Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001632

Physical Location & Seq

Genomic Coordinates Reverse (-)

39058568 .. 39060271

Gene Structure 1704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38494

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAGTTTTCATGAAATTTGCCTCCTGTCTTCCGGGCCGCTTTGCTTCCTAGATTGCTTCTTTGGGCTGATCCCTTCTGAGAGGAATGTCCTGATCTTCAAGATGTTGGACTTTACTTTTTCCCTGATGATAACATTGCCAGATCAAGAGAGACCTATCATGGATACCCAGAATTCAGTGATGAGGATTTACTTTGATGGAGTGGATGCTGTGGATTTGTTGATATTTACATCTAAACAGCTGCATTTAGATTCGCTGAAAACCGTGACAAGTCCAAGTACAGAAAACTTCTTATGGGGAATTTTTCATGACAAGAATCATTGTCGAGCTGACATGTATGACAATGGAACTACTGTTGATATGGAAGTTGACATGGCTGGTGGAAAGATGGTTGGAACCGTTGATGTGGTTGTTCTGAAAGATTCATCCACCCGTTGTAGAAGGCCTGACCCTATCATGAAAGCAGTGCAGCAACTTTTGACTATTAAGAAGGAGGAGCATTCTTCATACCTGACCAGATTGAGGGTTCTAGATTGTACTATTAAACAATTGTTGGCATTTAACTCAGAGGAGCCTATCATGAAGGATGAGCATTCTGCATCATTGGAAATGAAGACGGTGTGTAGCATGCAAGTGAAGTTGGAGAAAGATGAGGATGAAACCTGCCTTAAAACGGACAAGAAAACACTCCCATGTTTGCCATGCCTGAGCCTAGCTCTCAAAGTGTTGCTGGCTCAACTGATAAAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

250

Amino Acids

28.46

Weight (kDa)

5.41

Isoelectric Point (pI)

33.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61090 AT5G61090 AT5G61120 AT5G61120 AT5G61120
fragaria_vesca	FvH4_4g13540 FvH4_4g13550 FvH4_5g13930 FvH4_5g13940 FvH4_5g13940 FvH4_5g13940
malus_domestica	MD06G1202200.v1.1 MD14G1211300.v1.1
prunus_persica	Prupe.5G204200_v2.0.a1 Prupe.5G204200_v2.0.a1 Prupe.5G204400_v2.0.a1
pyrus_communis	pycom06g17820
rosa_chinensis	RchiOBHm_Chr4g0414551 RchiOBHm_Chr4g0414561 RchiOBHm_Chr4g0414571 RchiOBHm_Chr7g0183021
rosa_laevigata	RLG00000005087
rosa_multiflora	Rmu_co8299331.1_g000001 Rmu_sc0000808.1_g000022 Rmu_sc0001063.1_g000013 Rmu_sc0005196.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240320 Rroxscaffold_3G00240450 Rroxscaffold_3G00270840
rosa_rugosa	Rorug06G0451800
rosa_samantha	Rh4AG186600 Rh4AG186700 Rh4BG173800 Rh4BG184200 Rh4CG197200 Rh4CG197500 Rh4DG181800 Rh4DG181900 Rh4DG183300 Rh7AG055300 Rh7AG324400 Rh7BG054700 Rh7BG309400 Rh7CG056000 Rh7CG341300 Rh7DG054800
rosa_wichuraiana	Rw4G015750 Rw7G027480 Rw7G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	671
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	1 cut(s)	64
AcsI	RAATTY	3 cut(s)	15, 172, 300
AfaI	GTAC	2 cut(s)	280, 538
AfiI	CCNNNNNNNGG	2 cut(s)	522, 673
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	100
AluBI	AGCT	3 cut(s)	241, 329, 716
AluI	AGCT	3 cut(s)	241, 329, 716
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	1 cut(s)	64
AoxI	GGCC	2 cut(s)	35, 443
ApeKI	GCWGC	2 cut(s)	241, 469
ApoI	RAATTY	3 cut(s)	15, 172, 300
AspS9I	GGNCC	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	34
BbsI	GAAGAC	2 cut(s)	21, 620
BbvI	GCAGC	2 cut(s)	228, 481
BccI	CCATC	2 cut(s)	191, 382
BciVI	GTATCC	1 cut(s)	157
BcnI	CCSGG	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	3 cut(s)	50, 530, 713
BfuAI	ACCTGC	1 cut(s)	671
BfuI	GTATCC	1 cut(s)	157
BisI	GCNGC	3 cut(s)	38, 242, 470
BlsI	GCNGC	3 cut(s)	39, 243, 471
Bme1390I	CCNGG	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	2 cut(s)	397, 573
BmrFI	CCNGG	1 cut(s)	34
BmsI	GCATC	2 cut(s)	196, 608
BpiI	GAAGAC	2 cut(s)	21, 620
BplI	GAGNNNNNCTC	2 cut(s)	700, 732
Bpu10I	CCTNAGC	1 cut(s)	707
BpuMI	CCSGG	1 cut(s)	34
BsaI	GGTCTC	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	2 cut(s)	522, 673
Bse3DI	GCAATG	1 cut(s)	134
BseGI	GGATG	4 cut(s)	211, 425, 592, 661
BseLI	CCNNNNNNNGG	2 cut(s)	522, 673
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	3 cut(s)	69, 579, 698
BseRI	GAGGAG	2 cut(s)	509, 584
BseXI	GCAGC	2 cut(s)	228, 481
BsgI	GTGCAG	1 cut(s)	488
BshFI	GGCC	2 cut(s)	37, 445
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	2 cut(s)	522, 673
BsmAI	GTCTC	1 cut(s)	145
BsmI	GAATGC	2 cut(s)	499, 592
BsnI	GGCC	2 cut(s)	37, 445
Bso31I	GGTCTC	1 cut(s)	145
Bsp143I	GATC	3 cut(s)	69, 93, 142
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	2 cut(s)	37, 445
BspCNI	CTCAG	3 cut(s)	70, 578, 699
BspHI	TCATGA	4 cut(s)	10, 307, 456, 579
BspLI	GGNNCC	2 cut(s)	397, 573
BspMI	ACCTGC	1 cut(s)	671
BspPI	GGATC	1 cut(s)	64
BspTNI	GGTCTC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	134
BssMI	GATC	3 cut(s)	69, 93, 142
Bst4CI	ACNGT	4 cut(s)	265, 355, 400, 619
BstC8I	GCNNGC	2 cut(s)	629, 732
BstDEI	CTNAG	3 cut(s)	78, 565, 707
BstF5I	GGATG	4 cut(s)	211, 425, 592, 661
BstKTI	GATC	3 cut(s)	72, 96, 145
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	3 cut(s)	69, 93, 142
BstNSI	RCATGY	2 cut(s)	337, 631
BstSCI	CCNGG	1 cut(s)	32
BstV1I	GCAGC	2 cut(s)	228, 481
BstV2I	GAAGAC	2 cut(s)	21, 620
BsuI	GTATCC	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	37, 445
BtsCI	GGATG	4 cut(s)	211, 425, 592, 661
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	2 cut(s)	183, 471
BveI	ACCTGC	1 cut(s)	671
Cac8I	GCNNGC	2 cut(s)	629, 732
CciI	TCATGA	4 cut(s)	10, 307, 456, 579
Cfr13I	GGNCC	1 cut(s)	35
Csp6I	GTAC	2 cut(s)	279, 537
CviQI	GTAC	2 cut(s)	279, 537
DdeI	CTNAG	3 cut(s)	78, 565, 707
DpnI	GATC	3 cut(s)	71, 95, 144
DpnII	GATC	3 cut(s)	69, 93, 142
Eco147I	AGGCCT	1 cut(s)	445
Eco31I	GGTCTC	1 cut(s)	145
EcoRI	GAATTC	1 cut(s)	172
Fnu4HI	GCNGC	3 cut(s)	38, 242, 470
FokI	GGATG	4 cut(s)	218, 412, 599, 668
Fsp4HI	GCNGC	3 cut(s)	38, 242, 470
FspBI	CTAG	3 cut(s)	50, 530, 713
GluI	GCNGC	3 cut(s)	38, 242, 470
HaeIII	GGCC	2 cut(s)	37, 445
HapII	CCGG	1 cut(s)	33
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	3 cut(s)	251, 316, 422
HpaII	CCGG	1 cut(s)	33
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	3 cut(s)	79, 417, 568
Hpy188III	TCNNGA	8 cut(s)	11, 91, 100, 146, 308, 457, 530, 580
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	4 cut(s)	84, 435, 484, 577
HpyCH4III	ACNGT	4 cut(s)	265, 355, 400, 619
HpyCH4V	TGCA	4 cut(s)	244, 469, 599, 631
HpyF3I	CTNAG	3 cut(s)	78, 565, 707
Kzo9I	GATC	3 cut(s)	69, 93, 142
LmnI	GCTCC	2 cut(s)	496, 571
Lsp1109I	GCAGC	2 cut(s)	228, 481
LweI	GCATC	2 cut(s)	196, 608
MaeI	CTAG	3 cut(s)	50, 530, 713
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	3 cut(s)	71, 95, 144
MboI	GATC	3 cut(s)	69, 93, 142
MboII	GAAGA	4 cut(s)	21, 88, 495, 625
MfeI	CAATTG	1 cut(s)	548
MluCI	AATT	4 cut(s)	15, 172, 300, 548
MmeI	TCCRAC	3 cut(s)	87, 373, 621
MnlI	CCTC	7 cut(s)	32, 75, 177, 487, 516, 562, 646
MseI	TTAA	4 cut(s)	486, 543, 561, 669
MslI	CAYNNNNRTG	2 cut(s)	632, 691
MspA1I	CMGCKG	1 cut(s)	241
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	34
MunI	CAATTG	1 cut(s)	548
Mva1269I	GAATGC	2 cut(s)	499, 592
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	3 cut(s)	69, 93, 142
NlaIV	GGNNCC	2 cut(s)	397, 573
NmuCI	GTSAC	1 cut(s)	265
NspI	RCATGY	2 cut(s)	337, 631
PaeI	GCATGC	1 cut(s)	631
PagI	TCATGA	4 cut(s)	10, 307, 456, 579
PceI	AGGCCT	1 cut(s)	445
PciI	ACATGT	1 cut(s)	333
PctI	GAATGC	2 cut(s)	499, 592
PfeI	GAWTC	3 cut(s)	251, 316, 422
PkrI	GCNGC	3 cut(s)	39, 243, 471
PscI	ACATGT	1 cut(s)	333
PspN4I	GGNNCC	2 cut(s)	397, 573
PspPI	GGNCC	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	241
RsaI	GTAC	2 cut(s)	280, 538
RsaNI	GTAC	2 cut(s)	279, 537
RseI	CAYNNNNRTG	2 cut(s)	632, 691
SaqAI	TTAA	4 cut(s)	486, 543, 561, 669
SatI	GCNGC	3 cut(s)	38, 242, 470
Sau3AI	GATC	3 cut(s)	69, 93, 142
Sau96I	GGNCC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	34
SetI	ASST	6 cut(s)	157, 243, 331, 513, 665, 718
SfaNI	GCATC	2 cut(s)	196, 608
SmiMI	CAYNNNNRTG	2 cut(s)	632, 691
SphI	GCATGC	1 cut(s)	631
Sse9I	AATT	4 cut(s)	15, 172, 300, 548
SseBI	AGGCCT	1 cut(s)	445
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	3 cut(s)	50, 530, 713
StuI	AGGCCT	1 cut(s)	445
StyD4I	CCNGG	1 cut(s)	32
TaaI	ACNGT	4 cut(s)	265, 355, 400, 619
TaqI	TCGA	1 cut(s)	325
TasI	AATT	4 cut(s)	15, 172, 300, 548
TatI	WGTACW	2 cut(s)	278, 536
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	3 cut(s)	251, 316, 422
Tru1I	TTAA	4 cut(s)	486, 543, 561, 669
Tru9I	TTAA	4 cut(s)	486, 543, 561, 669
TscAI	CASTG	2 cut(s)	183, 471
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	2 cut(s)	241, 469
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	8 cut(s)	27, 296, 414, 473, 495, 596, 626, 672
TspGWI	ACGGA	1 cut(s)	689
TspRI	CASTG	2 cut(s)	183, 471
XapI	RAATTY	3 cut(s)	15, 172, 300
XbaI	TCTAGA	1 cut(s)	529
XceI	RCATGY	2 cut(s)	337, 631
XspI	CTAG	3 cut(s)	50, 530, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.