Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001632

Physical Location & Seq

Genomic Coordinates Reverse (-)

36101481 .. 36103421

Gene Structure 1941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G015750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAATTATGGTAGCAACACTTCTGCTGCTGAACATAACCGTTCAGATGGTAAAGAGAGAGACGTCCTGGATATGTTTCCTAGTGTCCATTTATATCGCTCGTATTCTCCTGCTCTACATGCTACTTGGAAGGGACGCTTCATCATTCTTGATTCTGAAACACCAGCTCAATTCATTGGTGGGTTCCAGGCACAACATCCGTGTACTGTACATCATAAAGCCTATAAGTTTTCACGAAAAATGCCTCCTGAATGTCCTGATCTTCAAGATGTTGGACTTTACTTTTTTCCTGATGATAACATTGCCAGATCAAGAGAGACATATGCTTTGCTGTTGGAGGTCATGGATACCCAAAATTCAGTGATGAGGGTTTACTTTGATGGAGTGGATGCTGTGGATTTGCTGATATTTACATCTAAACAGCTGCATTTAGACTCGCTGAATACTGTTACAAGTCCAAGTACAGAAAATTTCTTATGGGGAATTTTTTGTGATAAAACTCATTGTCGAGCTGACATTGATGACATTGGAACTACTGTTGATATGGAAGTTGACATGGCAGGTGGAAAGATGGTGGGAACCGTTGATGTAGTCGTTCCGAAAGATTCATCCACCCCTTGTAGAAGGCCTGAGCCTATCATGAAAGCAGTGCAGCAACTTTTGACTATTAAGGAGGAGGATTCTTCGTACCAGACCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

233

Amino Acids

26.29

Weight (kDa)

5.2

Isoelectric Point (pI)

49.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPOC_AIPP2	PF23121	43 - 83	9.7e-07	AIPP2, SPOC-like domain
SPOC_AIPP2	PF23121	84 - 163	9.6e-16	AIPP2, SPOC-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61090 AT5G61090 AT5G61120 AT5G61120 AT5G61120
fragaria_vesca	FvH4_4g13540 FvH4_4g13550 FvH4_5g13930 FvH4_5g13940 FvH4_5g13940 FvH4_5g13940
malus_domestica	MD06G1202200.v1.1 MD14G1211300.v1.1
prunus_persica	Prupe.5G204200_v2.0.a1 Prupe.5G204200_v2.0.a1 Prupe.5G204400_v2.0.a1
pyrus_communis	pycom06g17820
rosa_chinensis	RchiOBHm_Chr4g0414551 RchiOBHm_Chr4g0414561 RchiOBHm_Chr4g0414571 RchiOBHm_Chr7g0183021
rosa_laevigata	RLG00000005087
rosa_multiflora	Rmu_co8299331.1_g000001 Rmu_sc0000808.1_g000022 Rmu_sc0001063.1_g000013 Rmu_sc0005196.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240320 Rroxscaffold_3G00240450 Rroxscaffold_3G00270840
rosa_rugosa	Rorug06G0451800
rosa_samantha	Rh4AG186600 Rh4AG186700 Rh4BG173800 Rh4BG184200 Rh4CG197200 Rh4CG197500 Rh4DG181800 Rh4DG181900 Rh4DG183300 Rh7AG055300 Rh7AG324400 Rh7BG054700 Rh7BG309400 Rh7CG056000 Rh7CG341300 Rh7DG054800
rosa_wichuraiana	Rw4G015750 Rw7G027480 Rw7G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	551
AatII	GACGTC	1 cut(s)	66
Acc36I	ACCTGC	1 cut(s)	551
AcsI	RAATTY	3 cut(s)	355, 469, 483
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	4 cut(s)	205, 210, 463, 689
AgsI	TTSAA	1 cut(s)	266
AjnI	CCWGG	2 cut(s)	66, 186
AluBI	AGCT	3 cut(s)	167, 424, 512
AluI	AGCT	3 cut(s)	167, 424, 512
Alw26I	GTCTC	2 cut(s)	54, 311
AoxI	GGCC	1 cut(s)	626
ApeKI	GCWGC	3 cut(s)	26, 424, 652
ApoI	RAATTY	3 cut(s)	355, 469, 483
ArsI	GACNNNNNNTTYG	2 cut(s)	310, 342
BarI	GAAGNNNNNNTAC	1 cut(s)	36
BbvI	GCAGC	3 cut(s)	13, 411, 664
BccI	CCATC	3 cut(s)	41, 374, 565
BciT130I	CCWGG	2 cut(s)	68, 188
BciVI	GTATCC	1 cut(s)	340
BcoDI	GTCTC	2 cut(s)	54, 311
BfaI	CTAG	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	551
BfuI	GTATCC	1 cut(s)	340
BisI	GCNGC	3 cut(s)	27, 425, 653
BlsI	GCNGC	3 cut(s)	28, 426, 654
Bme1390I	CCNGG	2 cut(s)	68, 188
BmiI	GGNNCC	2 cut(s)	185, 580
BmrFI	CCNGG	2 cut(s)	68, 188
BmsI	GCATC	1 cut(s)	379
Bpu10I	CCTNAGC	1 cut(s)	630
BsaHI	GRCGYC	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	68, 188
BseGI	GGATG	3 cut(s)	196, 394, 608
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	621
BseRI	GAGGAG	1 cut(s)	689
BseXI	GCAGC	3 cut(s)	13, 411, 664
BsgI	GTGCAG	1 cut(s)	671
BshFI	GGCC	1 cut(s)	628
BslFI	GGGAC	1 cut(s)	147
BsmAI	GTCTC	2 cut(s)	54, 311
BsmBI	CGTCTC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	628
Bsp1407I	TGTACA	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	259, 308
BspANI	GGCC	1 cut(s)	628
BspCNI	CTCAG	1 cut(s)	622
BspHI	TCATGA	1 cut(s)	639
BspLI	GGNNCC	2 cut(s)	185, 580
BspMI	ACCTGC	1 cut(s)	551
BsrDI	GCAATG	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	208
BssMI	GATC	2 cut(s)	259, 308
BssNI	GRCGYC	1 cut(s)	63
Bst2UI	CCWGG	2 cut(s)	68, 188
Bst4CI	ACNGT	5 cut(s)	41, 208, 448, 538, 583
BstACI	GRCGYC	1 cut(s)	63
BstAUI	TGTACA	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	630
BstF5I	GGATG	3 cut(s)	196, 394, 608
BstKTI	GATC	2 cut(s)	262, 311
BstMAI	GTCTC	2 cut(s)	54, 311
BstMBI	GATC	2 cut(s)	259, 308
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	2 cut(s)	68, 188
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	2 cut(s)	66, 186
BstV1I	GCAGC	3 cut(s)	13, 411, 664
BsuI	GTATCC	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	628
BtsCI	GGATG	3 cut(s)	196, 394, 608
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	2 cut(s)	366, 654
BveI	ACCTGC	1 cut(s)	551
CciI	TCATGA	1 cut(s)	639
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	4 cut(s)	204, 209, 462, 688
CviAII	CATG	4 cut(s)	119, 343, 556, 640
CviJI	RGCY	6 cut(s)	167, 221, 424, 512, 628, 634
CviKI_1	RGCY	6 cut(s)	167, 221, 424, 512, 628, 634
CviQI	GTAC	4 cut(s)	204, 209, 462, 688
DdeI	CTNAG	1 cut(s)	630
DpnI	GATC	2 cut(s)	261, 310
DpnII	GATC	2 cut(s)	259, 308
Eco147I	AGGCCT	1 cut(s)	628
EcoRII	CCWGG	2 cut(s)	66, 186
Esp3I	CGTCTC	1 cut(s)	54
FaeI	CATG	4 cut(s)	122, 346, 559, 643
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	4 cut(s)	118, 342, 555, 639
FauNDI	CATATG	1 cut(s)	322
Fnu4HI	GCNGC	3 cut(s)	27, 425, 653
FokI	GGATG	3 cut(s)	183, 401, 595
Fsp4HI	GCNGC	3 cut(s)	27, 425, 653
FspBI	CTAG	1 cut(s)	81
GluI	GCNGC	3 cut(s)	27, 425, 653
HaeIII	GGCC	1 cut(s)	628
HgaI	GACGC	1 cut(s)	144
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	4 cut(s)	122, 346, 559, 643
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HinfI	GANTC	4 cut(s)	152, 434, 605, 680
Hpy166II	GTNNAC	3 cut(s)	204, 373, 553
Hpy188I	TCNGA	3 cut(s)	46, 157, 600
Hpy188III	TCNNGA	8 cut(s)	149, 234, 248, 257, 266, 290, 312, 640
Hpy8I	GTNNAC	3 cut(s)	204, 373, 553
HpyAV	CCTTC	2 cut(s)	124, 618
HpyCH4III	ACNGT	5 cut(s)	41, 208, 448, 538, 583
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	2 cut(s)	427, 652
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	630
HpySE526I	ACGT	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	4 cut(s)	122, 346, 559, 643
Kzo9I	GATC	2 cut(s)	259, 308
Lsp1109I	GCAGC	3 cut(s)	13, 411, 664
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	2 cut(s)	261, 310
MboI	GATC	2 cut(s)	259, 308
MboII	GAAGA	2 cut(s)	254, 675
MluCI	AATT	5 cut(s)	4, 170, 355, 469, 483
MlyI	GAGTC	1 cut(s)	428
MmeI	TCCRAC	2 cut(s)	253, 315
MnlI	CCTC	5 cut(s)	255, 331, 360, 667, 670
MseI	TTAA	1 cut(s)	669
MspA1I	CMGCKG	1 cut(s)	424
MspR9I	CCNGG	2 cut(s)	68, 188
MvaI	CCWGG	2 cut(s)	68, 188
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	2 cut(s)	259, 308
NlaIII	CATG	4 cut(s)	122, 346, 559, 643
NlaIV	GGNNCC	2 cut(s)	185, 580
NspI	RCATGY	1 cut(s)	122
PagI	TCATGA	1 cut(s)	639
PaqCI	CACCTGC	1 cut(s)	551
PceI	AGGCCT	1 cut(s)	628
PfeI	GAWTC	3 cut(s)	152, 605, 680
PfoI	TCCNGGA	1 cut(s)	66
PkrI	GCNGC	3 cut(s)	28, 426, 654
PleI	GAGTC	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	428
Psp6I	CCWGG	2 cut(s)	66, 186
PspGI	CCWGG	2 cut(s)	66, 186
PspN4I	GGNNCC	2 cut(s)	185, 580
PvuII	CAGCTG	1 cut(s)	424
RsaI	GTAC	4 cut(s)	205, 210, 463, 689
RsaNI	GTAC	4 cut(s)	204, 209, 462, 688
SaqAI	TTAA	1 cut(s)	669
SatI	GCNGC	3 cut(s)	27, 425, 653
Sau3AI	GATC	2 cut(s)	259, 308
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	2 cut(s)	68, 188
SetI	ASST	6 cut(s)	66, 169, 342, 426, 514, 565
SfaNI	GCATC	1 cut(s)	379
Sse9I	AATT	5 cut(s)	4, 170, 355, 469, 483
SseBI	AGGCCT	1 cut(s)	628
SspMI	CTAG	1 cut(s)	81
StuI	AGGCCT	1 cut(s)	628
StyD4I	CCNGG	2 cut(s)	66, 186
TaaI	ACNGT	5 cut(s)	41, 208, 448, 538, 583
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	508
TasI	AATT	5 cut(s)	4, 170, 355, 469, 483
TatI	WGTACW	3 cut(s)	203, 208, 461
TfiI	GAWTC	3 cut(s)	152, 605, 680
Tru1I	TTAA	1 cut(s)	669
Tru9I	TTAA	1 cut(s)	669
TscAI	CASTG	2 cut(s)	366, 654
TseI	GCWGC	3 cut(s)	26, 424, 652
TspDTI	ATGAA	5 cut(s)	17, 130, 163, 597, 656
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	2 cut(s)	366, 654
XapI	RAATTY	3 cut(s)	355, 469, 483
XceI	RCATGY	1 cut(s)	122
XspI	CTAG	1 cut(s)	81
ZraI	GACGTC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.