Rh7AG055300

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001632
Physical Location & Seq
Forward (+)
3836681 .. 3842701
6021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG055300.1

Sequence Viewer

Length: 1734 bp
ATGCGGGCTAAAATTTCCTATTGTAATTGGGATAAATGGGTTTGCGAATCATGCACTAAGGAAGAAGGGACGCTTTGTTCGAAATCTAGTATTAAGGGAGATCCAGTACCATTGTCAGCTGATATAGCCCACTATGATGGGAGACATTTCGCAAGCCCCAGCAAAAATTCAGGGTGGCAAGCTCACTCTAGCAGGCAAAAGGCTGTCAAGAGTGGAAAAGTAAGGTACATTACACATGAAGAAGTCCAACAGCTAGCTAATACAAAATCAACATCACCCCAAAAGACTTCTATTGTGGTCAAAACTGTTGCATCAAAGCCCTTATCCAGGGTTAACGCACCTCCAGATGTGACGCGGCCTAAACATAGCAGACCCCCTAACAGGCAAAGCATCTCCATTTCAGAAAAGGGCAGCCCCTTCTCCATTTCACAAACCGTGACGCGTCCTAGACGTGGCAGGCCTCCTAAAAAGCAAAACATCTCCATTTCAGAAAAGGGCAGCCCCTTCTCCAGTTCACAAACCGTGATGCGTCCTAGATGTGGCAGGCCCCGCAAGATGCTTAGCATCTCCAAGATTAATCATCAAGCATCTCAAATTATAAAACATTCACAAGAAAATTGGTCTTCTGGAACACAAACAAAAGGGCACGTTATCAAGGAAAAACCAATGGATGGATCAGTACTTTCTCGGGGAGCTGAAACTTCTAGTAGGAAGATAGTGAAGGAACCGAACACACTATCATGCACACCATCACCATCACCATCAAGGCATTCATCACTAAATATGAGTTCAGGTGGTGAGACATCTGCTGCTGAACATAATCATACAGATGGTGAAGAAAGAAACCTCCTCAACATATTCTCTAGTCTCCATTTATATCACGCGTCTCTTCCTGCTCTGCATGCTACTTGGAAGGGAGGCTTCTTCATCTTTGATGCAGACACACCTGCTCAATTCATTGGTGGGTTCCAGGCACAACTTCCCTGTAAGGTTCGTCGTAGAGCCTATGACTTATCACAAAAAATGCCTGCTGTTCTTCGAGCTACTTTGCTTCCTCGATTGCATCTTTGGGATGATCCGTTCCAAAATGAATGTCCTGAACTTAAAGATGTTGCACTGTACTTCTTCCCTGATGATAACATTGCCAGCTCAAGAGAGACTTATGCTTCGCTGTTTGAGGTCATGGATACCAAAAGTTCAGTCTTGAGAATTTACTTTGATGGAGTGGATGCTGCGGAGTTGCTTATATATACATCTAAACAGCTGCGTTTAGACTTGCTGGACACTGTTACATGTCCAAAGACACAAAATTTCTTATGGGGAATCTTTCGTTCTGGAAGTAATTGTCAAGCTGACATAGATGACAGCGCAACTACTGCAGATATGGAAGTTGACATGGTTGGTGGAAAGATGGTGGGAAGTGTTGATGTAGTTGTTTCGAAAGATTCATCCACCCCTTGCAGAATGTCTGAGCAGCCTAGAATGACTGCTGTGCAACAACTTTTGTGTATTACAAAGCAGGAGCATTCTTCTTACCAAAACAGAATGAGGCTTCTAGATACTGCTATTAAACAATTGTTGGGAGTTAAATCAGAAGAGCCGAAGGACTCTGATACTTCTGCATCATCAGCAATGGAGACCACAATTGCATTGCAGCAAGCGATGTTGGAGAAAGACAATGACGAAATGGTAGGGACTTCTTCAACTACCGATCATGCAGATAATCAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

577

Amino Acids

63.84

Weight (kDa)

8.97

Isoelectric Point (pI)

52.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 304 - 443 1.3e-34 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 599
AarI CACCTGC 1 cut(s) 955
Acc36I ACCTGC 1 cut(s) 955
AccB7I CCANNNNNTGG 1 cut(s) 671
AccII CGCG 3 cut(s) 355, 442, 884
AciI CCGC 4 cut(s) 4, 355, 550, 1235
AclWI GGATC 3 cut(s) 95, 682, 1070
AcsI RAATTY 4 cut(s) 12, 166, 1209, 1309
AfaI GTAC 4 cut(s) 108, 227, 681, 1121
AfiI CCNNNNNNNGG 5 cut(s) 327, 381, 452, 539, 671
AflIII ACRYGT 3 cut(s) 440, 882, 1292
AgsI TTSAA 1 cut(s) 1704
AjiI CACGTC 1 cut(s) 452
AjnI CCWGG 2 cut(s) 326, 969
AloI GAACNNNNNNTCC 4 cut(s) 61, 93, 1064, 1096
AluBI AGCT 9 cut(s) 119, 182, 253, 257, 695, 1043, 1149, 1264, 1352
AluI AGCT 9 cut(s) 119, 182, 253, 257, 695, 1043, 1149, 1264, 1352
Alw26I GTCTC 6 cut(s) 136, 794, 872, 891, 1151, 1631
AlwI GGATC 3 cut(s) 95, 682, 1070
Ama87I CYCGRG 1 cut(s) 687
AoxI GGCC 3 cut(s) 356, 458, 545
ApeKI GCWGC 7 cut(s) 411, 498, 809, 1232, 1264, 1474, 1654
ApoI RAATTY 4 cut(s) 12, 166, 1209, 1309
ArsI GACNNNNNNTTYG 8 cut(s) 61, 93, 1078, 1110, 1150, 1182, 1185, 1217
AseI ATTAAT 1 cut(s) 576
AspLEI GCGC 1 cut(s) 1370
AspS9I GGNCC 1 cut(s) 546
AsuHPI GGTGA 5 cut(s) 267, 744, 750, 809, 845
AsuII TTCGAA 2 cut(s) 80, 1439
AsuNHI GCTAGC 1 cut(s) 253
AvaI CYCGRG 1 cut(s) 687
BaeGI GKGCMC 1 cut(s) 648
BbsI GAAGAC 1 cut(s) 615
BbvI GCAGC 7 cut(s) 423, 510, 796, 1219, 1251, 1486, 1666
BccI CCATC 8 cut(s) 131, 665, 757, 763, 769, 824, 1214, 1405
BciT130I CCWGG 2 cut(s) 328, 971
BciVI GTATCC 1 cut(s) 1180
BcoDI GTCTC 6 cut(s) 136, 794, 872, 891, 1151, 1631
BfaI CTAG 9 cut(s) 87, 189, 254, 447, 534, 705, 864, 1479, 1556
BfmI CTRYAG 1 cut(s) 1377
BfuAI ACCTGC 1 cut(s) 955
BfuI GTATCC 1 cut(s) 1180
BisI GCNGC 8 cut(s) 356, 412, 499, 810, 1233, 1265, 1475, 1655
BlpI GCTNAGC 1 cut(s) 560
BlsI GCNGC 8 cut(s) 357, 413, 500, 811, 1234, 1266, 1476, 1656
BmcAI AGTACT 1 cut(s) 681
Bme1390I CCNGG 2 cut(s) 328, 971
BmeT110I CYCGRG 1 cut(s) 687
BmgBI CACGTC 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 546
BmiI GGNNCC 3 cut(s) 548, 726, 968
BmrFI CCNGG 2 cut(s) 328, 971
BmtI GCTAGC 1 cut(s) 257
BpiI GAAGAC 1 cut(s) 615
BpmI CTGGAG 2 cut(s) 327, 493
Bpu1102I GCTNAGC 1 cut(s) 560
Bpu14I TTCGAA 2 cut(s) 80, 1439
BpuEI CTTGAG 2 cut(s) 1135, 1225
BsaI GGTCTC 1 cut(s) 1631
BsaJI CCNNGG 1 cut(s) 327
BsaXI ACNNNNNCTCC 2 cut(s) 90, 120
Bsc4I CCNNNNNNNGG 5 cut(s) 327, 381, 452, 539, 671
Bse1I ACTGG 2 cut(s) 104, 510
Bse3DI GCAATG 3 cut(s) 1140, 1638, 1649
BseBI CCWGG 2 cut(s) 328, 971
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 4 cut(s) 676, 1078, 1234, 1448
BseLI CCNNNNNNNGG 5 cut(s) 327, 381, 452, 539, 671
BseMI GCAATG 3 cut(s) 1140, 1638, 1649
BseMII CTCAG 1 cut(s) 1461
BseNI ACTGG 2 cut(s) 104, 510
BseRI GAGGAG 1 cut(s) 839
BseSI GKGCMC 1 cut(s) 648
BseXI GCAGC 7 cut(s) 423, 510, 796, 1219, 1251, 1486, 1666
BseYI CCCAGC 1 cut(s) 158
Bsh1236I CGCG 3 cut(s) 355, 442, 884
BshFI GGCC 3 cut(s) 358, 460, 547
BsiHKCI CYCGRG 1 cut(s) 687
BslFI GGGAC 2 cut(s) 82, 1708
BslI CCNNNNNNNGG 5 cut(s) 327, 381, 452, 539, 671
BsmAI GTCTC 6 cut(s) 136, 794, 872, 891, 1151, 1631
BsmBI CGTCTC 1 cut(s) 891
BsmFI GGGAC 2 cut(s) 82, 1708
BsmI GAATGC 2 cut(s) 769, 1525
BsnI GGCC 3 cut(s) 358, 460, 547
Bso31I GGTCTC 1 cut(s) 1631
BsoBI CYCGRG 1 cut(s) 687
Bsp119I TTCGAA 2 cut(s) 80, 1439
Bsp1286I GDGCHC 1 cut(s) 648
Bsp143I GATC 4 cut(s) 100, 674, 1075, 1711
Bsp1720I GCTNAGC 1 cut(s) 560
BspACI CCGC 4 cut(s) 4, 355, 550, 1235
BspANI GGCC 3 cut(s) 358, 460, 547
BspCNI CTCAG 1 cut(s) 1462
BspFNI CGCG 3 cut(s) 355, 442, 884
BspLI GGNNCC 3 cut(s) 548, 726, 968
BspMAI CTGCAG 1 cut(s) 1381
BspMI ACCTGC 1 cut(s) 955
BspOI GCTAGC 1 cut(s) 257
BspPI GGATC 3 cut(s) 95, 682, 1070
BspQI GCTCTTC 1 cut(s) 1590
BspT104I TTCGAA 2 cut(s) 80, 1439
BspTNI GGTCTC 1 cut(s) 1631
BsrDI GCAATG 3 cut(s) 1140, 1638, 1649
BsrI ACTGG 2 cut(s) 104, 510
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 4 cut(s) 100, 674, 1075, 1711
Bst2UI CCWGG 2 cut(s) 328, 971
Bst4CI ACNGT 5 cut(s) 307, 436, 523, 1119, 1288
Bst6I CTCTTC 2 cut(s) 894, 1590
BstAPI GCANNNNNTGC 1 cut(s) 1376
BstBI TTCGAA 2 cut(s) 80, 1439
BstDEI CTNAG 3 cut(s) 57, 560, 1470
BstENI CCTNNNNNAGG 1 cut(s) 325
BstF5I GGATG 4 cut(s) 676, 1078, 1234, 1448
BstFNI CGCG 3 cut(s) 355, 442, 884
BstHHI GCGC 1 cut(s) 1370
BstKTI GATC 4 cut(s) 103, 677, 1078, 1714
BstMAI GTCTC 6 cut(s) 136, 794, 872, 891, 1151, 1631
BstMBI GATC 4 cut(s) 100, 674, 1075, 1711
BstMWI GCNNNNNNNGC 6 cut(s) 51, 125, 549, 902, 1376, 1628
BstNI CCWGG 2 cut(s) 328, 971
BstNSI RCATGY 2 cut(s) 905, 1296
BstSCI CCNGG 2 cut(s) 326, 969
BstSFI CTRYAG 1 cut(s) 1377
BstSLI GKGCMC 1 cut(s) 648
BstUI CGCG 3 cut(s) 355, 442, 884
BstV1I GCAGC 7 cut(s) 423, 510, 796, 1219, 1251, 1486, 1666
BstV2I GAAGAC 1 cut(s) 615
BstX2I RGATCY 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 137
BstYI RGATCY 1 cut(s) 100
BsuI GTATCC 1 cut(s) 1180
BsuRI GGCC 3 cut(s) 358, 460, 547
BtgZI GCGATG 1 cut(s) 1676
BtrI CACGTC 1 cut(s) 452
BtsCI GGATG 4 cut(s) 676, 1078, 1234, 1448
BtsIMutI CAGTG 2 cut(s) 1115, 1284
BveI ACCTGC 1 cut(s) 955
CfoI GCGC 1 cut(s) 1370
Cfr13I GGNCC 1 cut(s) 546
CseI GACGC 6 cut(s) 79, 361, 431, 448, 518, 873
Csp6I GTAC 4 cut(s) 107, 226, 680, 1120
CviAII CATG 8 cut(s) 51, 236, 741, 902, 1183, 1293, 1396, 1715
CviQI GTAC 4 cut(s) 107, 226, 680, 1120
DdeI CTNAG 3 cut(s) 57, 560, 1470
DpnI GATC 4 cut(s) 102, 676, 1077, 1713
DpnII GATC 4 cut(s) 100, 674, 1075, 1711
Eam1104I CTCTTC 2 cut(s) 894, 1590
EarI CTCTTC 2 cut(s) 894, 1590
Eco147I AGGCCT 1 cut(s) 460
Eco31I GGTCTC 1 cut(s) 1631
Eco88I CYCGRG 1 cut(s) 687
EcoNI CCTNNNNNAGG 1 cut(s) 325
EcoO109I RGGNCCY 1 cut(s) 546
EcoRII CCWGG 2 cut(s) 326, 969
Esp3I CGTCTC 1 cut(s) 891
FaeI CATG 8 cut(s) 54, 239, 744, 905, 1186, 1296, 1399, 1718
FalI AAGNNNNNCTT 6 cut(s) 57, 89, 905, 937, 1144, 1176
FaqI GGGAC 2 cut(s) 82, 1708
FatI CATG 8 cut(s) 50, 235, 740, 901, 1182, 1292, 1395, 1714
FauI CCCGC 1 cut(s) 557
Fnu4HI GCNGC 8 cut(s) 356, 412, 499, 810, 1233, 1265, 1475, 1655
FokI GGATG 4 cut(s) 683, 1085, 1241, 1435
Fsp4HI GCNGC 8 cut(s) 356, 412, 499, 810, 1233, 1265, 1475, 1655
FspBI CTAG 9 cut(s) 87, 189, 254, 447, 534, 705, 864, 1479, 1556
GlaI GCGC 1 cut(s) 1369
GluI GCNGC 8 cut(s) 356, 412, 499, 810, 1233, 1265, 1475, 1655
GsaI CCCAGC 1 cut(s) 162
GsuI CTGGAG 2 cut(s) 327, 493
HaeIII GGCC 3 cut(s) 358, 460, 547
HgaI GACGC 6 cut(s) 79, 361, 431, 448, 518, 873
HhaI GCGC 1 cut(s) 1370
Hin1II CATG 8 cut(s) 54, 239, 744, 905, 1186, 1296, 1399, 1718
Hin6I GCGC 1 cut(s) 1368
HinP1I GCGC 1 cut(s) 1368
HincII GTYRAC 2 cut(s) 334, 1393
HindII GTYRAC 2 cut(s) 334, 1393
HinfI GANTC 4 cut(s) 47, 1323, 1445, 1607
HpaI GTTAAC 1 cut(s) 334
HphI GGTGA 5 cut(s) 267, 744, 750, 809, 845
Hpy166II GTNNAC 3 cut(s) 334, 515, 1393
Hpy188I TCNGA 6 cut(s) 403, 490, 1471, 1594, 1612, 1728
Hpy188III TCNNGA 8 cut(s) 208, 344, 627, 1097, 1152, 1204, 1335, 1556
Hpy8I GTNNAC 3 cut(s) 334, 515, 1393
Hpy99I CGWCG 1 cut(s) 999
HpyAV CCTTC 6 cut(s) 59, 427, 514, 715, 907, 1597
HpyCH4III ACNGT 5 cut(s) 307, 436, 523, 1119, 1288
HpyCH4IV ACGT 2 cut(s) 451, 648
HpyF10VI GCNNNNNNNGC 6 cut(s) 51, 125, 549, 902, 1376, 1628
HpyF3I CTNAG 3 cut(s) 57, 560, 1470
HpySE526I ACGT 2 cut(s) 451, 648
Hsp92II CATG 8 cut(s) 54, 239, 744, 905, 1186, 1296, 1399, 1718
HspAI GCGC 1 cut(s) 1368
KspAI GTTAAC 1 cut(s) 334
Kzo9I GATC 4 cut(s) 100, 674, 1075, 1711
LguI GCTCTTC 1 cut(s) 1590
LmnI GCTCC 2 cut(s) 692, 1522
Lsp1109I GCAGC 7 cut(s) 423, 510, 796, 1219, 1251, 1486, 1666
MaeI CTAG 9 cut(s) 87, 189, 254, 447, 534, 705, 864, 1479, 1556
MaeII ACGT 2 cut(s) 451, 648
MaeIII GTNAC 3 cut(s) 349, 436, 1288
MalI GATC 4 cut(s) 102, 676, 1077, 1713
MboI GATC 4 cut(s) 100, 674, 1075, 1711
MfeI CAATTG 2 cut(s) 1574, 1644
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 648
MluI ACGCGT 2 cut(s) 440, 882
MlyI GAGTC 1 cut(s) 1601
MmeI TCCRAC 2 cut(s) 271, 1647
MnlI CCTC 8 cut(s) 351, 471, 857, 860, 911, 1065, 1171, 1542
MseI TTAA 7 cut(s) 93, 333, 576, 1104, 1569, 1587, 1732
MslI CAYNNNNRTG 3 cut(s) 135, 739, 828
MspA1I CMGCKG 2 cut(s) 119, 1264
MspR9I CCNGG 2 cut(s) 328, 971
MunI CAATTG 2 cut(s) 1574, 1644
Mva1269I GAATGC 2 cut(s) 769, 1525
MvaI CCWGG 2 cut(s) 328, 971
MvnI CGCG 3 cut(s) 355, 442, 884
MwoI GCNNNNNNNGC 6 cut(s) 51, 125, 549, 902, 1376, 1628
NdeII GATC 4 cut(s) 100, 674, 1075, 1711
NheI GCTAGC 1 cut(s) 253
NlaIII CATG 8 cut(s) 54, 239, 744, 905, 1186, 1296, 1399, 1718
NlaIV GGNNCC 3 cut(s) 548, 726, 968
NmuCI GTSAC 2 cut(s) 349, 436
NspI RCATGY 2 cut(s) 905, 1296
NspV TTCGAA 2 cut(s) 80, 1439
PaeI GCATGC 1 cut(s) 905
PaqCI CACCTGC 1 cut(s) 955
PceI AGGCCT 1 cut(s) 460
PciI ACATGT 1 cut(s) 1292
PciSI GCTCTTC 1 cut(s) 1590
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PctI GAATGC 2 cut(s) 769, 1525
PfeI GAWTC 3 cut(s) 47, 1323, 1445
PflMI CCANNNNNTGG 1 cut(s) 671
PkrI GCNGC 8 cut(s) 357, 413, 500, 811, 1234, 1266, 1476, 1656
PleI GAGTC 1 cut(s) 1601
PpsI GAGTC 1 cut(s) 1601
PscI ACATGT 1 cut(s) 1292
PshBI ATTAAT 1 cut(s) 576
PsiI TTATAA 1 cut(s) 599
Psp6I CCWGG 2 cut(s) 326, 969
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 2 cut(s) 326, 969
PspN4I GGNNCC 3 cut(s) 548, 726, 968
PspPI GGNCC 1 cut(s) 546
PstI CTGCAG 1 cut(s) 1381
PsuI RGATCY 1 cut(s) 100
PvuII CAGCTG 2 cut(s) 119, 1264
RsaI GTAC 4 cut(s) 108, 227, 681, 1121
RsaNI GTAC 4 cut(s) 107, 226, 680, 1120
RseI CAYNNNNRTG 3 cut(s) 135, 739, 828
SapI GCTCTTC 1 cut(s) 1590
SaqAI TTAA 7 cut(s) 93, 333, 576, 1104, 1569, 1587, 1732
SatI GCNGC 8 cut(s) 356, 412, 499, 810, 1233, 1265, 1475, 1655
Sau3AI GATC 4 cut(s) 100, 674, 1075, 1711
Sau96I GGNCC 1 cut(s) 546
ScaI AGTACT 1 cut(s) 681
SchI GAGTC 1 cut(s) 1601
ScrFI CCNGG 2 cut(s) 328, 971
SduI GDGCHC 1 cut(s) 648
SfcI CTRYAG 1 cut(s) 1377
SfuI TTCGAA 2 cut(s) 80, 1439
SmiMI CAYNNNNRTG 3 cut(s) 135, 739, 828
SmlI CTYRAG 2 cut(s) 1150, 1204
SmoI CTYRAG 2 cut(s) 1150, 1204
SphI GCATGC 1 cut(s) 905
SseBI AGGCCT 1 cut(s) 460
SsiI CCGC 4 cut(s) 4, 355, 550, 1235
SspMI CTAG 9 cut(s) 87, 189, 254, 447, 534, 705, 864, 1479, 1556
StuI AGGCCT 1 cut(s) 460
StyD4I CCNGG 2 cut(s) 326, 969
TaaI ACNGT 5 cut(s) 307, 436, 523, 1119, 1288
TaiI ACGT 2 cut(s) 454, 651
TaqI TCGA 4 cut(s) 80, 1039, 1057, 1439
TatI WGTACW 2 cut(s) 679, 1119
TauI GCSGC 1 cut(s) 358
TfiI GAWTC 3 cut(s) 47, 1323, 1445
Tru1I TTAA 7 cut(s) 93, 333, 576, 1104, 1569, 1587, 1732
Tru9I TTAA 7 cut(s) 93, 333, 576, 1104, 1569, 1587, 1732
TscAI CASTG 2 cut(s) 1122, 1291
TseFI GTSAC 2 cut(s) 349, 436
TseI GCWGC 7 cut(s) 411, 498, 809, 1232, 1264, 1474, 1654
Tsp45I GTSAC 2 cut(s) 349, 436
TspDTI ATGAA 6 cut(s) 252, 762, 916, 946, 1104, 1437
TspGWI ACGGA 1 cut(s) 1068
TspRI CASTG 2 cut(s) 1122, 1291
Van91I CCANNNNNTGG 1 cut(s) 671
VspI ATTAAT 1 cut(s) 576
XagI CCTNNNNNAGG 1 cut(s) 325
XapI RAATTY 4 cut(s) 12, 166, 1209, 1309
XbaI TCTAGA 1 cut(s) 1555
XceI RCATGY 2 cut(s) 905, 1296
XspI CTAG 9 cut(s) 87, 189, 254, 447, 534, 705, 864, 1479, 1556
ZrmI AGTACT 1 cut(s) 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.