Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001632

Physical Location & Seq

Genomic Coordinates Reverse (-)

36310818 .. 36311978

Gene Structure 1161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG183300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAACATATTTATATATTGCATGCGCGTTAATCCCTCCTTGGTCGAGGACTGGGATCCGGACAGTTGGGTATGCGAATCATGTGAACAGGGCAATGGGATTCTTTTTCCAAACTCTAGTATTAAGGAAGACACATTTGAGTCATCAACCAGTAGAGGCCACTATGATGGCATGCATTCAGCAGGTCCCAGCAGAAATTGTAATGGTTCAGGGTGGCAAGCTTACTCTAAGAGGCAAAAGTCTATTGTGAATGAAAAAGTTAAGTTCATTACAAATGAAGAAGTCAGGAGGCTATCTTTGGCAGACCCGTCTCAGAAGACTCCTGTTGGGTACAAAACTGTTACTCGAAAGTCTCCTGTTTCCTGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

123

Amino Acids

13.91

Weight (kDa)

7.66

Isoelectric Point (pI)

60.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61090 AT5G61090 AT5G61120 AT5G61120 AT5G61120
fragaria_vesca	FvH4_4g13540 FvH4_4g13550 FvH4_5g13930 FvH4_5g13940 FvH4_5g13940 FvH4_5g13940
malus_domestica	MD06G1202200.v1.1 MD14G1211300.v1.1
prunus_persica	Prupe.5G204200_v2.0.a1 Prupe.5G204200_v2.0.a1 Prupe.5G204400_v2.0.a1
pyrus_communis	pycom06g17820
rosa_chinensis	RchiOBHm_Chr4g0414551 RchiOBHm_Chr4g0414561 RchiOBHm_Chr4g0414571 RchiOBHm_Chr7g0183021
rosa_laevigata	RLG00000005087
rosa_multiflora	Rmu_co8299331.1_g000001 Rmu_sc0000808.1_g000022 Rmu_sc0001063.1_g000013 Rmu_sc0005196.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240320 Rroxscaffold_3G00240450 Rroxscaffold_3G00270840
rosa_rugosa	Rorug06G0451800
rosa_samantha	Rh4AG186600 Rh4AG186700 Rh4BG173800 Rh4BG184200 Rh4CG197200 Rh4CG197500 Rh4DG181800 Rh4DG181900 Rh4DG183300 Rh7AG055300 Rh7AG324400 Rh7BG054700 Rh7BG309400 Rh7CG056000 Rh7CG341300 Rh7DG054800
rosa_wichuraiana	Rw4G015750 Rw7G027480 Rw7G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	173
AccII	CGCG	1 cut(s)	27
AccIII	TCCGGA	1 cut(s)	58
AclWI	GGATC	2 cut(s)	50, 63
AfaI	GTAC	1 cut(s)	332
AjnI	CCWGG	1 cut(s)	362
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
Alw26I	GTCTC	2 cut(s)	315, 357
AlwI	GGATC	2 cut(s)	50, 63
Aor13HI	TCCGGA	1 cut(s)	58
AoxI	GGCC	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	185
BamHI	GGATCC	1 cut(s)	55
BbsI	GAAGAC	2 cut(s)	135, 323
BccI	CCATC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	364
BcoDI	GTCTC	2 cut(s)	315, 357
BfaI	CTAG	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	173
Bme1390I	CCNGG	1 cut(s)	364
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	2 cut(s)	57, 187
BmrFI	CCNGG	1 cut(s)	364
BmrI	ACTGGG	1 cut(s)	61
BmuI	ACTGGG	1 cut(s)	61
BpiI	GAAGAC	2 cut(s)	135, 323
BsaJI	CCNNGG	2 cut(s)	39, 363
BsaWI	WCCGGW	1 cut(s)	58
Bse1I	ACTGG	2 cut(s)	56, 150
Bse3DI	GCAATG	1 cut(s)	100
BseAI	TCCGGA	1 cut(s)	58
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	2 cut(s)	39, 363
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	2 cut(s)	56, 150
BseYI	CCCAGC	1 cut(s)	188
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	171
BsmAI	GTCTC	2 cut(s)	315, 357
BsmBI	CGTCTC	1 cut(s)	315
BsmFI	GGGAC	1 cut(s)	171
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	159
Bsp13I	TCCGGA	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	55
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	1 cut(s)	325
BspEI	TCCGGA	1 cut(s)	58
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	57, 187
BspMI	ACCTGC	1 cut(s)	173
BspPI	GGATC	2 cut(s)	50, 63
BsrDI	GCAATG	1 cut(s)	100
BsrI	ACTGG	2 cut(s)	56, 150
BssECI	CCNNGG	2 cut(s)	39, 363
BssMI	GATC	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	2 cut(s)	65, 340
BstC8I	GCNNGC	3 cut(s)	23, 173, 219
BstDEI	CTNAG	2 cut(s)	228, 312
BstFNI	CGCG	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	2 cut(s)	315, 357
BstMBI	GATC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	364
BstNSI	RCATGY	2 cut(s)	25, 175
BstSCI	CCNGG	1 cut(s)	362
BstUI	CGCG	1 cut(s)	27
BstV2I	GAAGAC	2 cut(s)	135, 323
BstX2I	RGATCY	1 cut(s)	55
BstXI	CCANNNNNNTGG	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	159
BveI	ACCTGC	1 cut(s)	173
Cac8I	GCNNGC	3 cut(s)	23, 173, 219
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	3 cut(s)	22, 81, 172
CviJI	RGCY	3 cut(s)	159, 221, 292
CviKI_1	RGCY	3 cut(s)	159, 221, 292
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	2 cut(s)	228, 312
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	362
EcoT14I	CCWWGG	1 cut(s)	39
EcoT22I	ATGCAT	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	315
FaeI	CATG	3 cut(s)	25, 84, 175
FaiI	YATR	8 cut(s)	8, 14, 16, 23, 73, 82, 165, 173
FaqI	GGGAC	1 cut(s)	171
FatI	CATG	3 cut(s)	21, 80, 171
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	26
GsaI	CCCAGC	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	1 cut(s)	59
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	25, 84, 175
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	4 cut(s)	77, 100, 140, 319
HpaII	CCGG	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	2 cut(s)	59, 286
Hpy8I	GTNNAC	1 cut(s)	86
HpyCH4III	ACNGT	2 cut(s)	65, 340
HpyCH4V	TGCA	2 cut(s)	21, 175
HpyF3I	CTNAG	2 cut(s)	228, 312
Hsp92II	CATG	3 cut(s)	25, 84, 175
HspAI	GCGC	1 cut(s)	25
Kpn2I	TCCGGA	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	55
MaeI	CTAG	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	3 cut(s)	140, 290, 328
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	1 cut(s)	196
MlyI	GAGTC	2 cut(s)	149, 313
MnlI	CCTC	5 cut(s)	40, 46, 149, 225, 282
Mph1103I	ATGCAT	1 cut(s)	177
MroI	TCCGGA	1 cut(s)	58
MseI	TTAA	3 cut(s)	30, 123, 261
MslI	CAYNNNNRTG	1 cut(s)	165
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	364
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	364
MvnI	CGCG	1 cut(s)	27
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	3 cut(s)	25, 84, 175
NlaIV	GGNNCC	2 cut(s)	57, 187
NsiI	ATGCAT	1 cut(s)	177
NspI	RCATGY	2 cut(s)	25, 175
PaeI	GCATGC	2 cut(s)	25, 175
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	77, 100
PleI	GAGTC	2 cut(s)	148, 313
PpsI	GAGTC	2 cut(s)	148, 313
PpuMI	RGGWCCY	1 cut(s)	185
Psp5II	RGGWCCY	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	362
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	2 cut(s)	57, 187
PspPI	GGNCC	1 cut(s)	185
PspPPI	RGGWCCY	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	3 cut(s)	30, 123, 261
Sau3AI	GATC	1 cut(s)	55
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	2 cut(s)	149, 313
ScrFI	CCNGG	1 cut(s)	364
SetI	ASST	2 cut(s)	187, 223
SinI	GGWCC	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	165
SphI	GCATGC	2 cut(s)	25, 175
Sse9I	AATT	1 cut(s)	196
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	362
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	2 cut(s)	65, 340
TaqI	TCGA	2 cut(s)	45, 346
TasI	AATT	1 cut(s)	196
TfiI	GAWTC	2 cut(s)	77, 100
Tru1I	TTAA	3 cut(s)	30, 123, 261
Tru9I	TTAA	3 cut(s)	30, 123, 261
TspDTI	ATGAA	4 cut(s)	17, 256, 267, 291
VpaK11BI	GGWCC	1 cut(s)	185
XceI	RCATGY	2 cut(s)	25, 175
XspI	CTAG	1 cut(s)	117
Zsp2I	ATGCAT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.