Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005196.1

Orthogroup ID

OG0001632

Physical Location & Seq

Genomic Coordinates Reverse (-)

5923 .. 8359

Gene Structure 2437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005196.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atgttatatccaaatgtgaggatcagtcatacaagtaggggtgccaatggagttgctcattcccttgcagaccatgctaaggctcgtcagcaagagactttttacttttctgtacctacttttcttttagctgctcttgcagctgactctattgctttttattgcatccgggttaatccctccttggttgaggactgggatccagacaattgggtatgcaaatcatgtgaacagggcaatggtatgcgttctccaaactctagtattaaggaagacacattagagtcatcaaccggtagaggccactatgatggcatgcattcagcaggtcccagcaaaaattgtaatggttcaaggtggcaagctcactctaagaaacaaaagcctgttgtgaatgaaaaagttaagttcattacaaatgaagaagtcaggagactatctttggcagacccgcctcagaagactcttgttaggtacaaaactattactccaaagtctcctatttcttcgggggttaaagcaaatcctagctttatacgttcagaaattgcgatgcctagtggacatggtaggccccccaagatgcaaagtatctcaaagattaatcagcaagcatgtcaaaatttaaaacattcagaaggtgatagatctttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

218

Amino Acids

24.14

Weight (kDa)

9.51

Isoelectric Point (pI)

57.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61090 AT5G61090 AT5G61120 AT5G61120 AT5G61120
fragaria_vesca	FvH4_4g13540 FvH4_4g13550 FvH4_5g13930 FvH4_5g13940 FvH4_5g13940 FvH4_5g13940
malus_domestica	MD06G1202200.v1.1 MD14G1211300.v1.1
prunus_persica	Prupe.5G204200_v2.0.a1 Prupe.5G204200_v2.0.a1 Prupe.5G204400_v2.0.a1
pyrus_communis	pycom06g17820
rosa_chinensis	RchiOBHm_Chr4g0414551 RchiOBHm_Chr4g0414561 RchiOBHm_Chr4g0414571 RchiOBHm_Chr7g0183021
rosa_laevigata	RLG00000005087
rosa_multiflora	Rmu_co8299331.1_g000001 Rmu_sc0000808.1_g000022 Rmu_sc0001063.1_g000013 Rmu_sc0005196.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240320 Rroxscaffold_3G00240450 Rroxscaffold_3G00270840
rosa_rugosa	Rorug06G0451800
rosa_samantha	Rh4AG186600 Rh4AG186700 Rh4BG173800 Rh4BG184200 Rh4CG197200 Rh4CG197500 Rh4DG181800 Rh4DG181900 Rh4DG183300 Rh7AG055300 Rh7AG324400 Rh7BG054700 Rh7BG309400 Rh7CG056000 Rh7CG341300 Rh7DG054800
rosa_wichuraiana	Rw4G015750 Rw7G027480 Rw7G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	317
AccB1I	GGYRCC	1 cut(s)	41
AciI	CCGC	1 cut(s)	452
AclWI	GGATC	3 cut(s)	29, 194, 207
AcsI	RAATTY	1 cut(s)	622
AfaI	GTAC	2 cut(s)	114, 476
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgeI	ACCGGT	1 cut(s)	293
AgsI	TTSAA	1 cut(s)	354
AluBI	AGCT	4 cut(s)	131, 143, 365, 531
AluI	AGCT	4 cut(s)	131, 143, 365, 531
Alw26I	GTCTC	3 cut(s)	89, 427, 501
AlwI	GGATC	3 cut(s)	29, 194, 207
AoxI	GGCC	2 cut(s)	301, 572
ApeKI	GCWGC	2 cut(s)	131, 140
ApoI	RAATTY	1 cut(s)	622
AseI	ATTAAT	1 cut(s)	603
AsiGI	ACCGGT	1 cut(s)	293
AspS9I	GGNCC	2 cut(s)	329, 573
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	653
AvaII	GGWCC	1 cut(s)	329
BamHI	GGATCC	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	41
BbsI	GAAGAC	2 cut(s)	279, 467
BbvI	GCAGC	2 cut(s)	118, 152
BccI	CCATC	1 cut(s)	305
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	3 cut(s)	89, 427, 501
BfaI	CTAG	3 cut(s)	261, 528, 558
BfuAI	ACCTGC	1 cut(s)	317
BglII	AGATCT	1 cut(s)	647
BisI	GCNGC	2 cut(s)	132, 141
BlsI	GCNGC	2 cut(s)	133, 142
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	2 cut(s)	329, 573
BmiI	GGNNCC	4 cut(s)	43, 201, 331, 575
BmrFI	CCNGG	1 cut(s)	170
BmrI	ACTGGG	1 cut(s)	205
BmsI	GCATC	3 cut(s)	174, 543, 573
BmuI	ACTGGG	1 cut(s)	205
BpiI	GAAGAC	2 cut(s)	279, 467
Bpu10I	CCTNAGC	1 cut(s)	78
BpuMI	CCSGG	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	293
BsaXI	ACNNNNNCTCC	2 cut(s)	472, 502
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse118I	RCCGGY	1 cut(s)	293
Bse1I	ACTGG	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	470
BseNI	ACTGG	1 cut(s)	200
BseXI	GCAGC	2 cut(s)	118, 152
BseYI	CCCAGC	1 cut(s)	332
BshFI	GGCC	2 cut(s)	303, 574
BshNI	GGYRCC	1 cut(s)	41
BshTI	ACCGGT	1 cut(s)	293
BsiSI	CCGG	2 cut(s)	169, 294
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	3 cut(s)	89, 427, 501
BsmFI	GGGAC	1 cut(s)	315
BsmI	GAATGC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	303, 574
Bsp143I	GATC	3 cut(s)	21, 199, 647
BspACI	CCGC	1 cut(s)	452
BspANI	GGCC	2 cut(s)	303, 574
BspCNI	CTCAG	1 cut(s)	469
BspLI	GGNNCC	4 cut(s)	43, 201, 331, 575
BspMI	ACCTGC	1 cut(s)	317
BspPI	GGATC	3 cut(s)	29, 194, 207
BspT107I	GGYRCC	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	244
BsrFI	RCCGGY	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	3 cut(s)	21, 199, 647
BssT1I	CCWWGG	1 cut(s)	183
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstC8I	GCNNGC	3 cut(s)	317, 363, 612
BstDEI	CTNAG	3 cut(s)	78, 372, 456
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	3 cut(s)	24, 202, 650
BstMAI	GTCTC	3 cut(s)	89, 427, 501
BstMBI	GATC	3 cut(s)	21, 199, 647
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 137, 140
BstNSI	RCATGY	2 cut(s)	319, 618
BstSCI	CCNGG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	118, 152
BstV2I	GAAGAC	2 cut(s)	279, 467
BstX2I	RGATCY	2 cut(s)	199, 647
BstXI	CCANNNNNNTGG	2 cut(s)	210, 311
BstYI	RGATCY	2 cut(s)	199, 647
BsuRI	GGCC	2 cut(s)	303, 574
BtgZI	GCGATG	1 cut(s)	566
BtsCI	GGATG	1 cut(s)	165
BveI	ACCTGC	1 cut(s)	317
Cac8I	GCNNGC	3 cut(s)	317, 363, 612
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	2 cut(s)	329, 573
Csp6I	GTAC	2 cut(s)	113, 475
CspAI	ACCGGT	1 cut(s)	293
CviAII	CATG	5 cut(s)	74, 225, 316, 566, 615
CviJI	RGCY	8 cut(s)	83, 131, 143, 303, 365, 385, 531, 574
CviKI_1	RGCY	8 cut(s)	83, 131, 143, 303, 365, 385, 531, 574
CviQI	GTAC	2 cut(s)	113, 475
DdeI	CTNAG	3 cut(s)	78, 372, 456
DpnI	GATC	3 cut(s)	23, 201, 649
DpnII	GATC	3 cut(s)	21, 199, 647
DraI	TTTAAA	1 cut(s)	627
Eco130I	CCWWGG	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	329
EcoO109I	RGGNCCY	2 cut(s)	329, 573
EcoT14I	CCWWGG	1 cut(s)	183
EcoT22I	ATGCAT	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	5 cut(s)	77, 228, 319, 569, 618
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	5 cut(s)	73, 224, 315, 565, 614
FauI	CCCGC	1 cut(s)	459
Fnu4HI	GCNGC	2 cut(s)	132, 141
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	2 cut(s)	132, 141
FspBI	CTAG	3 cut(s)	261, 528, 558
GluI	GCNGC	2 cut(s)	132, 141
GsaI	CCCAGC	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	303, 574
HapII	CCGG	2 cut(s)	169, 294
Hin1II	CATG	5 cut(s)	77, 228, 319, 569, 618
HinfI	GANTC	3 cut(s)	146, 284, 463
HpaII	CCGG	2 cut(s)	169, 294
HphI	GGTGA	1 cut(s)	653
Hpy166II	GTNNAC	2 cut(s)	230, 563
Hpy188I	TCNGA	3 cut(s)	459, 544, 637
Hpy188III	TCNNGA	2 cut(s)	203, 430
Hpy8I	GTNNAC	2 cut(s)	230, 563
HpyAV	CCTTC	1 cut(s)	632
HpyCH4IV	ACGT	1 cut(s)	538
HpyCH4V	TGCA	6 cut(s)	68, 140, 165, 219, 319, 586
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 137, 140
HpyF3I	CTNAG	3 cut(s)	78, 372, 456
HpySE526I	ACGT	1 cut(s)	538
Hsp92II	CATG	5 cut(s)	77, 228, 319, 569, 618
Kzo9I	GATC	3 cut(s)	21, 199, 647
LpnPI	CCDG	9 cut(s)	181, 182, 216, 218, 307, 312, 346, 399, 415
Lsp1109I	GCAGC	2 cut(s)	118, 152
LweI	GCATC	3 cut(s)	174, 543, 573
MaeI	CTAG	3 cut(s)	261, 528, 558
MaeII	ACGT	1 cut(s)	538
MalI	GATC	3 cut(s)	23, 201, 649
MboI	GATC	3 cut(s)	21, 199, 647
MboII	GAAGA	4 cut(s)	284, 434, 472, 498
MfeI	CAATTG	1 cut(s)	208
MflI	RGATCY	2 cut(s)	199, 647
MluCI	AATT	4 cut(s)	208, 340, 546, 622
MlyI	GAGTC	3 cut(s)	140, 293, 457
MnlI	CCTC	5 cut(s)	12, 184, 190, 293, 465
Mph1103I	ATGCAT	1 cut(s)	321
MseI	TTAA	7 cut(s)	174, 267, 405, 516, 603, 626, 655
MslI	CAYNNNNRTG	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	2 cut(s)	169, 294
MspR9I	CCNGG	1 cut(s)	170
MunI	CAATTG	1 cut(s)	208
Mva1269I	GAATGC	1 cut(s)	319
MwoI	GCNNNNNNNGC	3 cut(s)	74, 137, 140
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	3 cut(s)	21, 199, 647
NlaIII	CATG	5 cut(s)	77, 228, 319, 569, 618
NlaIV	GGNNCC	4 cut(s)	43, 201, 331, 575
NsiI	ATGCAT	1 cut(s)	321
NspI	RCATGY	2 cut(s)	319, 618
PaeI	GCATGC	1 cut(s)	319
PctI	GAATGC	1 cut(s)	319
PinAI	ACCGGT	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	133, 142
PleI	GAGTC	3 cut(s)	140, 292, 457
PpsI	GAGTC	3 cut(s)	140, 292, 457
PpuMI	RGGWCCY	1 cut(s)	329
PshBI	ATTAAT	1 cut(s)	603
Psp5II	RGGWCCY	1 cut(s)	329
PspFI	CCCAGC	1 cut(s)	332
PspN4I	GGNNCC	4 cut(s)	43, 201, 331, 575
PspPI	GGNCC	2 cut(s)	329, 573
PspPPI	RGGWCCY	1 cut(s)	329
PsuI	RGATCY	2 cut(s)	199, 647
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	2 cut(s)	114, 476
RsaNI	GTAC	2 cut(s)	113, 475
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	7 cut(s)	174, 267, 405, 516, 603, 626, 655
SatI	GCNGC	2 cut(s)	132, 141
Sau3AI	GATC	3 cut(s)	21, 199, 647
Sau96I	GGNCC	2 cut(s)	329, 573
SchI	GAGTC	3 cut(s)	140, 293, 457
ScrFI	CCNGG	1 cut(s)	170
SfaNI	GCATC	3 cut(s)	174, 543, 573
SinI	GGWCC	1 cut(s)	329
SmiMI	CAYNNNNRTG	1 cut(s)	309
SphI	GCATGC	1 cut(s)	319
Sse9I	AATT	4 cut(s)	208, 340, 546, 622
SsiI	CCGC	1 cut(s)	452
SspMI	CTAG	3 cut(s)	261, 528, 558
StyD4I	CCNGG	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	183
TaiI	ACGT	1 cut(s)	541
TasI	AATT	4 cut(s)	208, 340, 546, 622
Tru1I	TTAA	7 cut(s)	174, 267, 405, 516, 603, 626, 655
Tru9I	TTAA	7 cut(s)	174, 267, 405, 516, 603, 626, 655
TseI	GCWGC	2 cut(s)	131, 140
TspDTI	ATGAA	3 cut(s)	400, 411, 435
VpaK11BI	GGWCC	1 cut(s)	329
VspI	ATTAAT	1 cut(s)	603
XapI	RAATTY	1 cut(s)	622
XceI	RCATGY	2 cut(s)	319, 618
XspI	CTAG	3 cut(s)	261, 528, 558
Zsp2I	ATGCAT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.