Rh7CG341300

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001632
Physical Location & Seq
Reverse (-)
38220759 .. 38224560
3802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG341300.1

Sequence Viewer

Length: 1179 bp
ATGCGGGTTAATCTCTCCTTGGTTGAGGACTGGGATCCGGACAATTGGGTATGCGAATCATGTGAACAGGACAATGGGATGCTTTCTCCAAACTCTGGTATTAAGGAAGACACATTAGAGTCATCAACTGGTAGAGGCCACTATGATGGCATGCATTCAGCAGGTCCCAGAAATTGTAATGGTTCAGGGTGGCAAGCTCACTCTAAGAAGCAAAAGCCTGTTGGGAATAGAAAAGTTAAGTTCATTACAAATGAAGAAGTCAGGAGGCTATCTTTGGCAAACCCGCCTCAGAAGACTCCTGTTGGGTACAAAACTGTTACTCCAAAGTCTCCTGTTTCCGGGGTTAAAGCAAATCCTAGCTTTATACATTCAGAAATTGCGATGCCTCGTAGCCATTGTAGGCCCCCCAAGATGCAAAGCATTTCAAAGATTAATCAGCAAGCATGTCAAAAATTAAAACATTCACAAGAGGAGGCTTCATCATTCTCGATTCAGAAACACCTGCTCAATTCATTGGTGGATTCCAGGCACAACCTCCCTGTACTGTACATAATAAAGCCTATGAGTTTTCACGAAAAATGCCCTGTCTTACGGGCCAATTTGCTTCCTAGATTGCTTCCTTGGGCTGATCCCTTACGAGAGGTATGTCCTGATCTTCAAGATGTTGGACTTTACTTTTTCCCTGTTGATAACATTGCCAGATCAAGAGAGACCTATGCTTTGCTGTTAGAGATCATGGATACCCAAAATTCAGTGACAAGGATTTACTTTAATGGAGTGGATGCTGTGGATTTGTTGATATTTACATCTAAACAGCTGCATTTGGAGAATACCATGACAAGTCCAAGTACAGAAAATTCCTTATGGAGAATTTTTGGTGACAATAAGAATTATTGTCGAGCTGACATGGATGACAATGGTACTACTGTTGATATGGAAGTTGACATGGCAGGTGGAAAGATGTTGGGAAACGTTGATATAGTCGTTCCGAAAGGTTCATCCACCCCTTGTAGAAGGCCTGAGACTATCATGAAAGCAGTGCAGCAACTTTTGACTATTAAGAAGGAGGAGCATTCTTCATACCAGACCAGATTAAGAGTTCTAGATTCTACTATTAAACAATTGTTGGCATTTAACTCAGATATCATCATGGATGAGCATTCTGCATCATTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

392

Amino Acids

44.08

Weight (kDa)

7.61

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 195 - 292 5.1e-14 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 510, 941
Acc36I ACCTGC 3 cut(s) 152, 510, 941
AccB7I CCANNNNNTGG 1 cut(s) 95
AccIII TCCGGA 1 cut(s) 37
AciI CCGC 2 cut(s) 4, 284
AclI AACGTT 1 cut(s) 972
AclWI GGATC 3 cut(s) 29, 42, 623
AcsI RAATTY 3 cut(s) 748, 856, 870
AfaI GTAC 5 cut(s) 308, 543, 548, 850, 922
AfiI CCNNNNNNNGG 2 cut(s) 95, 338
AgsI TTSAA 2 cut(s) 426, 659
AjnI CCWGG 1 cut(s) 524
AluBI AGCT 4 cut(s) 197, 360, 817, 902
AluI AGCT 4 cut(s) 197, 360, 817, 902
Alw26I GTCTC 3 cut(s) 333, 704, 1016
AlwI GGATC 3 cut(s) 29, 42, 623
Aor13HI TCCGGA 1 cut(s) 37
AoxI GGCC 4 cut(s) 136, 401, 594, 1016
ApeKI GCWGC 2 cut(s) 817, 1042
ApoI RAATTY 3 cut(s) 748, 856, 870
ArsI GACNNNNNNTTYG 2 cut(s) 703, 735
AseI ATTAAT 1 cut(s) 432
AspS9I GGNCC 3 cut(s) 164, 402, 594
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 890
AvaII GGWCC 1 cut(s) 164
BaeI ACNNNNGTAYC 2 cut(s) 912, 945
BamHI GGATCC 1 cut(s) 34
BbsI GAAGAC 2 cut(s) 114, 299
BbvI GCAGC 2 cut(s) 804, 1054
BccI CCATC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 526
BciVI GTATCC 1 cut(s) 733
BcnI CCSGG 1 cut(s) 340
BcoDI GTCTC 3 cut(s) 333, 704, 1016
BfaI CTAG 3 cut(s) 357, 609, 1103
BfuAI ACCTGC 3 cut(s) 152, 510, 941
BfuI GTATCC 1 cut(s) 733
BisI GCNGC 2 cut(s) 818, 1043
BlsI GCNGC 2 cut(s) 819, 1044
Bme1390I CCNGG 2 cut(s) 340, 526
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 3 cut(s) 164, 402, 594
BmiI GGNNCC 3 cut(s) 36, 166, 404
BmrFI CCNGG 2 cut(s) 340, 526
BmrI ACTGGG 1 cut(s) 40
BmsI GCATC 5 cut(s) 69, 372, 402, 772, 1175
BmuI ACTGGG 1 cut(s) 40
BpiI GAAGAC 2 cut(s) 114, 299
BpuMI CCSGG 1 cut(s) 340
BsaI GGTCTC 1 cut(s) 704
BsaJI CCNNGG 3 cut(s) 18, 339, 620
BsaWI WCCGGW 1 cut(s) 37
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 338
Bse1I ACTGG 2 cut(s) 35, 133
Bse3DI GCAATG 1 cut(s) 693
BseAI TCCGGA 1 cut(s) 37
BseBI CCWGG 1 cut(s) 526
BseDI CCNNGG 3 cut(s) 18, 339, 620
BseGI GGATG 5 cut(s) 84, 787, 916, 998, 1159
BseLI CCNNNNNNNGG 2 cut(s) 95, 338
BseMI GCAATG 1 cut(s) 693
BseMII CTCAG 3 cut(s) 302, 1011, 1152
BseNI ACTGG 2 cut(s) 35, 133
BseRI GAGGAG 2 cut(s) 485, 1082
BseXI GCAGC 2 cut(s) 804, 1054
BsgI GTGCAG 1 cut(s) 1061
BshFI GGCC 4 cut(s) 138, 403, 596, 1018
BsiSI CCGG 2 cut(s) 38, 339
BslFI GGGAC 1 cut(s) 150
BslI CCNNNNNNNGG 2 cut(s) 95, 338
BsmAI GTCTC 3 cut(s) 333, 704, 1016
BsmFI GGGAC 1 cut(s) 150
BsmI GAATGC 3 cut(s) 154, 1072, 1159
BsnI GGCC 4 cut(s) 138, 403, 596, 1018
Bso31I GGTCTC 1 cut(s) 704
Bsp13I TCCGGA 1 cut(s) 37
Bsp1407I TGTACA 1 cut(s) 546
Bsp143I GATC 5 cut(s) 34, 628, 652, 701, 732
BspACI CCGC 2 cut(s) 4, 284
BspANI GGCC 4 cut(s) 138, 403, 596, 1018
BspCNI CTCAG 3 cut(s) 301, 1012, 1151
BspEI TCCGGA 1 cut(s) 37
BspHI TCATGA 1 cut(s) 1029
BspLI GGNNCC 3 cut(s) 36, 166, 404
BspMI ACCTGC 3 cut(s) 152, 510, 941
BspPI GGATC 3 cut(s) 29, 42, 623
BspTNI GGTCTC 1 cut(s) 704
BsrDI GCAATG 1 cut(s) 693
BsrGI TGTACA 1 cut(s) 546
BsrI ACTGG 2 cut(s) 35, 133
BssECI CCNNGG 3 cut(s) 18, 339, 620
BssMI GATC 5 cut(s) 34, 628, 652, 701, 732
BssT1I CCWWGG 2 cut(s) 18, 620
Bst2UI CCWGG 1 cut(s) 526
Bst4CI ACNGT 3 cut(s) 316, 546, 928
BstAUI TGTACA 1 cut(s) 546
BstC8I GCNNGC 3 cut(s) 152, 195, 441
BstDEI CTNAG 4 cut(s) 204, 288, 1020, 1138
BstF5I GGATG 5 cut(s) 84, 787, 916, 998, 1159
BstKTI GATC 5 cut(s) 37, 631, 655, 704, 735
BstMAI GTCTC 3 cut(s) 333, 704, 1016
BstMBI GATC 5 cut(s) 34, 628, 652, 701, 732
BstNI CCWGG 1 cut(s) 526
BstNSI RCATGY 2 cut(s) 154, 447
BstSCI CCNGG 2 cut(s) 338, 524
BstV1I GCAGC 2 cut(s) 804, 1054
BstV2I GAAGAC 2 cut(s) 114, 299
BstX2I RGATCY 1 cut(s) 34
BstXI CCANNNNNNTGG 1 cut(s) 146
BstYI RGATCY 1 cut(s) 34
BsuI GTATCC 1 cut(s) 733
BsuRI GGCC 4 cut(s) 138, 403, 596, 1018
BtgZI GCGATG 1 cut(s) 395
BtsCI GGATG 5 cut(s) 84, 787, 916, 998, 1159
BtsI GCAGTG 1 cut(s) 1044
BtsIMutI CAGTG 2 cut(s) 759, 1044
BveI ACCTGC 3 cut(s) 152, 510, 941
Cac8I GCNNGC 3 cut(s) 152, 195, 441
CciI TCATGA 1 cut(s) 1029
Cfr13I GGNCC 3 cut(s) 164, 402, 594
Csp6I GTAC 5 cut(s) 307, 542, 547, 849, 921
CviAII CATG 9 cut(s) 60, 151, 444, 736, 835, 907, 946, 1030, 1150
CviQI GTAC 5 cut(s) 307, 542, 547, 849, 921
DdeI CTNAG 4 cut(s) 204, 288, 1020, 1138
DpnI GATC 5 cut(s) 36, 630, 654, 703, 734
DpnII GATC 5 cut(s) 34, 628, 652, 701, 732
Eco130I CCWWGG 2 cut(s) 18, 620
Eco147I AGGCCT 1 cut(s) 1018
Eco31I GGTCTC 1 cut(s) 704
Eco32I GATATC 1 cut(s) 1144
Eco47I GGWCC 1 cut(s) 164
EcoO109I RGGNCCY 2 cut(s) 164, 402
EcoRII CCWGG 1 cut(s) 524
EcoRV GATATC 1 cut(s) 1144
EcoT14I CCWWGG 2 cut(s) 18, 620
EcoT22I ATGCAT 1 cut(s) 156
ErhI CCWWGG 2 cut(s) 18, 620
FaeI CATG 9 cut(s) 63, 154, 447, 739, 838, 910, 949, 1033, 1153
FaqI GGGAC 1 cut(s) 150
FatI CATG 9 cut(s) 59, 150, 443, 735, 834, 906, 945, 1029, 1149
FauI CCCGC 1 cut(s) 291
Fnu4HI GCNGC 2 cut(s) 818, 1043
FokI GGATG 5 cut(s) 91, 794, 923, 985, 1166
Fsp4HI GCNGC 2 cut(s) 818, 1043
FspBI CTAG 3 cut(s) 357, 609, 1103
GluI GCNGC 2 cut(s) 818, 1043
HaeIII GGCC 4 cut(s) 138, 403, 596, 1018
HapII CCGG 2 cut(s) 38, 339
Hin1II CATG 9 cut(s) 63, 154, 447, 739, 838, 910, 949, 1033, 1153
HincII GTYRAC 1 cut(s) 943
HindII GTYRAC 1 cut(s) 943
HinfI GANTC 6 cut(s) 56, 119, 295, 490, 521, 1106
HpaII CCGG 2 cut(s) 38, 339
HphI GGTGA 1 cut(s) 890
Hpy166II GTNNAC 2 cut(s) 65, 943
Hpy188I TCNGA 5 cut(s) 291, 373, 495, 990, 1141
Hpy188III TCNNGA 9 cut(s) 38, 262, 487, 572, 650, 659, 705, 1030, 1103
Hpy8I GTNNAC 2 cut(s) 65, 943
HpyAV CCTTC 2 cut(s) 1008, 1057
HpyCH4III ACNGT 3 cut(s) 316, 546, 928
HpyCH4IV ACGT 1 cut(s) 972
HpyCH4V TGCA 5 cut(s) 154, 415, 820, 1042, 1166
HpyF3I CTNAG 4 cut(s) 204, 288, 1020, 1138
HpySE526I ACGT 1 cut(s) 972
Hsp92II CATG 9 cut(s) 63, 154, 447, 739, 838, 910, 949, 1033, 1153
Kpn2I TCCGGA 1 cut(s) 37
Kzo9I GATC 5 cut(s) 34, 628, 652, 701, 732
LmnI GCTCC 1 cut(s) 1069
Lsp1109I GCAGC 2 cut(s) 804, 1054
LweI GCATC 5 cut(s) 69, 372, 402, 772, 1175
MaeI CTAG 3 cut(s) 357, 609, 1103
MaeII ACGT 1 cut(s) 972
MaeIII GTNAC 3 cut(s) 316, 754, 878
MalI GATC 5 cut(s) 36, 630, 654, 703, 734
MboI GATC 5 cut(s) 34, 628, 652, 701, 732
MboII GAAGA 5 cut(s) 119, 266, 304, 647, 1068
MfeI CAATTG 2 cut(s) 43, 1121
MflI RGATCY 1 cut(s) 34
MlyI GAGTC 2 cut(s) 128, 289
MmeI TCCRAC 1 cut(s) 646
Mph1103I ATGCAT 1 cut(s) 156
MroI TCCGGA 1 cut(s) 37
MslI CAYNNNNRTG 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 817
MspI CCGG 2 cut(s) 38, 339
MspR9I CCNGG 2 cut(s) 340, 526
MunI CAATTG 2 cut(s) 43, 1121
Mva1269I GAATGC 3 cut(s) 154, 1072, 1159
MvaI CCWGG 1 cut(s) 526
NciI CCSGG 1 cut(s) 340
NdeII GATC 5 cut(s) 34, 628, 652, 701, 732
NlaIII CATG 9 cut(s) 63, 154, 447, 739, 838, 910, 949, 1033, 1153
NlaIV GGNNCC 3 cut(s) 36, 166, 404
NmuCI GTSAC 2 cut(s) 754, 878
NsiI ATGCAT 1 cut(s) 156
NspI RCATGY 2 cut(s) 154, 447
PaeI GCATGC 1 cut(s) 154
PagI TCATGA 1 cut(s) 1029
PaqCI CACCTGC 2 cut(s) 510, 941
PceI AGGCCT 1 cut(s) 1018
PctI GAATGC 3 cut(s) 154, 1072, 1159
PfeI GAWTC 4 cut(s) 56, 490, 521, 1106
PflMI CCANNNNNTGG 1 cut(s) 95
PkrI GCNGC 2 cut(s) 819, 1044
PleI GAGTC 2 cut(s) 127, 289
PpsI GAGTC 2 cut(s) 127, 289
PpuMI RGGWCCY 1 cut(s) 164
PshBI ATTAAT 1 cut(s) 432
Psp1406I AACGTT 1 cut(s) 972
Psp5II RGGWCCY 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 524
PspGI CCWGG 1 cut(s) 524
PspN4I GGNNCC 3 cut(s) 36, 166, 404
PspPI GGNCC 3 cut(s) 164, 402, 594
PspPPI RGGWCCY 1 cut(s) 164
PsuI RGATCY 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 817
RsaI GTAC 5 cut(s) 308, 543, 548, 850, 922
RsaNI GTAC 5 cut(s) 307, 542, 547, 849, 921
RseI CAYNNNNRTG 1 cut(s) 144
SatI GCNGC 2 cut(s) 818, 1043
Sau3AI GATC 5 cut(s) 34, 628, 652, 701, 732
Sau96I GGNCC 3 cut(s) 164, 402, 594
SchI GAGTC 2 cut(s) 128, 289
ScrFI CCNGG 2 cut(s) 340, 526
SfaNI GCATC 5 cut(s) 69, 372, 402, 772, 1175
SinI GGWCC 1 cut(s) 164
SmiMI CAYNNNNRTG 1 cut(s) 144
SphI GCATGC 1 cut(s) 154
SseBI AGGCCT 1 cut(s) 1018
SsiI CCGC 2 cut(s) 4, 284
SspMI CTAG 3 cut(s) 357, 609, 1103
StuI AGGCCT 1 cut(s) 1018
StyD4I CCNGG 2 cut(s) 338, 524
StyI CCWWGG 2 cut(s) 18, 620
TaaI ACNGT 3 cut(s) 316, 546, 928
TaiI ACGT 1 cut(s) 975
TaqI TCGA 2 cut(s) 488, 898
TatI WGTACW 3 cut(s) 541, 546, 848
TfiI GAWTC 4 cut(s) 56, 490, 521, 1106
TscAI CASTG 2 cut(s) 759, 1044
TseFI GTSAC 2 cut(s) 754, 878
TseI GCWGC 2 cut(s) 817, 1042
Tsp45I GTSAC 2 cut(s) 754, 878
TspDTI ATGAA 7 cut(s) 232, 267, 468, 501, 987, 1046, 1068
TspRI CASTG 2 cut(s) 759, 1044
Van91I CCANNNNNTGG 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 164
VspI ATTAAT 1 cut(s) 432
XapI RAATTY 3 cut(s) 748, 856, 870
XbaI TCTAGA 1 cut(s) 1102
XceI RCATGY 2 cut(s) 154, 447
XspI CTAG 3 cut(s) 357, 609, 1103
Zsp2I ATGCAT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.