Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001632

Physical Location & Seq

Genomic Coordinates Reverse (-)

46502090 .. 46504105

Gene Structure 2016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG186600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGCTACTTGGAAGGGAGGCTTCATCATTCTTGATTCAGAAACACCTGCTCAATTCATTGATGGATTCCAAGCACAACCTCCCTGTACTGTACATCAATAAGCCTATGAGTTTTCATGAAATTTGCCTCCTGTCTTCCGGGCCGCTTTGCTTCCTAGATTGCTTCTTTGGGCTGATCCCTTCTGAGAGGAATGTCCTGATCTTCAAGATGTTGGACTTTACTTTTTCCCTGATGATAACATTGCCAGATCAAGAGAGACCTATCATGGATACCCAGAATTCAGTGATGAGGATTTACTTTGATGGAGTGGATGCTGTGGATTTGTTGATATTTACATCTAAACAGCTGCATTTAGATTCGCTGAATACCGTGACAAGTCCAAGTACAGAAAACTTCTTATGGGGAATTTTTCGTGACAAGAATCATTGTCGAGCTGACATGTATGACAATGGAACTACTGTTGATATGGAAGTTGACATGGCTGGTGGAAAGATGGTTGGAACCGTTGATGTGGTTGTTCTGAAAGATTCATCCACCCGTTGTAGGAGGCCTGACCCTATCATGAAAGCAGTGCAGCAACTTTTGACTATTAAGAAGGAGGAGCATTCTTCATACCTGACCAGATTGAGGGTTCTAGATTGTACTATTAAACAATTGTTGGCATTTAACTCAGAGGAGCCTTTCATGAAGGATGAGCATTCTGCATCATCGGAAATGAAGATGGCGTGTAGCATGCAAGTGAAGTTGGAGAAAGATGAGGATGAAACCTGCCTTAAAACGGACAAGAAAACACTCCCATGTTTGCCATGCTTTCCTGAGCCTAGCCCTCAAAGTGTTGCTGGCCCAACTGATAAAATGGTAGGGACAACTTCAACTGTAGATGAGATTACCATACCCAGGATGCTTTGCAGCAAAGATAACCACACCACAATGAAAGAAAATACAGACACCGTTCGACCCCATCACTTCCAAAGGTATACAAAGTTTCCGCGCAGAGTTTTGTACACAAGAAACAGAGTTATGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

342

Amino Acids

39.1

Weight (kDa)

6.37

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61090 AT5G61090 AT5G61120 AT5G61120 AT5G61120
fragaria_vesca	FvH4_4g13540 FvH4_4g13550 FvH4_5g13930 FvH4_5g13940 FvH4_5g13940 FvH4_5g13940
malus_domestica	MD06G1202200.v1.1 MD14G1211300.v1.1
prunus_persica	Prupe.5G204200_v2.0.a1 Prupe.5G204200_v2.0.a1 Prupe.5G204400_v2.0.a1
pyrus_communis	pycom06g17820
rosa_chinensis	RchiOBHm_Chr4g0414551 RchiOBHm_Chr4g0414561 RchiOBHm_Chr4g0414571 RchiOBHm_Chr7g0183021
rosa_laevigata	RLG00000005087
rosa_multiflora	Rmu_co8299331.1_g000001 Rmu_sc0000808.1_g000022 Rmu_sc0001063.1_g000013 Rmu_sc0005196.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240320 Rroxscaffold_3G00240450 Rroxscaffold_3G00270840
rosa_rugosa	Rorug06G0451800
rosa_samantha	Rh4AG186600 Rh4AG186700 Rh4BG173800 Rh4BG184200 Rh4CG197200 Rh4CG197500 Rh4DG181800 Rh4DG181900 Rh4DG183300 Rh7AG055300 Rh7AG324400 Rh7BG054700 Rh7BG309400 Rh7CG056000 Rh7CG341300 Rh7DG054800
rosa_wichuraiana	Rw4G015750 Rw7G027480 Rw7G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	54
Acc36I	ACCTGC	2 cut(s)	54, 776
AccI	GTMKAC	1 cut(s)	977
AccII	CGCG	1 cut(s)	991
AciI	CCGC	2 cut(s)	143, 989
AclWI	GGATC	1 cut(s)	169
AcsI	RAATTY	3 cut(s)	120, 277, 405
AfaI	GTAC	5 cut(s)	87, 92, 385, 643, 1004
AfiI	CCNNNNNNNGG	4 cut(s)	543, 627, 778, 897
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	2 cut(s)	205, 873
AjnI	CCWGG	1 cut(s)	896
AluBI	AGCT	2 cut(s)	346, 434
AluI	AGCT	2 cut(s)	346, 434
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	1 cut(s)	169
AoxI	GGCC	3 cut(s)	140, 548, 841
ApeKI	GCWGC	3 cut(s)	346, 574, 909
ApoI	RAATTY	3 cut(s)	120, 277, 405
AspLEI	GCGC	1 cut(s)	993
AspS9I	GGNCC	2 cut(s)	140, 842
AsuC2I	CCSGG	1 cut(s)	139
BbsI	GAAGAC	1 cut(s)	126
BbvI	GCAGC	3 cut(s)	333, 586, 921
BccI	CCATC	5 cut(s)	55, 296, 487, 715, 969
BciT130I	CCWGG	1 cut(s)	898
BciVI	GTATCC	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	3 cut(s)	155, 635, 822
BfmI	CTRYAG	1 cut(s)	876
BfuAI	ACCTGC	2 cut(s)	54, 776
BfuI	GTATCC	1 cut(s)	262
BisI	GCNGC	4 cut(s)	143, 347, 575, 910
BlsI	GCNGC	4 cut(s)	144, 348, 576, 911
Bme1390I	CCNGG	2 cut(s)	139, 898
BmgT120I	GGNCC	2 cut(s)	140, 842
BmiI	GGNNCC	2 cut(s)	502, 678
BmrFI	CCNGG	2 cut(s)	139, 898
BmsI	GCATC	3 cut(s)	301, 713, 891
BpiI	GAAGAC	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	816
BpuMI	CCSGG	1 cut(s)	139
BsaI	GGTCTC	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	896
Bsc4I	CCNNNNNNNGG	4 cut(s)	543, 627, 778, 897
Bse3DI	GCAATG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	898
BseDI	CCNNGG	1 cut(s)	896
BseGI	GGATG	5 cut(s)	316, 530, 697, 766, 906
BseLI	CCNNNNNNNGG	4 cut(s)	543, 627, 778, 897
BseMI	GCAATG	1 cut(s)	239
BseMII	CTCAG	3 cut(s)	174, 684, 807
BseRI	GAGGAG	2 cut(s)	614, 689
BseXI	GCAGC	3 cut(s)	333, 586, 921
BsgI	GTGCAG	1 cut(s)	593
Bsh1236I	CGCG	1 cut(s)	991
BshFI	GGCC	3 cut(s)	142, 550, 843
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	877
BslI	CCNNNNNNNGG	4 cut(s)	543, 627, 778, 897
BsmAI	GTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	877
BsmI	GAATGC	2 cut(s)	604, 697
BsnI	GGCC	3 cut(s)	142, 550, 843
Bso31I	GGTCTC	1 cut(s)	250
Bsp1407I	TGTACA	2 cut(s)	90, 1002
Bsp143I	GATC	3 cut(s)	174, 198, 247
BspACI	CCGC	2 cut(s)	143, 989
BspANI	GGCC	3 cut(s)	142, 550, 843
BspCNI	CTCAG	3 cut(s)	175, 683, 808
BspFNI	CGCG	1 cut(s)	991
BspHI	TCATGA	3 cut(s)	115, 561, 684
BspLI	GGNNCC	2 cut(s)	502, 678
BspMI	ACCTGC	2 cut(s)	54, 776
BspPI	GGATC	1 cut(s)	169
BspTNI	GGTCTC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	239
BsrGI	TGTACA	2 cut(s)	90, 1002
BssECI	CCNNGG	1 cut(s)	896
BssMI	GATC	3 cut(s)	174, 198, 247
BssNAI	GTATAC	1 cut(s)	978
Bst1107I	GTATAC	1 cut(s)	978
Bst2UI	CCWGG	1 cut(s)	898
Bst4CI	ACNGT	6 cut(s)	90, 370, 460, 505, 877, 952
BstAUI	TGTACA	2 cut(s)	90, 1002
BstC8I	GCNNGC	2 cut(s)	734, 841
BstDEI	CTNAG	3 cut(s)	183, 670, 816
BstF5I	GGATG	5 cut(s)	316, 530, 697, 766, 906
BstFNI	CGCG	1 cut(s)	991
BstHHI	GCGC	1 cut(s)	993
BstKTI	GATC	3 cut(s)	177, 201, 250
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	3 cut(s)	174, 198, 247
BstNI	CCWGG	1 cut(s)	898
BstNSI	RCATGY	2 cut(s)	442, 736
BstSCI	CCNGG	2 cut(s)	137, 896
BstSFI	CTRYAG	1 cut(s)	876
BstUI	CGCG	1 cut(s)	991
BstV1I	GCAGC	3 cut(s)	333, 586, 921
BstV2I	GAAGAC	1 cut(s)	126
BstZ17I	GTATAC	1 cut(s)	978
BsuI	GTATCC	1 cut(s)	262
BsuRI	GGCC	3 cut(s)	142, 550, 843
BtsCI	GGATG	5 cut(s)	316, 530, 697, 766, 906
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	2 cut(s)	288, 576
BveI	ACCTGC	2 cut(s)	54, 776
Cac8I	GCNNGC	2 cut(s)	734, 841
CciI	TCATGA	3 cut(s)	115, 561, 684
CfoI	GCGC	1 cut(s)	993
Cfr13I	GGNCC	2 cut(s)	140, 842
Csp6I	GTAC	5 cut(s)	86, 91, 384, 642, 1003
CviAII	CATG	9 cut(s)	116, 265, 439, 478, 562, 685, 733, 798, 807
CviQI	GTAC	5 cut(s)	86, 91, 384, 642, 1003
DdeI	CTNAG	3 cut(s)	183, 670, 816
DpnI	GATC	3 cut(s)	176, 200, 249
DpnII	GATC	3 cut(s)	174, 198, 247
Eco147I	AGGCCT	1 cut(s)	550
Eco31I	GGTCTC	1 cut(s)	250
EcoRI	GAATTC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	896
FaeI	CATG	9 cut(s)	119, 268, 442, 481, 565, 688, 736, 801, 810
FalI	AAGNNNNNCTT	1 cut(s)	36
FaqI	GGGAC	1 cut(s)	877
FatI	CATG	9 cut(s)	115, 264, 438, 477, 561, 684, 732, 797, 806
FblI	GTMKAC	1 cut(s)	977
Fnu4HI	GCNGC	4 cut(s)	143, 347, 575, 910
FokI	GGATG	5 cut(s)	323, 517, 704, 773, 913
Fsp4HI	GCNGC	4 cut(s)	143, 347, 575, 910
FspBI	CTAG	3 cut(s)	155, 635, 822
GlaI	GCGC	1 cut(s)	992
GluI	GCNGC	4 cut(s)	143, 347, 575, 910
HaeIII	GGCC	3 cut(s)	142, 550, 843
HapII	CCGG	1 cut(s)	138
HhaI	GCGC	1 cut(s)	993
Hin1II	CATG	9 cut(s)	119, 268, 442, 481, 565, 688, 736, 801, 810
Hin6I	GCGC	1 cut(s)	991
HinP1I	GCGC	1 cut(s)	991
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	5 cut(s)	34, 65, 356, 421, 527
HpaII	CCGG	1 cut(s)	138
Hpy166II	GTNNAC	3 cut(s)	475, 978, 1005
Hpy188I	TCNGA	5 cut(s)	39, 184, 522, 673, 712
Hpy8I	GTNNAC	3 cut(s)	475, 978, 1005
HpyAV	CCTTC	4 cut(s)	6, 189, 589, 682
HpyCH4III	ACNGT	6 cut(s)	90, 370, 460, 505, 877, 952
HpyCH4V	TGCA	5 cut(s)	349, 574, 704, 736, 909
HpyF3I	CTNAG	3 cut(s)	183, 670, 816
Hsp92II	CATG	9 cut(s)	119, 268, 442, 481, 565, 688, 736, 801, 810
HspAI	GCGC	1 cut(s)	991
Kzo9I	GATC	3 cut(s)	174, 198, 247
LmnI	GCTCC	2 cut(s)	601, 676
Lsp1109I	GCAGC	3 cut(s)	333, 586, 921
LweI	GCATC	3 cut(s)	301, 713, 891
MaeI	CTAG	3 cut(s)	155, 635, 822
MaeIII	GTNAC	2 cut(s)	370, 413
MalI	GATC	3 cut(s)	176, 200, 249
MboI	GATC	3 cut(s)	174, 198, 247
MboII	GAAGA	4 cut(s)	126, 193, 600, 730
MfeI	CAATTG	1 cut(s)	653
MluCI	AATT	5 cut(s)	52, 120, 277, 405, 653
MmeI	TCCRAC	3 cut(s)	192, 478, 726
MseI	TTAA	4 cut(s)	591, 648, 666, 774
MslI	CAYNNNNRTG	3 cut(s)	737, 796, 929
MspA1I	CMGCKG	1 cut(s)	346
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	2 cut(s)	139, 898
MunI	CAATTG	1 cut(s)	653
Mva1269I	GAATGC	2 cut(s)	604, 697
MvaI	CCWGG	1 cut(s)	898
MvnI	CGCG	1 cut(s)	991
NciI	CCSGG	1 cut(s)	139
NdeII	GATC	3 cut(s)	174, 198, 247
NlaIII	CATG	9 cut(s)	119, 268, 442, 481, 565, 688, 736, 801, 810
NlaIV	GGNNCC	2 cut(s)	502, 678
NmuCI	GTSAC	2 cut(s)	370, 413
NspI	RCATGY	2 cut(s)	442, 736
PaeI	GCATGC	1 cut(s)	736
PagI	TCATGA	3 cut(s)	115, 561, 684
PaqCI	CACCTGC	1 cut(s)	54
PceI	AGGCCT	1 cut(s)	550
PciI	ACATGT	1 cut(s)	438
PctI	GAATGC	2 cut(s)	604, 697
PfeI	GAWTC	5 cut(s)	34, 65, 356, 421, 527
PkrI	GCNGC	4 cut(s)	144, 348, 576, 911
PscI	ACATGT	1 cut(s)	438
Psp6I	CCWGG	1 cut(s)	896
PspGI	CCWGG	1 cut(s)	896
PspN4I	GGNNCC	2 cut(s)	502, 678
PspPI	GGNCC	2 cut(s)	140, 842
PvuII	CAGCTG	1 cut(s)	346
RsaI	GTAC	5 cut(s)	87, 92, 385, 643, 1004
RsaNI	GTAC	5 cut(s)	86, 91, 384, 642, 1003
RseI	CAYNNNNRTG	3 cut(s)	737, 796, 929
SaqAI	TTAA	4 cut(s)	591, 648, 666, 774
SatI	GCNGC	4 cut(s)	143, 347, 575, 910
Sau3AI	GATC	3 cut(s)	174, 198, 247
Sau96I	GGNCC	2 cut(s)	140, 842
ScrFI	CCNGG	2 cut(s)	139, 898
SetI	ASST	8 cut(s)	48, 81, 262, 348, 436, 618, 770, 977
SfaNI	GCATC	3 cut(s)	301, 713, 891
SfcI	CTRYAG	1 cut(s)	876
SmiMI	CAYNNNNRTG	3 cut(s)	737, 796, 929
SphI	GCATGC	1 cut(s)	736
Sse9I	AATT	5 cut(s)	52, 120, 277, 405, 653
SseBI	AGGCCT	1 cut(s)	550
SsiI	CCGC	2 cut(s)	143, 989
SspMI	CTAG	3 cut(s)	155, 635, 822
StuI	AGGCCT	1 cut(s)	550
StyD4I	CCNGG	2 cut(s)	137, 896
TaaI	ACNGT	6 cut(s)	90, 370, 460, 505, 877, 952
TaqI	TCGA	2 cut(s)	430, 955
TasI	AATT	5 cut(s)	52, 120, 277, 405, 653
TatI	WGTACW	5 cut(s)	85, 90, 383, 641, 1002
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	5 cut(s)	34, 65, 356, 421, 527
Tru1I	TTAA	4 cut(s)	591, 648, 666, 774
Tru9I	TTAA	4 cut(s)	591, 648, 666, 774
TscAI	CASTG	2 cut(s)	288, 576
TseFI	GTSAC	2 cut(s)	370, 413
TseI	GCWGC	3 cut(s)	346, 574, 909
Tsp45I	GTSAC	2 cut(s)	370, 413
TspGWI	ACGGA	1 cut(s)	794
TspRI	CASTG	2 cut(s)	288, 576
XapI	RAATTY	3 cut(s)	120, 277, 405
XbaI	TCTAGA	1 cut(s)	634
XceI	RCATGY	2 cut(s)	442, 736
XmiI	GTMKAC	1 cut(s)	977
XspI	CTAG	3 cut(s)	155, 635, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.