Rh4DG181800

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001632
Physical Location & Seq
Reverse (-)
36167582 .. 36168484
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG181800.1

Sequence Viewer

Length: 327 bp
ATGCCTCCGGTCTTACGGGCCAATTTGCTTCTTAGATTGCTTCTTTGGGCTGATCCCTTCCGAGGGGAATGTCCTGATCTTCAAGATGTTGGACTTTACTTTTTCCCTGATGATAACATTGCCAGATCAAGAGAGACCAATGCTTTGCTGTTGGAGGTCATGGATACCCAAAATTCAGTGATGAGGATTTACTTTGATGGAGTGGATGCTGTGGATTTGTTGATATTTACATCTAAACAGCTGCATTTAGACTTGCTGAATACTGTTATAAGTCCAAGTATAGAAAATTTCTTATGGGGAATTTTTCGTGACAAGAATCATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

108

Amino Acids

12.47

Weight (kDa)

4.61

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 1 - 102 6.2e-20 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 269
AclWI GGATC 1 cut(s) 47
AcsI RAATTY 3 cut(s) 172, 286, 300
AfiI CCNNNNNNNGG 2 cut(s) 62, 63
AgsI TTSAA 1 cut(s) 83
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 1 cut(s) 47
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 241
ApoI RAATTY 3 cut(s) 172, 286, 300
ArsI GACNNNNNNTTYG 2 cut(s) 127, 159
AspS9I GGNCC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 228
BccI CCATC 1 cut(s) 191
BciVI GTATCC 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 128
BfuI GTATCC 1 cut(s) 157
BisI GCNGC 1 cut(s) 242
BlsI GCNGC 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 18
BmsI GCATC 1 cut(s) 196
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 61
BsaWI WCCGGW 1 cut(s) 7
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 63
Bse3DI GCAATG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 61
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 2 cut(s) 62, 63
BseMI GCAATG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 228
BshFI GGCC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 8
BslI CCNNNNNNNGG 2 cut(s) 62, 63
BsmAI GTCTC 1 cut(s) 128
BsnI GGCC 1 cut(s) 20
Bso31I GGTCTC 1 cut(s) 128
Bsp143I GATC 3 cut(s) 52, 76, 125
BspANI GGCC 1 cut(s) 20
BspPI GGATC 1 cut(s) 47
BspTNI GGTCTC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 3 cut(s) 52, 76, 125
Bst4CI ACNGT 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 3 cut(s) 55, 79, 128
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 3 cut(s) 52, 76, 125
BstV1I GCAGC 1 cut(s) 228
BsuI GTATCC 1 cut(s) 157
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 18
CviAII CATG 1 cut(s) 160
CviJI RGCY 3 cut(s) 20, 50, 241
CviKI_1 RGCY 3 cut(s) 20, 50, 241
DdeI CTNAG 1 cut(s) 32
DpnI GATC 3 cut(s) 54, 78, 127
DpnII GATC 3 cut(s) 52, 76, 125
Eco31I GGTCTC 1 cut(s) 128
FaeI CATG 1 cut(s) 163
FaiI YATR 4 cut(s) 161, 269, 281, 295
FatI CATG 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 242
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 1 cut(s) 242
GluI GCNGC 1 cut(s) 242
HaeIII GGCC 1 cut(s) 20
HapII CCGG 1 cut(s) 8
Hin1II CATG 1 cut(s) 163
HinfI GANTC 1 cut(s) 316
HpaII CCGG 1 cut(s) 8
Hpy188I TCNGA 1 cut(s) 62
Hpy188III TCNNGA 4 cut(s) 74, 83, 129, 308
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 1 cut(s) 244
HpyF3I CTNAG 1 cut(s) 32
Hsp92II CATG 1 cut(s) 163
Kzo9I GATC 3 cut(s) 52, 76, 125
LpnPI CCDG 4 cut(s) 21, 87, 120, 136
Lsp1109I GCAGC 1 cut(s) 228
LweI GCATC 1 cut(s) 196
MaeIII GTNAC 1 cut(s) 308
MalI GATC 3 cut(s) 54, 78, 127
MboI GATC 3 cut(s) 52, 76, 125
MboII GAAGA 1 cut(s) 71
MluCI AATT 4 cut(s) 22, 172, 286, 300
MmeI TCCRAC 2 cut(s) 70, 132
MnlI CCTC 4 cut(s) 15, 56, 148, 177
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 1 cut(s) 8
NdeII GATC 3 cut(s) 52, 76, 125
NlaIII CATG 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 316
PkrI GCNGC 1 cut(s) 243
PsiI TTATAA 1 cut(s) 269
PspPI GGNCC 1 cut(s) 18
PvuII CAGCTG 1 cut(s) 241
SatI GCNGC 1 cut(s) 242
Sau3AI GATC 3 cut(s) 52, 76, 125
Sau96I GGNCC 1 cut(s) 18
SetI ASST 2 cut(s) 159, 243
SfaNI GCATC 1 cut(s) 196
Sse9I AATT 4 cut(s) 22, 172, 286, 300
TaaI ACNGT 1 cut(s) 265
TasI AATT 4 cut(s) 22, 172, 286, 300
TfiI GAWTC 1 cut(s) 316
TscAI CASTG 1 cut(s) 183
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 1 cut(s) 241
Tsp45I GTSAC 1 cut(s) 308
TspRI CASTG 1 cut(s) 183
XapI RAATTY 3 cut(s) 172, 286, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.