Rh4CG197500

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001632
Physical Location & Seq
Reverse (-)
42114100 .. 42135640
21541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG197500.1

Sequence Viewer

Length: 1281 bp
ATGCGTTCTCCAAACTCTAGTATTAAGGAAGACACATTAGAGTCATCAACCGGTAGAGGCCACTATGATGGCATGCATTCAGCAGGTCCCAGCAAAAATTGTAATGGTTCAAGGTGGCAAGCTCACTCTAAGAAACAAAAGCCTGTTGTGAATGAAAAAGTTAAGTTCATTACAAATGAAGAAGTCAGGAGACTATCTTTGGCAGACCCGCCTCAGAAGACTCTTGTTAGGTACAAAACTATTACTCCAAAGTCTCCTATTTCTTCGGGGGTTAAAGCAAATCCTAGCTTTATACGTTCAGAAATTGCGATGCCTAGTGGACATGCCGATGTCTTCTTCATTCCTGCAACAGAGCCTGCAACAGAAATTGCGATGCCTCGTGGACATGGTAGGCCCCCCAAGATGCAAAGCATCTCAAAGATTAATCAGCAAGCATGTCAAAATTTAAAACATTCAGAAGATGCTGAAACTTGTAAGAAGAAGGAGACTGCTTCAAAAAAGAAGTCACCCATAGTTACAACATTGAGGAACTTCTCACCTATATCCAGTCCAGGAGGCAACACTTCTGCTGCTGAACATAATCATTCAGATGATAGAGAAAGACACCGCCTGAATAAATTGCTTCTTTGGGCTGATCCCTTCCGAGGGGAATGTCCTGATCTTCAAGATGTTGGACTTTACTTTTTCCCTGATGATAACATTGCCAGATCAAGAGAGACCAATGCTTTGCTGTTGGAGGTCATGGATACCCAAAATTCAGTGATGAGGATTTACTTTGATGGAGTGGATGCTGTGGATTTGTTGATATTTACATCTAAACAGCTGCATTTAGACTTGCTGAATACTGTTATAAGTCCAAAGGAGCCTATCATGAAGGATGAGCATTCTGCATCCTCGGCGTGTTGCATGCAAGTGAAGTTGGAGAAGGATGAGGATGAAACCTGCCTTAAAACGGACAAGAAAACACTCCCATGTTTGCCATGCTTTCCTGGGCCTAGCGCTCAAAGTGTTGCTGGATCAACTGATGAAATGGACAAACCTGGTGATATAAGTGCTGGATTTACTGATCGAGGCATTGCTTCTGAAGAAGTTATAACATGCTCTAAATGCAGAATAGCTCGTGAACATATGTCATTTGATAAAAAAATATTCAGTTACTCGATTGAAGCCATGCAATGCCTCAGCAATTGCTTTCATGTTTCAAGAGAAAGATTTACCACTGGGAGTGCGCCTGTGTGGGAGTCTCATGTTGTGCAAGTTAAATCACTTCTCCTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

426

Amino Acids

47.27

Weight (kDa)

7.91

Isoelectric Point (pI)

50.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 204 - 278 1.4e-13 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 851, 1094
Acc36I ACCTGC 2 cut(s) 74, 950
AciI CCGC 2 cut(s) 209, 607
AclWI GGATC 2 cut(s) 629, 1024
AcsI RAATTY 2 cut(s) 442, 754
AcuI CTGAAG 1 cut(s) 1104
AfaI GTAC 1 cut(s) 233
AfeI AGCGCT 1 cut(s) 1000
AfiI CCNNNNNNNGG 3 cut(s) 644, 645, 952
AgeI ACCGGT 1 cut(s) 50
AgsI TTSAA 5 cut(s) 111, 495, 665, 1166, 1203
AjnI CCWGG 3 cut(s) 550, 988, 1039
AluBI AGCT 4 cut(s) 122, 288, 823, 1118
AluI AGCT 4 cut(s) 122, 288, 823, 1118
Alw26I GTCTC 5 cut(s) 184, 258, 479, 710, 1248
AlwI GGATC 2 cut(s) 629, 1024
AlwNI CAGNNNCTG 1 cut(s) 356
Aor51HI AGCGCT 1 cut(s) 1000
AoxI GGCC 3 cut(s) 58, 392, 992
ApeKI GCWGC 2 cut(s) 569, 823
ApoI RAATTY 2 cut(s) 442, 754
ArsI GACNNNNNNTTYG 4 cut(s) 488, 520, 709, 741
AseI ATTAAT 1 cut(s) 423
AsiGI ACCGGT 1 cut(s) 50
AspLEI GCGC 2 cut(s) 1001, 1231
AspS9I GGNCC 3 cut(s) 86, 393, 992
AsuHPI GGTGA 3 cut(s) 498, 528, 1055
AvaII GGWCC 1 cut(s) 86
BauI CACGAG 2 cut(s) 378, 1119
BbsI GAAGAC 3 cut(s) 36, 224, 325
BbvCI CCTCAGC 1 cut(s) 1181
BbvI GCAGC 2 cut(s) 556, 810
BccI CCATC 2 cut(s) 62, 773
BciT130I CCWGG 3 cut(s) 552, 990, 1041
BciVI GTATCC 1 cut(s) 739
BcoDI GTCTC 5 cut(s) 184, 258, 479, 710, 1248
BfaI CTAG 4 cut(s) 18, 285, 315, 996
BfoI RGCGCY 1 cut(s) 1002
BfuAI ACCTGC 2 cut(s) 74, 950
BfuI GTATCC 1 cut(s) 739
BisI GCNGC 2 cut(s) 570, 824
BlsI GCNGC 2 cut(s) 571, 825
Bme1390I CCNGG 3 cut(s) 552, 990, 1041
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 3 cut(s) 86, 393, 992
BmiI GGNNCC 3 cut(s) 88, 395, 864
BmrFI CCNGG 3 cut(s) 552, 990, 1041
BmrI ACTGGG 1 cut(s) 1230
BmsI GCATC 7 cut(s) 300, 363, 393, 420, 451, 778, 899
BmuI ACTGGG 1 cut(s) 1230
BpiI GAAGAC 3 cut(s) 36, 224, 325
Bpu10I CCTNAGC 1 cut(s) 1181
BsaI GGTCTC 1 cut(s) 710
BsaJI CCNNGG 3 cut(s) 643, 894, 989
BsaWI WCCGGW 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bsc4I CCNNNNNNNGG 3 cut(s) 644, 645, 952
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 2 cut(s) 546, 1225
Bse3DI GCAATG 3 cut(s) 699, 1074, 1181
BseBI CCWGG 3 cut(s) 552, 990, 1041
BseDI CCNNGG 3 cut(s) 643, 894, 989
BseGI GGATG 5 cut(s) 793, 883, 890, 934, 940
BseLI CCNNNNNNNGG 3 cut(s) 644, 645, 952
BseMI GCAATG 3 cut(s) 699, 1074, 1181
BseMII CTCAG 2 cut(s) 227, 1195
BseNI ACTGG 2 cut(s) 546, 1225
BseRI GAGGAG 1 cut(s) 1262
BseXI GCAGC 2 cut(s) 556, 810
BseYI CCCAGC 1 cut(s) 89
BshFI GGCC 3 cut(s) 60, 394, 994
BshTI ACCGGT 1 cut(s) 50
BsiSI CCGG 1 cut(s) 51
BslFI GGGAC 1 cut(s) 72
BslI CCNNNNNNNGG 3 cut(s) 644, 645, 952
BsmAI GTCTC 5 cut(s) 184, 258, 479, 710, 1248
BsmFI GGGAC 1 cut(s) 72
BsmI GAATGC 2 cut(s) 76, 883
BsnI GGCC 3 cut(s) 60, 394, 994
Bso31I GGTCTC 1 cut(s) 710
Bsp143I GATC 5 cut(s) 634, 658, 707, 1016, 1066
BspACI CCGC 2 cut(s) 209, 607
BspANI GGCC 3 cut(s) 60, 394, 994
BspCNI CTCAG 2 cut(s) 226, 1194
BspHI TCATGA 1 cut(s) 870
BspLI GGNNCC 3 cut(s) 88, 395, 864
BspMI ACCTGC 2 cut(s) 74, 950
BspPI GGATC 2 cut(s) 629, 1024
BspTNI GGTCTC 1 cut(s) 710
BsrDI GCAATG 3 cut(s) 699, 1074, 1181
BsrFI RCCGGY 1 cut(s) 50
BsrI ACTGG 2 cut(s) 546, 1225
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 3 cut(s) 643, 894, 989
BssMI GATC 5 cut(s) 634, 658, 707, 1016, 1066
BssSI CACGAG 2 cut(s) 378, 1119
Bst2BI CACGAG 2 cut(s) 378, 1119
Bst2UI CCWGG 3 cut(s) 552, 990, 1041
Bst4CI ACNGT 1 cut(s) 847
BstC8I GCNNGC 5 cut(s) 74, 120, 357, 432, 908
BstDEI CTNAG 3 cut(s) 129, 213, 1181
BstF5I GGATG 5 cut(s) 793, 883, 890, 934, 940
BstH2I RGCGCY 1 cut(s) 1002
BstHHI GCGC 2 cut(s) 1001, 1231
BstKTI GATC 5 cut(s) 637, 661, 710, 1019, 1069
BstMAI GTCTC 5 cut(s) 184, 258, 479, 710, 1248
BstMBI GATC 5 cut(s) 634, 658, 707, 1016, 1066
BstMWI GCNNNNNNNGC 2 cut(s) 896, 1107
BstNI CCWGG 3 cut(s) 552, 990, 1041
BstNSI RCATGY 5 cut(s) 76, 326, 438, 910, 1101
BstSCI CCNGG 3 cut(s) 550, 988, 1039
BstV1I GCAGC 2 cut(s) 556, 810
BstV2I GAAGAC 3 cut(s) 36, 224, 325
BstXI CCANNNNNNTGG 1 cut(s) 68
BsuI GTATCC 1 cut(s) 739
BsuRI GGCC 3 cut(s) 60, 394, 994
BtgZI GCGATG 2 cut(s) 323, 386
BtsCI GGATG 5 cut(s) 793, 883, 890, 934, 940
BtsIMutI CAGTG 2 cut(s) 765, 1218
BveI ACCTGC 2 cut(s) 74, 950
Cac8I GCNNGC 5 cut(s) 74, 120, 357, 432, 908
CaiI CAGNNNCTG 1 cut(s) 356
CciI TCATGA 1 cut(s) 870
CfoI GCGC 2 cut(s) 1001, 1231
Cfr10I RCCGGY 1 cut(s) 50
Cfr13I GGNCC 3 cut(s) 86, 393, 992
CsiI ACCWGGT 1 cut(s) 1039
Csp6I GTAC 1 cut(s) 232
CspAI ACCGGT 1 cut(s) 50
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 3 cut(s) 129, 213, 1181
DpnI GATC 5 cut(s) 636, 660, 709, 1018, 1068
DpnII GATC 5 cut(s) 634, 658, 707, 1016, 1066
DraI TTTAAA 1 cut(s) 447
Eco31I GGTCTC 1 cut(s) 710
Eco47I GGWCC 1 cut(s) 86
Eco47III AGCGCT 1 cut(s) 1000
Eco57I CTGAAG 1 cut(s) 1104
EcoO109I RGGNCCY 2 cut(s) 86, 393
EcoRII CCWGG 3 cut(s) 550, 988, 1039
EcoT22I ATGCAT 1 cut(s) 78
FaqI GGGAC 1 cut(s) 72
FauI CCCGC 1 cut(s) 216
FauNDI CATATG 1 cut(s) 1128
Fnu4HI GCNGC 2 cut(s) 570, 824
FokI GGATG 5 cut(s) 800, 877, 890, 941, 947
Fsp4HI GCNGC 2 cut(s) 570, 824
FspBI CTAG 4 cut(s) 18, 285, 315, 996
GlaI GCGC 2 cut(s) 1000, 1230
GluI GCNGC 2 cut(s) 570, 824
GsaI CCCAGC 1 cut(s) 93
HaeII RGCGCY 1 cut(s) 1002
HaeIII GGCC 3 cut(s) 60, 394, 994
HapII CCGG 1 cut(s) 51
HhaI GCGC 2 cut(s) 1001, 1231
Hin6I GCGC 2 cut(s) 999, 1229
HinP1I GCGC 2 cut(s) 999, 1229
HinfI GANTC 3 cut(s) 41, 220, 1241
HpaII CCGG 1 cut(s) 51
HphI GGTGA 3 cut(s) 498, 528, 1055
Hpy166II GTNNAC 3 cut(s) 320, 383, 1124
Hpy188I TCNGA 6 cut(s) 216, 301, 457, 589, 644, 1084
Hpy188III TCNNGA 7 cut(s) 187, 656, 665, 711, 871, 1121, 1203
Hpy8I GTNNAC 3 cut(s) 320, 383, 1124
HpyAV CCTTC 4 cut(s) 475, 649, 868, 919
HpyCH4III ACNGT 1 cut(s) 847
HpyCH4IV ACGT 1 cut(s) 295
HpyF10VI GCNNNNNNNGC 2 cut(s) 896, 1107
HpyF3I CTNAG 3 cut(s) 129, 213, 1181
HpySE526I ACGT 1 cut(s) 295
HspAI GCGC 2 cut(s) 999, 1229
Kzo9I GATC 5 cut(s) 634, 658, 707, 1016, 1066
LmnI GCTCC 1 cut(s) 862
Lsp1109I GCAGC 2 cut(s) 556, 810
LweI GCATC 7 cut(s) 300, 363, 393, 420, 451, 778, 899
MabI ACCWGGT 1 cut(s) 1039
MaeI CTAG 4 cut(s) 18, 285, 315, 996
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 3 cut(s) 504, 514, 1154
MalI GATC 5 cut(s) 636, 660, 709, 1018, 1068
MboI GATC 5 cut(s) 634, 658, 707, 1016, 1066
MfeI CAATTG 1 cut(s) 1186
MluCI AATT 7 cut(s) 97, 303, 366, 442, 617, 754, 1186
MlyI GAGTC 3 cut(s) 50, 214, 1250
MmeI TCCRAC 3 cut(s) 652, 714, 900
Mph1103I ATGCAT 1 cut(s) 78
MseI TTAA 8 cut(s) 24, 162, 273, 423, 446, 948, 1260, 1279
MslI CAYNNNNRTG 5 cut(s) 66, 327, 588, 911, 970
MspA1I CMGCKG 1 cut(s) 823
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 3 cut(s) 552, 990, 1041
MunI CAATTG 1 cut(s) 1186
Mva1269I GAATGC 2 cut(s) 76, 883
MvaI CCWGG 3 cut(s) 552, 990, 1041
MwoI GCNNNNNNNGC 2 cut(s) 896, 1107
NdeI CATATG 1 cut(s) 1128
NdeII GATC 5 cut(s) 634, 658, 707, 1016, 1066
NlaIV GGNNCC 3 cut(s) 88, 395, 864
NmeAIII GCCGAG 1 cut(s) 875
NmuCI GTSAC 1 cut(s) 504
NsiI ATGCAT 1 cut(s) 78
NspI RCATGY 5 cut(s) 76, 326, 438, 910, 1101
PaeI GCATGC 2 cut(s) 76, 910
PagI TCATGA 1 cut(s) 870
PctI GAATGC 2 cut(s) 76, 883
PfoI TCCNGGA 1 cut(s) 550
PinAI ACCGGT 1 cut(s) 50
PkrI GCNGC 2 cut(s) 571, 825
PleI GAGTC 3 cut(s) 49, 214, 1249
PpsI GAGTC 3 cut(s) 49, 214, 1249
PpuMI RGGWCCY 1 cut(s) 86
PshBI ATTAAT 1 cut(s) 423
PsiI TTATAA 2 cut(s) 851, 1094
Psp5II RGGWCCY 1 cut(s) 86
Psp6I CCWGG 3 cut(s) 550, 988, 1039
PspFI CCCAGC 1 cut(s) 89
PspGI CCWGG 3 cut(s) 550, 988, 1039
PspN4I GGNNCC 3 cut(s) 88, 395, 864
PspPI GGNCC 3 cut(s) 86, 393, 992
PspPPI RGGWCCY 1 cut(s) 86
PstNI CAGNNNCTG 1 cut(s) 356
PvuII CAGCTG 1 cut(s) 823
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
RseI CAYNNNNRTG 5 cut(s) 66, 327, 588, 911, 970
SaqAI TTAA 8 cut(s) 24, 162, 273, 423, 446, 948, 1260, 1279
SatI GCNGC 2 cut(s) 570, 824
Sau3AI GATC 5 cut(s) 634, 658, 707, 1016, 1066
Sau96I GGNCC 3 cut(s) 86, 393, 992
SchI GAGTC 3 cut(s) 50, 214, 1250
ScrFI CCNGG 3 cut(s) 552, 990, 1041
SexAI ACCWGGT 1 cut(s) 1039
SfaNI GCATC 7 cut(s) 300, 363, 393, 420, 451, 778, 899
SinI GGWCC 1 cut(s) 86
SmiMI CAYNNNNRTG 5 cut(s) 66, 327, 588, 911, 970
SphI GCATGC 2 cut(s) 76, 910
Sse9I AATT 7 cut(s) 97, 303, 366, 442, 617, 754, 1186
SsiI CCGC 2 cut(s) 209, 607
SspI AATATT 1 cut(s) 1149
SspMI CTAG 4 cut(s) 18, 285, 315, 996
StyD4I CCNGG 3 cut(s) 550, 988, 1039
TaaI ACNGT 1 cut(s) 847
TaiI ACGT 1 cut(s) 298
TaqI TCGA 2 cut(s) 1069, 1160
TasI AATT 7 cut(s) 97, 303, 366, 442, 617, 754, 1186
Tru1I TTAA 8 cut(s) 24, 162, 273, 423, 446, 948, 1260, 1279
Tru9I TTAA 8 cut(s) 24, 162, 273, 423, 446, 948, 1260, 1279
TscAI CASTG 2 cut(s) 765, 1225
TseFI GTSAC 1 cut(s) 504
TseI GCWGC 2 cut(s) 569, 823
Tsp45I GTSAC 1 cut(s) 504
TspDTI ATGAA 8 cut(s) 157, 168, 192, 328, 887, 951, 1041, 1184
TspGWI ACGGA 1 cut(s) 968
TspRI CASTG 2 cut(s) 765, 1225
VpaK11BI GGWCC 1 cut(s) 86
VspI ATTAAT 1 cut(s) 423
XapI RAATTY 2 cut(s) 442, 754
XceI RCATGY 5 cut(s) 76, 326, 438, 910, 1101
XspI CTAG 4 cut(s) 18, 285, 315, 996
Zsp2I ATGCAT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.