240450 Rroxscaffold_3G00270840
rosa_rugosa	Rorug06G0451800
rosa_samantha	Rh4AG186600 Rh4AG186700 Rh4BG173800 Rh4BG184200 Rh4CG197200 Rh4CG197500 Rh4DG181800 Rh4DG181900 Rh4DG183300 Rh7AG055300 Rh7AG324400 Rh7BG054700 Rh7BG309400 Rh7CG056000 Rh7CG341300 Rh7DG054800
rosa_wichuraiana	Rw4G015750 Rw7G027480 Rw7G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	188
AciI	CCGC	2 cut(s)	323, 721
AclWI	GGATC	2 cut(s)	65, 78
AcsI	RAATTY	1 cut(s)	556
AfaI	GTAC	1 cut(s)	347
AgeI	ACCGGT	1 cut(s)	164
AgsI	TTSAA	2 cut(s)	225, 609
AjnI	CCWGG	1 cut(s)	664
AluBI	AGCT	2 cut(s)	236, 402
AluI	AGCT	2 cut(s)	236, 402
Alw26I	GTCTC	3 cut(s)	298, 372, 593
AlwI	GGATC	2 cut(s)	65, 78
AlwNI	CAGNNNCTG	1 cut(s)	470
AoxI	GGCC	2 cut(s)	172, 506
ApeKI	GCWGC	1 cut(s)	683
ApoI	RAATTY	1 cut(s)	556
ArsI	GACNNNNNNTTYG	2 cut(s)	602, 634
AseI	ATTAAT	1 cut(s)	537
AsiGI	ACCGGT	1 cut(s)	164
AspS9I	GGNCC	2 cut(s)	200, 507
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	612, 642
AvaII	GGWCC	1 cut(s)	200
BamHI	GGATCC	1 cut(s)	70
BauI	CACGAG	1 cut(s)	492
BbsI	GAAGAC	3 cut(s)	150, 338, 439
BbvI	GCAGC	1 cut(s)	670
BccI	CCATC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	666
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	3 cut(s)	298, 372, 593
BfaI	CTAG	4 cut(s)	132, 399, 429, 738
BfuAI	ACCTGC	1 cut(s)	188
BisI	GCNGC	1 cut(s)	684
BlsI	GCNGC	1 cut(s)	685
Bme1390I	CCNGG	2 cut(s)	41, 666
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	200, 507
BmiI	GGNNCC	3 cut(s)	72, 202, 509
BmrFI	CCNGG	2 cut(s)	41, 666
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	6 cut(s)	45, 414, 477, 507, 534, 565
BmuI	ACTGGG	1 cut(s)	76
BoxI	GACNNNNGTC	1 cut(s)	338
BpiI	GAAGAC	3 cut(s)	150, 338, 439
BpuMI	CCSGG	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	164
BsaXI	ACNNNNNCTCC	2 cut(s)	343, 373
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	2 cut(s)	71, 660
Bse3DI	GCAATG	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	666
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	36
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	2 cut(s)	71, 660
BseXI	GCAGC	1 cut(s)	670
BseYI	CCCAGC	1 cut(s)	203
BshFI	GGCC	2 cut(s)	174, 508
BshTI	ACCGGT	1 cut(s)	164
BsiSI	CCGG	2 cut(s)	40, 165
BslFI	GGGAC	1 cut(s)	186
BsmAI	GTCTC	3 cut(s)	298, 372, 593
BsmFI	GGGAC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	2 cut(s)	174, 508
Bsp143I	GATC	1 cut(s)	70
BspACI	CCGC	2 cut(s)	323, 721
BspANI	GGCC	2 cut(s)	174, 508
BspCNI	CTCAG	1 cut(s)	340
BspLI	GGNNCC	3 cut(s)	72, 202, 509
BspMI	ACCTGC	1 cut(s)	188
BspPI	GGATC	2 cut(s)	65, 78
BsrDI	GCAATG	1 cut(s)	115
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	2 cut(s)	71, 660
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	1 cut(s)	70
BssSI	CACGAG	1 cut(s)	492
BssT1I	CCWWGG	1 cut(s)	54
Bst2BI	CACGAG	1 cut(s)	492
Bst2UI	CCWGG	1 cut(s)	666
BstC8I	GCNNGC	4 cut(s)	188, 234, 471, 546
BstDEI	CTNAG	2 cut(s)	243, 327
BstF5I	GGATG	1 cut(s)	36
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	3 cut(s)	298, 372, 593
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	1 cut(s)	767
BstNI	CCWGG	1 cut(s)	666
BstNSI	RCATGY	4 cut(s)	190, 440, 552, 770
BstPAI	GACNNNNGTC	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	39, 664
BstV1I	GCAGC	1 cut(s)	670
BstV2I	GAAGAC	3 cut(s)	150, 338, 439
BstX2I	RGATCY	1 cut(s)	70
BstXI	CCANNNNNNTGG	2 cut(s)	81, 182
BstYI	RGATCY	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	174, 508
BtgZI	GCGATG	2 cut(s)	437, 500
BtsCI	GGATG	1 cut(s)	36
BveI	ACCTGC	1 cut(s)	188
Cac8I	GCNNGC	4 cut(s)	188, 234, 471, 546
CaiI	CAGNNNCTG	1 cut(s)	470
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	200, 507
Csp6I	GTAC	1 cut(s)	346
CspAI	ACCGGT	1 cut(s)	164
CviAII	CATG	6 cut(s)	96, 187, 437, 500, 549, 767
CviJI	RGCY	6 cut(s)	174, 236, 256, 402, 469, 508
CviKI_1	RGCY	6 cut(s)	174, 236, 256, 402, 469, 508
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	2 cut(s)	243, 327
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
DraI	TTTAAA	1 cut(s)	561
Eco130I	CCWWGG	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	200
EcoO109I	RGGNCCY	2 cut(s)	200, 507
EcoRII	CCWGG	1 cut(s)	664
EcoT14I	CCWWGG	1 cut(s)	54
EcoT22I	ATGCAT	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	6 cut(s)	99, 190, 440, 503, 552, 770
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	6 cut(s)	95, 186, 436, 499, 548, 766
FauI	CCCGC	1 cut(s)	330
Fnu4HI	GCNGC	1 cut(s)	684
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	1 cut(s)	684
FspBI	CTAG	4 cut(s)	132, 399, 429, 738
GluI	GCNGC	1 cut(s)	684
GsaI	CCCAGC	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	174, 508
HapII	CCGG	2 cut(s)	40, 165
Hin1II	CATG	6 cut(s)	99, 190, 440, 503, 552, 770
HinfI	GANTC	2 cut(s)	155, 334
HpaII	CCGG	2 cut(s)	40, 165
HphI	GGTGA	2 cut(s)	612, 642
Hpy166II	GTNNAC	4 cut(s)	101, 434, 497, 745
Hpy188I	TCNGA	4 cut(s)	330, 415, 571, 703
Hpy188III	TCNNGA	2 cut(s)	74, 301
Hpy8I	GTNNAC	4 cut(s)	101, 434, 497, 745
HpyAV	CCTTC	1 cut(s)	589
HpyCH4IV	ACGT	1 cut(s)	409
HpyCH4V	TGCA	6 cut(s)	36, 90, 190, 461, 473, 520
HpyF10VI	GCNNNNNNNGC	1 cut(s)	767
HpyF3I	CTNAG	2 cut(s)	243, 327
HpySE526I	ACGT	1 cut(s)	409
Hsp92II	CATG	6 cut(s)	99, 190, 440, 503, 552, 770
Kzo9I	GATC	1 cut(s)	70
Lsp1109I	GCAGC	1 cut(s)	670
LweI	GCATC	6 cut(s)	45, 414, 477, 507, 534, 565
MaeI	CTAG	4 cut(s)	132, 399, 429, 738
MaeII	ACGT	1 cut(s)	409
MaeIII	GTNAC	2 cut(s)	618, 628
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	7 cut(s)	155, 305, 343, 369, 439, 584, 604
MfeI	CAATTG	1 cut(s)	79
MflI	RGATCY	1 cut(s)	70
MluCI	AATT	6 cut(s)	21, 79, 211, 417, 480, 556
MlyI	GAGTC	2 cut(s)	164, 328
MnlI	CCTC	7 cut(s)	55, 61, 164, 336, 501, 633, 662
Mph1103I	ATGCAT	1 cut(s)	192
MseI	TTAA	6 cut(s)	45, 138, 276, 387, 537, 560
MslI	CAYNNNNRTG	3 cut(s)	180, 441, 702
MspI	CCGG	2 cut(s)	40, 165
MspR9I	CCNGG	2 cut(s)	41, 666
MunI	CAATTG	1 cut(s)	79
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	666
MwoI	GCNNNNNNNGC	1 cut(s)	767
NciI	CCSGG	1 cut(s)	41
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	6 cut(s)	99, 190, 440, 503, 552, 770
NlaIV	GGNNCC	3 cut(s)	72, 202, 509
NmuCI	GTSAC	1 cut(s)	618
NsiI	ATGCAT	1 cut(s)	192
NspI	RCATGY	4 cut(s)	190, 440, 552, 770
PaeI	GCATGC	1 cut(s)	190
PctI	GAATGC	1 cut(s)	190
PfoI	TCCNGGA	1 cut(s)	664
PinAI	ACCGGT	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	685
PleI	GAGTC	2 cut(s)	163, 328
PpsI	GAGTC	2 cut(s)	163, 328
PpuMI	RGGWCCY	1 cut(s)	200
PshAI	GACNNNNGTC	1 cut(s)	338
PshBI	ATTAAT	1 cut(s)	537
Psp5II	RGGWCCY	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	664
PspFI	CCCAGC	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	664
PspN4I	GGNNCC	3 cut(s)	72, 202, 509
PspPI	GGNCC	2 cut(s)	200, 507
PspPPI	RGGWCCY	1 cut(s)	200
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	3 cut(s)	180, 441, 702
SaqAI	TTAA	6 cut(s)	45, 138, 276, 387, 537, 560
SatI	GCNGC	1 cut(s)	684
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	2 cut(s)	200, 507
SchI	GAGTC	2 cut(s)	164, 328
ScrFI	CCNGG	2 cut(s)	41, 666
SetI	ASST	6 cut(s)	202, 238, 347, 404, 412, 655
SfaNI	GCATC	6 cut(s)	45, 414, 477, 507, 534, 565
SinI	GGWCC	1 cut(s)	200
SmiMI	CAYNNNNRTG	3 cut(s)	180, 441, 702
SphI	GCATGC	1 cut(s)	190
Sse9I	AATT	6 cut(s)	21, 79, 211, 417, 480, 556
SsiI	CCGC	2 cut(s)	323, 721
SspMI	CTAG	4 cut(s)	132, 399, 429, 738
StyD4I	CCNGG	2 cut(s)	39, 664
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	1 cut(s)	412
TasI	AATT	6 cut(s)	21, 79, 211, 417, 480, 556
Tru1I	TTAA	6 cut(s)	45, 138, 276, 387, 537, 560
Tru9I	TTAA	6 cut(s)	45, 138, 276, 387, 537, 560
TseFI	GTSAC	1 cut(s)	618
TseI	GCWGC	1 cut(s)	683
Tsp45I	GTSAC	1 cut(s)	618
TspDTI	ATGAA	4 cut(s)	271, 282, 306, 439
VpaK11BI	GGWCC	1 cut(s)	200
VspI	ATTAAT	1 cut(s)	537
XapI	RAATTY	1 cut(s)	556
XceI	RCATGY	4 cut(s)	190, 440, 552, 770
XspI	CTAG	4 cut(s)	132, 399, 429, 738
Zsp2I	ATGCAT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.