Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001632

Physical Location & Seq

Genomic Coordinates Reverse (-)

46504244 .. 46508000

Gene Structure 3757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG186700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGACAAATCCTGTGATACATGTGCTGAATTTACTGATCGAGGCATTGCTTTTAAAGAAGTGATTATCACATGCTCTAAATGCAGAATAGCTCTTATTGCATGCGGGTTAATCCCTCCTTGGTTGAGGACTGGGATTCGGACAATTGGACCCGTCTCAGAAGACTTTCCTGTTGGGTACAAAACTATTACTCCAAAGTCTCCTGTTTCCGGGGTTAAAGAAAATCAAAATTTGAAACATTCACAAGATGCTGAAACTTGTAAGAAGAAGGAGACTGCTTCAAAAAAAAAAAGGGCTCCTGGAACACCCACAAAAGGGCATATTATAAAAGAACAACCAATTGATGCATCACTACTTTCTGAGGGAGTTGAAACTTCTAGTAGGATGACAGTAGAGGAACAGACCAAATTCTCATGCACACCATCAACATCAAGGCATTCACCATTTAATAATAGTTATGGACCTTATGTTGTGAATCCAGTTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

17.66

Weight (kDa)

8.97

Isoelectric Point (pI)

48.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61090 AT5G61090 AT5G61120 AT5G61120 AT5G61120
fragaria_vesca	FvH4_4g13540 FvH4_4g13550 FvH4_5g13930 FvH4_5g13940 FvH4_5g13940 FvH4_5g13940
malus_domestica	MD06G1202200.v1.1 MD14G1211300.v1.1
prunus_persica	Prupe.5G204200_v2.0.a1 Prupe.5G204200_v2.0.a1 Prupe.5G204400_v2.0.a1
pyrus_communis	pycom06g17820
rosa_chinensis	RchiOBHm_Chr4g0414551 RchiOBHm_Chr4g0414561 RchiOBHm_Chr4g0414571 RchiOBHm_Chr7g0183021
rosa_laevigata	RLG00000005087
rosa_multiflora	Rmu_co8299331.1_g000001 Rmu_sc0000808.1_g000022 Rmu_sc0001063.1_g000013 Rmu_sc0005196.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240320 Rroxscaffold_3G00240450 Rroxscaffold_3G00270840
rosa_rugosa	Rorug06G0451800
rosa_samantha	Rh4AG186600 Rh4AG186700 Rh4BG173800 Rh4BG184200 Rh4CG197200 Rh4CG197500 Rh4DG181800 Rh4DG181900 Rh4DG183300 Rh7AG055300 Rh7AG324400 Rh7BG054700 Rh7BG309400 Rh7CG056000 Rh7CG341300 Rh7DG054800
rosa_wichuraiana	Rw4G015750 Rw7G027480 Rw7G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	326
AciI	CCGC	1 cut(s)	105
AcsI	RAATTY	3 cut(s)	29, 229, 407
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	3 cut(s)	209, 314, 315
AflIII	ACRYGT	1 cut(s)	20
AgsI	TTSAA	3 cut(s)	235, 282, 371
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
Alw26I	GTCTC	3 cut(s)	160, 204, 266
ApoI	RAATTY	3 cut(s)	29, 229, 407
Asp700I	GAANNNNTTC	1 cut(s)	165
AspS9I	GGNCC	2 cut(s)	149, 461
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	432
AvaII	GGWCC	2 cut(s)	149, 461
BanII	GRGCYC	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	168
BccI	CCATC	1 cut(s)	430
BciT130I	CCWGG	1 cut(s)	300
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	3 cut(s)	160, 204, 266
BfaI	CTAG	1 cut(s)	378
Bme1390I	CCNGG	2 cut(s)	211, 300
Bme18I	GGWCC	2 cut(s)	149, 461
BmgT120I	GGNCC	2 cut(s)	149, 461
BmiI	GGNNCC	2 cut(s)	151, 297
BmrFI	CCNGG	2 cut(s)	211, 300
BmrI	ACTGGG	1 cut(s)	141
BmsI	GCATC	3 cut(s)	238, 334, 356
BmuI	ACTGGG	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	168
BpuMI	CCSGG	1 cut(s)	211
BsaJI	CCNNGG	2 cut(s)	119, 210
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 314, 315
Bse1I	ACTGG	2 cut(s)	136, 479
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	2 cut(s)	119, 210
BseGI	GGATG	1 cut(s)	390
BseLI	CCNNNNNNNGG	3 cut(s)	209, 314, 315
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	2 cut(s)	171, 351
BseNI	ACTGG	2 cut(s)	136, 479
BsiSI	CCGG	1 cut(s)	210
BslI	CCNNNNNNNGG	3 cut(s)	209, 314, 315
BsmAI	GTCTC	3 cut(s)	160, 204, 266
BsmBI	CGTCTC	1 cut(s)	160
BsmI	GAATGC	1 cut(s)	436
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	1 cut(s)	37
BspACI	CCGC	1 cut(s)	105
BspCNI	CTCAG	2 cut(s)	170, 352
BspLI	GGNNCC	2 cut(s)	151, 297
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	136, 479
BssECI	CCNNGG	2 cut(s)	119, 210
BssMI	GATC	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	2 cut(s)	157, 360
BstF5I	GGATG	1 cut(s)	390
BstKTI	GATC	1 cut(s)	40
BstMAI	GTCTC	3 cut(s)	160, 204, 266
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 98
BstNI	CCWGG	1 cut(s)	300
BstNSI	RCATGY	3 cut(s)	24, 75, 105
BstSCI	CCNGG	2 cut(s)	209, 298
BstV2I	GAAGAC	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	390
Cac8I	GCNNGC	1 cut(s)	103
Cfr13I	GGNCC	2 cut(s)	149, 461
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	4 cut(s)	21, 72, 102, 414
CviJI	RGCY	2 cut(s)	92, 296
CviKI_1	RGCY	2 cut(s)	92, 296
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	2 cut(s)	157, 360
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
DraI	TTTAAA	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	298
Eco47I	GGWCC	2 cut(s)	149, 461
EcoRII	CCWGG	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	119
EcoT22I	ATGCAT	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	119
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	4 cut(s)	24, 75, 105, 417
FaiI	YATR	8 cut(s)	22, 73, 103, 321, 326, 415, 459, 468
FatI	CATG	4 cut(s)	20, 71, 101, 413
FauI	CCCGC	1 cut(s)	98
FokI	GGATG	1 cut(s)	397
FriOI	GRGCYC	1 cut(s)	298
FspBI	CTAG	1 cut(s)	378
HapII	CCGG	1 cut(s)	210
Hin1II	CATG	4 cut(s)	24, 75, 105, 417
HinfI	GANTC	2 cut(s)	136, 475
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	1 cut(s)	432
Hpy188I	TCNGA	3 cut(s)	141, 160, 361
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4V	TGCA	4 cut(s)	84, 101, 347, 417
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 98
HpyF3I	CTNAG	2 cut(s)	157, 360
Hsp92II	CATG	4 cut(s)	24, 75, 105, 417
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	7 cut(s)	25, 117, 183, 216, 223, 285, 312
LweI	GCATC	3 cut(s)	238, 334, 356
MaeI	CTAG	1 cut(s)	378
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	2 cut(s)	173, 277
MfeI	CAATTG	2 cut(s)	144, 339
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	5 cut(s)	29, 144, 229, 339, 407
MnlI	CCTC	5 cut(s)	35, 120, 126, 355, 388
Mph1103I	ATGCAT	1 cut(s)	349
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	4 cut(s)	54, 110, 216, 447
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	2 cut(s)	211, 300
MunI	CAATTG	2 cut(s)	144, 339
Mva1269I	GAATGC	1 cut(s)	436
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	81, 98
NciI	CCSGG	1 cut(s)	211
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	4 cut(s)	24, 75, 105, 417
NlaIV	GGNNCC	2 cut(s)	151, 297
NsiI	ATGCAT	1 cut(s)	349
NspI	RCATGY	3 cut(s)	24, 75, 105
PaeI	GCATGC	1 cut(s)	105
PciI	ACATGT	1 cut(s)	20
PctI	GAATGC	1 cut(s)	436
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	136, 475
PfoI	TCCNGGA	1 cut(s)	298
PscI	ACATGT	1 cut(s)	20
PsiI	TTATAA	1 cut(s)	326
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	2 cut(s)	151, 297
PspPI	GGNCC	2 cut(s)	149, 461
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SaqAI	TTAA	4 cut(s)	54, 110, 216, 447
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	2 cut(s)	149, 461
ScrFI	CCNGG	2 cut(s)	211, 300
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	2 cut(s)	94, 466
SfaNI	GCATC	3 cut(s)	238, 334, 356
SinI	GGWCC	2 cut(s)	149, 461
SphI	GCATGC	1 cut(s)	105
Sse9I	AATT	5 cut(s)	29, 144, 229, 339, 407
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	2 cut(s)	209, 298
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	391
TaqI	TCGA	1 cut(s)	40
TasI	AATT	5 cut(s)	29, 144, 229, 339, 407
TfiI	GAWTC	2 cut(s)	136, 475
Tru1I	TTAA	4 cut(s)	54, 110, 216, 447
Tru9I	TTAA	4 cut(s)	54, 110, 216, 447
VpaK11BI	GGWCC	2 cut(s)	149, 461
XapI	RAATTY	3 cut(s)	29, 229, 407
XceI	RCATGY	3 cut(s)	24, 75, 105
XmnI	GAANNNNTTC	1 cut(s)	165
XspI	CTAG	1 cut(s)	378
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.