Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001632

Physical Location & Seq

Genomic Coordinates Forward (+)

16380366 .. 16386218

Gene Structure 5853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G204200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1578 bp

ATGGAGCAACCAGAGGAGACCCACATGGTAAATGTCGGACAATGTGATGTGTGTGGTGGTATTACTGATGAAAATCTCATTGCAACTTGCATTAAATGCAATATAAGTACTGAACACTCTTATTGCATGCGGATTCTTCCAATGGAATTTCGAGATGGTTGGGTTTGTGAATCATGTGAAGTGATTTCTCCAAAAGCTGATGAGGAAGAAGGCATAATGGCATCCTGTTCTGATTTAGTTCACCATGATGTCATGCATCCAGCCGGTCCCAGCAGAGTTCTTGATGATTCAGGGTGGCAAGCTCATTCCAGAAGGCAAAAACCTGTTGAGACTGGAAAAGTTAAATTTATTGCAAATGAAGAAGTCATCAGGCTATCATCAGCAGTTAGATCTCAGCGAAGTACTTTCAGCTCCAAACCTCGTCAGTTAAATTTCATGGCACCTATCCCCCAAAGGACTCCTTTTGGGTCTAGAATTCTGACTCCAAAGTTTCCTATGTCTGCGATCAAAGCAAATTCTAGCATTATGCCTTCAAGAACTGTGAACCCTTCTAGATGTGGCGGGAGTGTCAAAATGCAAAGCATAGCAAAGATTATTCAGCAAACATCTCCAATTTTTAAGGATTCAAAAGTTATAGGAGAAACAAAGACTTCCGTAGCTTCTGGAAATGAGCATATTGGGGAGAAGCAATTAACGGATGTCTTAGTTGGTGAAACTTCTTATAAGAAGATGGAGTCCAAAACAGGAAAGGAGCCACTCACAATTTCAACAATGAGGCAATCATCACCTATTTCCAGTCCAGATAGTGAAGAAAGAGATCTCGTGAATATTTTTGATAGTCTCAATCTAAAGCCTTCGAATCTTCCTGCTCGAGATGCTCCTTGGAAGGGAGGCTTCATCCTTGATGCAGCCACACCTGGAGAATTCATTGGTGGGTTCCAAGCACGACCTCCATGTAAGGTCCATCCTAAAGCCTATGCATTTTCACAAAAAATGCCTCTCATCCTCAATGCTAACTGGCTTCCTCGATCCAGTATTTGGACTACTATCTTCCAAGACGATGACCCTGTCCTTGAAGATGTTGCCCTTTACATTTTCCCAGATGAAAACATTGAGAGATCAAGAGAGAACCATGCTCGGCTGATTAACCGCATGGAGAACCAAGATTCAATGATGCGAATTTGCTTTGATGGCAAGGGGGTGGAGTTGCTGATATTTACATCAGCAAGTCTACAGTTAGACTCACGGGTGGCAGACTTCTTATGGGGAATCTTTCGTTGTATAAAAAAGGATGTTGCTCATAATAAGGTACATGAAGGACTCCCGTCAACGGTCGATCAAGAAAACGTGGATGACAATAAGACTCTGGATATGGAAGTTGACATGGTAGGTGGAAAGATGGTGGGAAGAGTTGATATAGTGGTTCCGAGGGATTCAAAGGTTATCTGGAACACTAAATCATCATCAGAAATGAAGACCACATGTGGCTTGCAAAAGAACTTGGGAAAAGACGAGGGTAAAATCCCCCCTGAAACATTGGAGGAGGAGGAATCGGCAGGCCCACCAGGTTTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

526

Amino Acids

58.28

Weight (kDa)

5.7

Isoelectric Point (pI)

57.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61090 AT5G61090 AT5G61120 AT5G61120 AT5G61120
fragaria_vesca	FvH4_4g13540 FvH4_4g13550 FvH4_5g13930 FvH4_5g13940 FvH4_5g13940 FvH4_5g13940
malus_domestica	MD06G1202200.v1.1 MD14G1211300.v1.1
prunus_persica	Prupe.5G204200_v2.0.a1 Prupe.5G204200_v2.0.a1 Prupe.5G204400_v2.0.a1
pyrus_communis	pycom06g17820
rosa_chinensis	RchiOBHm_Chr4g0414551 RchiOBHm_Chr4g0414561 RchiOBHm_Chr4g0414571 RchiOBHm_Chr7g0183021
rosa_laevigata	RLG00000005087
rosa_multiflora	Rmu_co8299331.1_g000001 Rmu_sc0000808.1_g000022 Rmu_sc0001063.1_g000013 Rmu_sc0005196.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240320 Rroxscaffold_3G00240450 Rroxscaffold_3G00270840
rosa_rugosa	Rorug06G0451800
rosa_samantha	Rh4AG186600 Rh4AG186700 Rh4BG173800 Rh4BG184200 Rh4CG197200 Rh4CG197500 Rh4DG181800 Rh4DG181900 Rh4DG183300 Rh7AG055300 Rh7AG324400 Rh7BG054700 Rh7BG309400 Rh7CG056000 Rh7CG341300 Rh7DG054800
rosa_wichuraiana	Rw4G015750 Rw7G027480 Rw7G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	723
AccB1I	GGYRCC	1 cut(s)	439
AccB7I	CCANNNNNTGG	1 cut(s)	1038
AccI	GTMKAC	1 cut(s)	1231
AciI	CCGC	3 cut(s)	130, 561, 1150
AclWI	GGATC	1 cut(s)	1023
AcsI	RAATTY	7 cut(s)	146, 344, 430, 474, 514, 923, 1179
AfaI	GTAC	3 cut(s)	109, 403, 1311
AfiI	CCNNNNNNNGG	3 cut(s)	887, 1038, 1330
AflIII	ACRYGT	1 cut(s)	1481
AgsI	TTSAA	6 cut(s)	534, 627, 768, 1076, 1170, 1437
AjnI	CCWGG	2 cut(s)	916, 1564
AluBI	AGCT	4 cut(s)	197, 302, 411, 659
AluI	AGCT	4 cut(s)	197, 302, 411, 659
Alw26I	GTCTC	3 cut(s)	11, 323, 845
AlwI	GGATC	1 cut(s)	1023
Ama87I	CYCGRG	1 cut(s)	870
AoxI	GGCC	1 cut(s)	1558
ApeKI	GCWGC	1 cut(s)	908
ApoI	RAATTY	7 cut(s)	146, 344, 430, 474, 514, 923, 1179
AspS9I	GGNCC	3 cut(s)	266, 961, 1559
AsuHPI	GGTGA	3 cut(s)	233, 722, 777
AsuII	TTCGAA	1 cut(s)	857
AvaI	CYCGRG	1 cut(s)	870
AvaII	GGWCC	2 cut(s)	266, 961
BanI	GGYRCC	1 cut(s)	439
BauI	CACGAG	1 cut(s)	821
BbsI	GAAGAC	1 cut(s)	1481
BbvI	GCAGC	1 cut(s)	920
BccI	CCATC	5 cut(s)	149, 724, 972, 1184, 1393
BciT130I	CCWGG	2 cut(s)	918, 1566
BcoDI	GTCTC	3 cut(s)	11, 323, 845
BfaI	CTAG	3 cut(s)	471, 519, 552
BfmI	CTRYAG	1 cut(s)	1232
BglII	AGATCT	2 cut(s)	389, 817
BisI	GCNGC	1 cut(s)	909
BlsI	GCNGC	1 cut(s)	910
BmcAI	AGTACT	2 cut(s)	109, 403
Bme1390I	CCNGG	2 cut(s)	918, 1566
Bme18I	GGWCC	2 cut(s)	266, 961
BmeT110I	CYCGRG	1 cut(s)	870
BmgT120I	GGNCC	3 cut(s)	266, 961, 1559
BmiI	GGNNCC	5 cut(s)	268, 441, 753, 938, 1425
BmrFI	CCNGG	2 cut(s)	918, 1566
BmsI	GCATC	5 cut(s)	230, 265, 865, 895, 1164
BoxI	GACNNNNGTC	1 cut(s)	1324
BpiI	GAAGAC	1 cut(s)	1481
BpmI	CTGGAG	1 cut(s)	939
Bpu14I	TTCGAA	1 cut(s)	857
BsaBI	GATNNNNATC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	881, 1427
Bsc4I	CCNNNNNNNGG	3 cut(s)	887, 1038, 1330
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	4 cut(s)	337, 795, 1022, 1032
Bse3DI	GCAATG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	918, 1566
BseDI	CCNNGG	2 cut(s)	881, 1427
BseGI	GGATG	8 cut(s)	221, 256, 703, 897, 964, 1002, 1297, 1357
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	3 cut(s)	887, 1038, 1330
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	407
BseNI	ACTGG	4 cut(s)	337, 795, 1022, 1032
BseRI	GAGGAG	3 cut(s)	29, 1556, 1559
BseXI	GCAGC	1 cut(s)	920
BseYI	CCCAGC	1 cut(s)	269
Bsh1285I	CGRYCG	1 cut(s)	1335
BshFI	GGCC	1 cut(s)	1560
BshNI	GGYRCC	1 cut(s)	439
BsiEI	CGRYCG	1 cut(s)	1335
BsiHKCI	CYCGRG	1 cut(s)	870
BsiSI	CCGG	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	3 cut(s)	887, 1038, 1330
BsmAI	GTCTC	3 cut(s)	11, 323, 845
BsmFI	GGGAC	1 cut(s)	252
BsnI	GGCC	1 cut(s)	1560
Bso31I	GGTCTC	1 cut(s)	11
BsoBI	CYCGRG	1 cut(s)	870
Bsp119I	TTCGAA	1 cut(s)	857
Bsp143I	GATC	6 cut(s)	389, 504, 817, 1028, 1118, 1336
BspACI	CCGC	3 cut(s)	130, 561, 1150
BspANI	GGCC	1 cut(s)	1560
BspCNI	CTCAG	1 cut(s)	406
BspHI	TCATGA	1 cut(s)	1574
BspLI	GGNNCC	5 cut(s)	268, 441, 753, 938, 1425
BspPI	GGATC	1 cut(s)	1023
BspT104I	TTCGAA	1 cut(s)	857
BspT107I	GGYRCC	1 cut(s)	439
BspTNI	GGTCTC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	78
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	4 cut(s)	337, 795, 1022, 1032
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	881, 1427
BssMI	GATC	6 cut(s)	389, 504, 817, 1028, 1118, 1336
BssSI	CACGAG	1 cut(s)	821
BssT1I	CCWWGG	1 cut(s)	881
Bst2BI	CACGAG	1 cut(s)	821
Bst2UI	CCWGG	2 cut(s)	918, 1566
Bst4CI	ACNGT	3 cut(s)	541, 1236, 1333
Bst6I	CTCTTC	1 cut(s)	1402
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstBI	TTCGAA	1 cut(s)	857
BstC8I	GCNNGC	4 cut(s)	128, 300, 1490, 1558
BstDEI	CTNAG	2 cut(s)	393, 703
BstF5I	GGATG	8 cut(s)	221, 256, 703, 897, 964, 1002, 1297, 1357
BstKTI	GATC	6 cut(s)	392, 507, 820, 1031, 1121, 1339
BstMAI	GTCTC	3 cut(s)	11, 323, 845
BstMBI	GATC	6 cut(s)	389, 504, 817, 1028, 1118, 1336
BstMCI	CGRYCG	1 cut(s)	1335
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 509, 875, 1191
BstNI	CCWGG	2 cut(s)	918, 1566
BstNSI	RCATGY	2 cut(s)	130, 1485
BstPAI	GACNNNNGTC	1 cut(s)	1324
BstSCI	CCNGG	2 cut(s)	916, 1564
BstSFI	CTRYAG	1 cut(s)	1232
BstV1I	GCAGC	1 cut(s)	920
BstV2I	GAAGAC	1 cut(s)	1481
BstX2I	RGATCY	2 cut(s)	389, 817
BstYI	RGATCY	2 cut(s)	389, 817
BsuRI	GGCC	1 cut(s)	1560
BtsCI	GGATG	8 cut(s)	221, 256, 703, 897, 964, 1002, 1297, 1357
Cac8I	GCNNGC	4 cut(s)	128, 300, 1490, 1558
CciI	TCATGA	1 cut(s)	1574
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	3 cut(s)	266, 961, 1559
CsiI	ACCWGGT	1 cut(s)	1564
Csp6I	GTAC	3 cut(s)	108, 402, 1310
CviQI	GTAC	3 cut(s)	108, 402, 1310
DdeI	CTNAG	2 cut(s)	393, 703
DpnI	GATC	6 cut(s)	391, 506, 819, 1030, 1120, 1338
DpnII	GATC	6 cut(s)	389, 504, 817, 1028, 1118, 1336
Eam1104I	CTCTTC	1 cut(s)	1402
EarI	CTCTTC	1 cut(s)	1402
Eco130I	CCWWGG	1 cut(s)	881
Eco31I	GGTCTC	1 cut(s)	11
Eco47I	GGWCC	2 cut(s)	266, 961
Eco88I	CYCGRG	1 cut(s)	870
EcoRI	GAATTC	2 cut(s)	474, 923
EcoRII	CCWGG	2 cut(s)	916, 1564
EcoT14I	CCWWGG	1 cut(s)	881
EcoT22I	ATGCAT	2 cut(s)	258, 982
ErhI	CCWWGG	1 cut(s)	881
FalI	AAGNNNNNCTT	4 cut(s)	445, 477, 878, 910
FaqI	GGGAC	1 cut(s)	252
FauI	CCCGC	1 cut(s)	554
FblI	GTMKAC	1 cut(s)	1231
Fnu4HI	GCNGC	1 cut(s)	909
FokI	GGATG	8 cut(s)	208, 243, 710, 884, 951, 989, 1304, 1364
Fsp4HI	GCNGC	1 cut(s)	909
FspBI	CTAG	3 cut(s)	471, 519, 552
GluI	GCNGC	1 cut(s)	909
GsaI	CCCAGC	1 cut(s)	273
GsuI	CTGGAG	1 cut(s)	939
HaeIII	GGCC	1 cut(s)	1560
HapII	CCGG	1 cut(s)	264
HincII	GTYRAC	2 cut(s)	1329, 1381
HindII	GTYRAC	2 cut(s)	1329, 1381
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	3 cut(s)	233, 722, 777
Hpy166II	GTNNAC	5 cut(s)	241, 544, 1232, 1329, 1381
Hpy188I	TCNGA	5 cut(s)	38, 232, 480, 1428, 1468
Hpy8I	GTNNAC	5 cut(s)	241, 544, 1232, 1329, 1381
HpyAV	CCTTC	7 cut(s)	203, 306, 540, 558, 864, 880, 1310
HpyCH4III	ACNGT	3 cut(s)	541, 1236, 1333
HpyCH4IV	ACGT	1 cut(s)	1347
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 509, 875, 1191
HpyF3I	CTNAG	2 cut(s)	393, 703
HpySE526I	ACGT	1 cut(s)	1347
Kzo9I	GATC	6 cut(s)	389, 504, 817, 1028, 1118, 1336
LmnI	GCTCC	4 cut(s)	4, 416, 751, 883
Lsp1109I	GCAGC	1 cut(s)	920
LweI	GCATC	5 cut(s)	230, 265, 865, 895, 1164
MabI	ACCWGGT	1 cut(s)	1564
MaeI	CTAG	3 cut(s)	471, 519, 552
MaeII	ACGT	1 cut(s)	1347
MalI	GATC	6 cut(s)	391, 506, 819, 1030, 1120, 1338
MboI	GATC	6 cut(s)	389, 504, 817, 1028, 1118, 1336
MflI	RGATCY	2 cut(s)	389, 817
MlyI	GAGTC	6 cut(s)	451, 475, 743, 1235, 1314, 1357
MmeI	TCCRAC	1 cut(s)	16
Mph1103I	ATGCAT	2 cut(s)	258, 982
MseI	TTAA	6 cut(s)	93, 342, 428, 618, 692, 1146
MslI	CAYNNNNRTG	1 cut(s)	246
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	2 cut(s)	918, 1566
MvaI	CCWGG	2 cut(s)	918, 1566
MwoI	GCNNNNNNNGC	4 cut(s)	96, 509, 875, 1191
NdeII	GATC	6 cut(s)	389, 504, 817, 1028, 1118, 1336
NlaIV	GGNNCC	5 cut(s)	268, 441, 753, 938, 1425
NmeAIII	GCCGAG	1 cut(s)	1117
NsiI	ATGCAT	2 cut(s)	258, 982
NspI	RCATGY	2 cut(s)	130, 1485
NspV	TTCGAA	1 cut(s)	857
PaeI	GCATGC	1 cut(s)	130
PaeR7I	CTCGAG	1 cut(s)	870
PagI	TCATGA	1 cut(s)	1574
PciI	ACATGT	1 cut(s)	1481
PfeI	GAWTC	9 cut(s)	133, 170, 287, 623, 859, 1166, 1269, 1433, 1550
PflFI	GACNNNGTC	1 cut(s)	1067
PflMI	CCANNNNNTGG	1 cut(s)	1038
PkrI	GCNGC	1 cut(s)	910
PleI	GAGTC	6 cut(s)	451, 475, 742, 1235, 1314, 1357
PpsI	GAGTC	6 cut(s)	451, 475, 742, 1235, 1314, 1357
PscI	ACATGT	1 cut(s)	1481
PshAI	GACNNNNGTC	1 cut(s)	1324
PsiI	TTATAA	1 cut(s)	723
Psp6I	CCWGG	2 cut(s)	916, 1564
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	2 cut(s)	916, 1564
PspN4I	GGNNCC	5 cut(s)	268, 441, 753, 938, 1425
PspPI	GGNCC	3 cut(s)	266, 961, 1559
PsuI	RGATCY	2 cut(s)	389, 817
PsyI	GACNNNGTC	1 cut(s)	1067
RsaI	GTAC	3 cut(s)	109, 403, 1311
RsaNI	GTAC	3 cut(s)	108, 402, 1310
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	6 cut(s)	93, 342, 428, 618, 692, 1146
SatI	GCNGC	1 cut(s)	909
Sau3AI	GATC	6 cut(s)	389, 504, 817, 1028, 1118, 1336
Sau96I	GGNCC	3 cut(s)	266, 961, 1559
ScaI	AGTACT	2 cut(s)	109, 403
SchI	GAGTC	6 cut(s)	451, 475, 743, 1235, 1314, 1357
ScrFI	CCNGG	2 cut(s)	918, 1566
SexAI	ACCWGGT	1 cut(s)	1564
SfaNI	GCATC	5 cut(s)	230, 265, 865, 895, 1164
SfcI	CTRYAG	1 cut(s)	1232
Sfr274I	CTCGAG	1 cut(s)	870
SfuI	TTCGAA	1 cut(s)	857
SinI	GGWCC	2 cut(s)	266, 961
SlaI	CTCGAG	1 cut(s)	870
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	870
SmoI	CTYRAG	1 cut(s)	870
SphI	GCATGC	1 cut(s)	130
SsiI	CCGC	3 cut(s)	130, 561, 1150
SspI	AATATT	1 cut(s)	829
SspMI	CTAG	3 cut(s)	471, 519, 552
StyD4I	CCNGG	2 cut(s)	916, 1564
StyI	CCWWGG	1 cut(s)	881
TaaI	ACNGT	3 cut(s)	541, 1236, 1333
TaiI	ACGT	1 cut(s)	1350
TaqI	TCGA	5 cut(s)	151, 857, 871, 1027, 1335
TatI	WGTACW	2 cut(s)	107, 401
TfiI	GAWTC	9 cut(s)	133, 170, 287, 623, 859, 1166, 1269, 1433, 1550
Tru1I	TTAA	6 cut(s)	93, 342, 428, 618, 692, 1146
Tru9I	TTAA	6 cut(s)	93, 342, 428, 618, 692, 1146
TseI	GCWGC	1 cut(s)	908
TspDTI	ATGAA	9 cut(s)	84, 372, 424, 886, 916, 1119, 1329, 1487, 1563
TspGWI	ACGGA	2 cut(s)	643, 710
Tth111I	GACNNNGTC	1 cut(s)	1067
Van91I	CCANNNNNTGG	1 cut(s)	1038
VpaK11BI	GGWCC	2 cut(s)	266, 961
XapI	RAATTY	7 cut(s)	146, 344, 430, 474, 514, 923, 1179
XbaI	TCTAGA	2 cut(s)	470, 551
XceI	RCATGY	2 cut(s)	130, 1485
XhoI	CTCGAG	1 cut(s)	870
XmiI	GTMKAC	1 cut(s)	1231
XspI	CTAG	3 cut(s)	471, 519, 552
ZrmI	AGTACT	2 cut(s)	109, 403
Zsp2I	ATGCAT	2 cut(s)	258, 982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.