Rh7BG054700

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001632
Physical Location & Seq
Forward (+)
3671274 .. 3677278
6005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG054700.1

Sequence Viewer

Length: 1731 bp
ATGCGGGCTAAAATTTCCTATTGTAATTGGGATAAATGGGTTTGCGAATCATGCACTAAGGAAGAAGGGACGCTTTGTTCGAAATCTAGTATTAAGGGAGATCCAGTACCATTGTCAACTGATATAGCCCACTATGATGGCAGACATTTCGCAAGCCCCAGCAAAAATTCAGGGTGGCAAGCTCACTCTAGCAGGCAAAAGGCTGTCAAGAGTGGAAAAGTAAGGTACATTACACATGAAGAAGTCCAACAGCTAGCTAATACAAAATCAACATCACCCCAAAAGACTTCTATTGTGGTCAAAACCGTTGCACCAAAGTCCCCCTTATCCAGGGTTAACGCACCTCCAGATGTGACGCGGCCTAAACATAGCAGACCCCCTAACAGGCAAAGCATCTCCATTTCAGAAAGGGGCAGCCCCTTCTCCATTTCACAAACTGTGACGCGTCCTAGACGTGGCAGGCCCCCTAACAGGCAAAGCATCTCCATTTCAGAAAAGGGCAGCCCCTTCTCCAGTTCACAAACCGTGATGCATCCTAGACGTGGCAGGCCCCGCAAGATGCTTAGCATCTCCAAGATTAATCAGCAAGCATCTCAAATTATAAAACATTCACAAGAAAATTGGTCTCCTGGAACACATACAAAAGGGCACGTTATCGAGGAAAAACCAACGGATGGATCAGTACTTTCTCGGGGAGCTGAAACTTCTAGTAGGAAGATAGCGAAGGAACCGAACACACTATCATGCACACCATCACCATCAAGGCATTCATCACTAAATATGAGTTCAGGTGGTGAGACATCTGCTGCTGAACATAATCATACAGATGGTGAAGAAAGAAACCTCCTCAACATATTCTCTAGTCTCCATTTATATCGCGCGTCTCTTCCTGCTCTGCATGCTACTTGGAAGGGAGGCTTCTTCATCTTTGATGCAGACACACCTGCTCAATTCATTGGTGGGTTCCAGGCACAACTTCCCTGTAAGGTTCGTCGTAGAGCCTATGACTTATCACAAAAAATGCCTGCTGTTCTTCGAGCTACTTTGCTTCCTCGATTGCATCTTTGGGATGATCCGTTCCAAAATGAATGTCCTGAACTTAAAGATGTTGCACTGTACTTCTTCCCTGATGATAACATTGCCAGCTCAAGAGAGACTTATGCTTCGCTGTTTGAGGTCATGGATACCAAAAGTTCAGTCTTGAGAATTTACTTTGATGGAGTGGATGCTGCGGAGTTGCTTATATATACATCTAAACAGCTGCGTTTAGACTTGCTGGACACTGTTACATGTCCAAAGACACAAAATTTCTTATGGGGAATCTTTCGTTCTGGAAGTAATTGTCAAGCTGACCTAGATGACAGCGCAACTATTGCGGATATGGAAGTTGACATGGTTGGTGGAAAGATGGTGGGAAGTGTTGATGTAGTTGTTTCAAAAGATTCATCCACCCCTTGCAGAATGTCTGAGCAGCCTAGAATGACTGCTGTGCAACAACTTTTGTGTATTACAAAGCAGGAGCATTCTTCTTACCAAAACAGAATGAGGCTTCTAGATGCTGCTATTAAACAATTGTTAGGAGTTAAATCAGAAGAGCCTCAGGACTCTGATACTTCTGCATCATCAGCAATGGAGACCACAATTGCATTGCAGCAAGTGATGTTGGAGAAAGACAATGACGAAATGGTAGGGACTTCTTCAACTACCGATCATGCAGATAATCAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

576

Amino Acids

63.82

Weight (kDa)

8.81

Isoelectric Point (pI)

56.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 303 - 442 1.3e-34 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 602
AarI CACCTGC 1 cut(s) 952
Acc36I ACCTGC 1 cut(s) 952
AccB7I CCANNNNNTGG 1 cut(s) 674
AccII CGCG 4 cut(s) 358, 445, 879, 881
AciI CCGC 5 cut(s) 4, 358, 553, 1232, 1376
AclWI GGATC 3 cut(s) 95, 685, 1067
AcsI RAATTY 4 cut(s) 12, 166, 1206, 1306
AfaI GTAC 4 cut(s) 108, 227, 684, 1118
AfiI CCNNNNNNNGG 6 cut(s) 330, 384, 455, 471, 542, 674
AflIII ACRYGT 2 cut(s) 443, 1289
AgsI TTSAA 2 cut(s) 1437, 1701
AjiI CACGTC 2 cut(s) 455, 542
AjnI CCWGG 3 cut(s) 329, 628, 966
AloI GAACNNNNNNTCC 4 cut(s) 61, 93, 1061, 1093
AluBI AGCT 8 cut(s) 182, 253, 257, 698, 1040, 1146, 1261, 1349
AluI AGCT 8 cut(s) 182, 253, 257, 698, 1040, 1146, 1261, 1349
Alw26I GTCTC 6 cut(s) 630, 791, 869, 888, 1148, 1628
AlwI GGATC 3 cut(s) 95, 685, 1067
Ama87I CYCGRG 1 cut(s) 690
AoxI GGCC 3 cut(s) 359, 461, 548
ApeKI GCWGC 8 cut(s) 414, 501, 806, 1229, 1261, 1471, 1559, 1651
ApoI RAATTY 4 cut(s) 12, 166, 1206, 1306
ArsI GACNNNNNNTTYG 8 cut(s) 61, 93, 1075, 1107, 1147, 1179, 1182, 1214
AseI ATTAAT 1 cut(s) 579
AspLEI GCGC 2 cut(s) 881, 1367
AspS9I GGNCC 2 cut(s) 462, 549
AsuHPI GGTGA 4 cut(s) 267, 747, 806, 842
AsuII TTCGAA 1 cut(s) 80
AsuNHI GCTAGC 1 cut(s) 253
AvaI CYCGRG 1 cut(s) 690
AxyI CCTNAGG 1 cut(s) 1599
BaeGI GKGCMC 1 cut(s) 651
BbvI GCAGC 8 cut(s) 426, 513, 793, 1216, 1248, 1483, 1546, 1663
BccI CCATC 7 cut(s) 131, 668, 760, 766, 821, 1211, 1402
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BciT130I CCWGG 3 cut(s) 331, 630, 968
BciVI GTATCC 1 cut(s) 1177
BcoDI GTCTC 6 cut(s) 630, 791, 869, 888, 1148, 1628
BfuAI ACCTGC 1 cut(s) 952
BfuI GTATCC 1 cut(s) 1177
BisI GCNGC 9 cut(s) 359, 415, 502, 807, 1230, 1262, 1472, 1560, 1652
BlpI GCTNAGC 1 cut(s) 563
BlsI GCNGC 9 cut(s) 360, 416, 503, 808, 1231, 1263, 1473, 1561, 1653
BmcAI AGTACT 1 cut(s) 684
Bme1390I CCNGG 3 cut(s) 331, 630, 968
BmeT110I CYCGRG 1 cut(s) 690
BmgBI CACGTC 2 cut(s) 455, 542
BmgT120I GGNCC 2 cut(s) 462, 549
BmiI GGNNCC 4 cut(s) 464, 551, 729, 965
BmrFI CCNGG 3 cut(s) 331, 630, 968
BmtI GCTAGC 1 cut(s) 257
BpmI CTGGAG 2 cut(s) 330, 496
Bpu1102I GCTNAGC 1 cut(s) 563
Bpu14I TTCGAA 1 cut(s) 80
BpuEI CTTGAG 2 cut(s) 1132, 1222
BsaI GGTCTC 2 cut(s) 630, 1628
BsaJI CCNNGG 1 cut(s) 330
BsaXI ACNNNNNCTCC 2 cut(s) 90, 120
Bsc4I CCNNNNNNNGG 6 cut(s) 330, 384, 455, 471, 542, 674
Bse1I ACTGG 2 cut(s) 104, 513
Bse21I CCTNAGG 1 cut(s) 1599
Bse3DI GCAATG 3 cut(s) 1137, 1635, 1646
BseBI CCWGG 3 cut(s) 331, 630, 968
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 5 cut(s) 532, 679, 1075, 1231, 1445
BseLI CCNNNNNNNGG 6 cut(s) 330, 384, 455, 471, 542, 674
BseMI GCAATG 3 cut(s) 1137, 1635, 1646
BseMII CTCAG 2 cut(s) 1458, 1613
BseNI ACTGG 2 cut(s) 104, 513
BseRI GAGGAG 1 cut(s) 836
BseSI GKGCMC 1 cut(s) 651
BseXI GCAGC 8 cut(s) 426, 513, 793, 1216, 1248, 1483, 1546, 1663
BseYI CCCAGC 1 cut(s) 158
Bsh1236I CGCG 4 cut(s) 358, 445, 879, 881
BshFI GGCC 3 cut(s) 361, 463, 550
BsiHKCI CYCGRG 1 cut(s) 690
BslFI GGGAC 3 cut(s) 82, 304, 1705
BslI CCNNNNNNNGG 6 cut(s) 330, 384, 455, 471, 542, 674
BsmAI GTCTC 6 cut(s) 630, 791, 869, 888, 1148, 1628
BsmBI CGTCTC 1 cut(s) 888
BsmFI GGGAC 3 cut(s) 82, 304, 1705
BsmI GAATGC 2 cut(s) 766, 1522
BsnI GGCC 3 cut(s) 361, 463, 550
Bso31I GGTCTC 2 cut(s) 630, 1628
BsoBI CYCGRG 1 cut(s) 690
Bsp119I TTCGAA 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 651
Bsp143I GATC 4 cut(s) 100, 677, 1072, 1708
Bsp1720I GCTNAGC 1 cut(s) 563
BspACI CCGC 5 cut(s) 4, 358, 553, 1232, 1376
BspANI GGCC 3 cut(s) 361, 463, 550
BspCNI CTCAG 2 cut(s) 1459, 1612
BspFNI CGCG 4 cut(s) 358, 445, 879, 881
BspLI GGNNCC 4 cut(s) 464, 551, 729, 965
BspMI ACCTGC 1 cut(s) 952
BspOI GCTAGC 1 cut(s) 257
BspPI GGATC 3 cut(s) 95, 685, 1067
BspQI GCTCTTC 1 cut(s) 1587
BspT104I TTCGAA 1 cut(s) 80
BspTNI GGTCTC 2 cut(s) 630, 1628
BsrDI GCAATG 3 cut(s) 1137, 1635, 1646
BsrI ACTGG 2 cut(s) 104, 513
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 4 cut(s) 100, 677, 1072, 1708
Bst2UI CCWGG 3 cut(s) 331, 630, 968
Bst4CI ACNGT 5 cut(s) 307, 439, 526, 1116, 1285
Bst6I CTCTTC 2 cut(s) 891, 1587
BstAPI GCANNNNNTGC 1 cut(s) 1373
BstBI TTCGAA 1 cut(s) 80
BstDEI CTNAG 4 cut(s) 57, 563, 1467, 1599
BstENI CCTNNNNNAGG 1 cut(s) 328
BstF5I GGATG 5 cut(s) 532, 679, 1075, 1231, 1445
BstFNI CGCG 4 cut(s) 358, 445, 879, 881
BstHHI GCGC 2 cut(s) 881, 1367
BstKTI GATC 4 cut(s) 103, 680, 1075, 1711
BstMAI GTCTC 6 cut(s) 630, 791, 869, 888, 1148, 1628
BstMBI GATC 4 cut(s) 100, 677, 1072, 1708
BstMWI GCNNNNNNNGC 5 cut(s) 51, 552, 899, 1373, 1625
BstNI CCWGG 3 cut(s) 331, 630, 968
BstNSI RCATGY 2 cut(s) 902, 1293
BstSCI CCNGG 3 cut(s) 329, 628, 966
BstSLI GKGCMC 1 cut(s) 651
BstUI CGCG 4 cut(s) 358, 445, 879, 881
BstV1I GCAGC 8 cut(s) 426, 513, 793, 1216, 1248, 1483, 1546, 1663
BstX2I RGATCY 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 137
BstYI RGATCY 1 cut(s) 100
Bsu36I CCTNAGG 1 cut(s) 1599
BsuI GTATCC 1 cut(s) 1177
BsuRI GGCC 3 cut(s) 361, 463, 550
BtrI CACGTC 2 cut(s) 455, 542
BtsCI GGATG 5 cut(s) 532, 679, 1075, 1231, 1445
BtsIMutI CAGTG 2 cut(s) 1112, 1281
BveI ACCTGC 1 cut(s) 952
CfoI GCGC 2 cut(s) 881, 1367
Cfr13I GGNCC 2 cut(s) 462, 549
CseI GACGC 5 cut(s) 79, 364, 434, 451, 870
Csp6I GTAC 4 cut(s) 107, 226, 683, 1117
CviAII CATG 8 cut(s) 51, 236, 744, 899, 1180, 1290, 1393, 1712
CviQI GTAC 4 cut(s) 107, 226, 683, 1117
DdeI CTNAG 4 cut(s) 57, 563, 1467, 1599
DpnI GATC 4 cut(s) 102, 679, 1074, 1710
DpnII GATC 4 cut(s) 100, 677, 1072, 1708
Eam1104I CTCTTC 2 cut(s) 891, 1587
EarI CTCTTC 2 cut(s) 891, 1587
Eco31I GGTCTC 2 cut(s) 630, 1628
Eco81I CCTNAGG 1 cut(s) 1599
Eco88I CYCGRG 1 cut(s) 690
EcoNI CCTNNNNNAGG 1 cut(s) 328
EcoO109I RGGNCCY 2 cut(s) 462, 549
EcoRII CCWGG 3 cut(s) 329, 628, 966
EcoT22I ATGCAT 1 cut(s) 534
Esp3I CGTCTC 1 cut(s) 888
FaeI CATG 8 cut(s) 54, 239, 747, 902, 1183, 1293, 1396, 1715
FalI AAGNNNNNCTT 8 cut(s) 57, 89, 308, 340, 902, 934, 1141, 1173
FaqI GGGAC 3 cut(s) 82, 304, 1705
FatI CATG 8 cut(s) 50, 235, 743, 898, 1179, 1289, 1392, 1711
FauI CCCGC 1 cut(s) 560
Fnu4HI GCNGC 9 cut(s) 359, 415, 502, 807, 1230, 1262, 1472, 1560, 1652
FokI GGATG 5 cut(s) 519, 686, 1082, 1238, 1432
Fsp4HI GCNGC 9 cut(s) 359, 415, 502, 807, 1230, 1262, 1472, 1560, 1652
GlaI GCGC 2 cut(s) 880, 1366
GluI GCNGC 9 cut(s) 359, 415, 502, 807, 1230, 1262, 1472, 1560, 1652
GsaI CCCAGC 1 cut(s) 162
GsuI CTGGAG 2 cut(s) 330, 496
HaeIII GGCC 3 cut(s) 361, 463, 550
HgaI GACGC 5 cut(s) 79, 364, 434, 451, 870
HhaI GCGC 2 cut(s) 881, 1367
Hin1II CATG 8 cut(s) 54, 239, 747, 902, 1183, 1293, 1396, 1715
Hin6I GCGC 2 cut(s) 879, 1365
HinP1I GCGC 2 cut(s) 879, 1365
HincII GTYRAC 3 cut(s) 117, 337, 1390
HindII GTYRAC 3 cut(s) 117, 337, 1390
HinfI GANTC 4 cut(s) 47, 1320, 1442, 1604
HpaI GTTAAC 1 cut(s) 337
HphI GGTGA 4 cut(s) 267, 747, 806, 842
Hpy166II GTNNAC 4 cut(s) 117, 337, 518, 1390
Hpy188I TCNGA 6 cut(s) 406, 493, 1468, 1591, 1609, 1725
Hpy188III TCNNGA 8 cut(s) 208, 347, 1094, 1149, 1201, 1332, 1553, 1601
Hpy8I GTNNAC 4 cut(s) 117, 337, 518, 1390
Hpy99I CGWCG 1 cut(s) 996
HpyAV CCTTC 5 cut(s) 59, 430, 517, 718, 904
HpyCH4III ACNGT 5 cut(s) 307, 439, 526, 1116, 1285
HpyCH4IV ACGT 3 cut(s) 454, 541, 651
HpyF10VI GCNNNNNNNGC 5 cut(s) 51, 552, 899, 1373, 1625
HpyF3I CTNAG 4 cut(s) 57, 563, 1467, 1599
HpySE526I ACGT 3 cut(s) 454, 541, 651
Hsp92II CATG 8 cut(s) 54, 239, 747, 902, 1183, 1293, 1396, 1715
HspAI GCGC 2 cut(s) 879, 1365
KspAI GTTAAC 1 cut(s) 337
Kzo9I GATC 4 cut(s) 100, 677, 1072, 1708
LguI GCTCTTC 1 cut(s) 1587
LmnI GCTCC 2 cut(s) 695, 1519
Lsp1109I GCAGC 8 cut(s) 426, 513, 793, 1216, 1248, 1483, 1546, 1663
MaeII ACGT 3 cut(s) 454, 541, 651
MaeIII GTNAC 3 cut(s) 352, 439, 1285
MalI GATC 4 cut(s) 102, 679, 1074, 1710
MboI GATC 4 cut(s) 100, 677, 1072, 1708
MfeI CAATTG 2 cut(s) 1571, 1641
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 651
MluI ACGCGT 1 cut(s) 443
MlyI GAGTC 1 cut(s) 1598
MmeI TCCRAC 2 cut(s) 271, 1644
MnlI CCTC 9 cut(s) 354, 652, 854, 857, 908, 1062, 1168, 1539, 1608
Mph1103I ATGCAT 1 cut(s) 534
MseI TTAA 7 cut(s) 93, 336, 579, 1101, 1566, 1584, 1729
MslI CAYNNNNRTG 3 cut(s) 135, 742, 825
MspA1I CMGCKG 1 cut(s) 1261
MspR9I CCNGG 3 cut(s) 331, 630, 968
MunI CAATTG 2 cut(s) 1571, 1641
Mva1269I GAATGC 2 cut(s) 766, 1522
MvaI CCWGG 3 cut(s) 331, 630, 968
MvnI CGCG 4 cut(s) 358, 445, 879, 881
MwoI GCNNNNNNNGC 5 cut(s) 51, 552, 899, 1373, 1625
NdeII GATC 4 cut(s) 100, 677, 1072, 1708
NheI GCTAGC 1 cut(s) 253
NlaIII CATG 8 cut(s) 54, 239, 747, 902, 1183, 1293, 1396, 1715
NlaIV GGNNCC 4 cut(s) 464, 551, 729, 965
NmuCI GTSAC 2 cut(s) 352, 439
NsiI ATGCAT 1 cut(s) 534
NspI RCATGY 2 cut(s) 902, 1293
NspV TTCGAA 1 cut(s) 80
PaeI GCATGC 1 cut(s) 902
PaqCI CACCTGC 1 cut(s) 952
PciI ACATGT 1 cut(s) 1289
PciSI GCTCTTC 1 cut(s) 1587
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PctI GAATGC 2 cut(s) 766, 1522
PfeI GAWTC 3 cut(s) 47, 1320, 1442
PflMI CCANNNNNTGG 1 cut(s) 674
PfoI TCCNGGA 1 cut(s) 628
PkrI GCNGC 9 cut(s) 360, 416, 503, 808, 1231, 1263, 1473, 1561, 1653
PleI GAGTC 1 cut(s) 1598
PpsI GAGTC 1 cut(s) 1598
PscI ACATGT 1 cut(s) 1289
PshBI ATTAAT 1 cut(s) 579
PsiI TTATAA 1 cut(s) 602
Psp6I CCWGG 3 cut(s) 329, 628, 966
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 3 cut(s) 329, 628, 966
PspN4I GGNNCC 4 cut(s) 464, 551, 729, 965
PspPI GGNCC 2 cut(s) 462, 549
PsuI RGATCY 1 cut(s) 100
PvuII CAGCTG 1 cut(s) 1261
RsaI GTAC 4 cut(s) 108, 227, 684, 1118
RsaNI GTAC 4 cut(s) 107, 226, 683, 1117
RseI CAYNNNNRTG 3 cut(s) 135, 742, 825
SapI GCTCTTC 1 cut(s) 1587
SaqAI TTAA 7 cut(s) 93, 336, 579, 1101, 1566, 1584, 1729
SatI GCNGC 9 cut(s) 359, 415, 502, 807, 1230, 1262, 1472, 1560, 1652
Sau3AI GATC 4 cut(s) 100, 677, 1072, 1708
Sau96I GGNCC 2 cut(s) 462, 549
ScaI AGTACT 1 cut(s) 684
SchI GAGTC 1 cut(s) 1598
ScrFI CCNGG 3 cut(s) 331, 630, 968
SduI GDGCHC 1 cut(s) 651
SfuI TTCGAA 1 cut(s) 80
SmiMI CAYNNNNRTG 3 cut(s) 135, 742, 825
SmlI CTYRAG 2 cut(s) 1147, 1201
SmoI CTYRAG 2 cut(s) 1147, 1201
SphI GCATGC 1 cut(s) 902
SsiI CCGC 5 cut(s) 4, 358, 553, 1232, 1376
StyD4I CCNGG 3 cut(s) 329, 628, 966
TaaI ACNGT 5 cut(s) 307, 439, 526, 1116, 1285
TaiI ACGT 3 cut(s) 457, 544, 654
TaqI TCGA 4 cut(s) 80, 657, 1036, 1054
TatI WGTACW 2 cut(s) 682, 1116
TauI GCSGC 1 cut(s) 361
TfiI GAWTC 3 cut(s) 47, 1320, 1442
Tru1I TTAA 7 cut(s) 93, 336, 579, 1101, 1566, 1584, 1729
Tru9I TTAA 7 cut(s) 93, 336, 579, 1101, 1566, 1584, 1729
TscAI CASTG 2 cut(s) 1119, 1288
TseFI GTSAC 2 cut(s) 352, 439
TseI GCWGC 8 cut(s) 414, 501, 806, 1229, 1261, 1471, 1559, 1651
Tsp45I GTSAC 2 cut(s) 352, 439
TspDTI ATGAA 6 cut(s) 252, 759, 913, 943, 1101, 1434
TspGWI ACGGA 2 cut(s) 686, 1065
TspRI CASTG 2 cut(s) 1119, 1288
Van91I CCANNNNNTGG 1 cut(s) 674
VspI ATTAAT 1 cut(s) 579
XagI CCTNNNNNAGG 1 cut(s) 328
XapI RAATTY 4 cut(s) 12, 166, 1206, 1306
XbaI TCTAGA 1 cut(s) 1552
XceI RCATGY 2 cut(s) 902, 1293
ZrmI AGTACT 1 cut(s) 684
Zsp2I ATGCAT 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.