Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001632

Physical Location & Seq

Genomic Coordinates Forward (+)

16388994 .. 16389833

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G204400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGAATCCGATCATTAACATACTAGTTCATGTCAATATTCAGTGCCAAAGCTTCTTATGCGGATTCTTTCGTTGTATAAATAAGGATCATATTCATAACAAAGTACATGAAGGGTTCCCTTCAACGATTGATCAAGCAAACATGACAACGACAAGGAGACTCTGGATATGGAAGTTGACATGGTATGGTAGGTGGAGGGATGGTGGGAACAATAGAGTTGATGTAGTGGTTGTTCTGCCAGTGGAACATCAACATACAGATGCTGCTTATCCTACACATTGTCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

97

Amino Acids

11.28

Weight (kDa)

8.84

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61090 AT5G61090 AT5G61120 AT5G61120 AT5G61120
fragaria_vesca	FvH4_4g13540 FvH4_4g13550 FvH4_5g13930 FvH4_5g13940 FvH4_5g13940 FvH4_5g13940
malus_domestica	MD06G1202200.v1.1 MD14G1211300.v1.1
prunus_persica	Prupe.5G204200_v2.0.a1 Prupe.5G204200_v2.0.a1 Prupe.5G204400_v2.0.a1
pyrus_communis	pycom06g17820
rosa_chinensis	RchiOBHm_Chr4g0414551 RchiOBHm_Chr4g0414561 RchiOBHm_Chr4g0414571 RchiOBHm_Chr7g0183021
rosa_laevigata	RLG00000005087
rosa_multiflora	Rmu_co8299331.1_g000001 Rmu_sc0000808.1_g000022 Rmu_sc0001063.1_g000013 Rmu_sc0005196.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240320 Rroxscaffold_3G00240450 Rroxscaffold_3G00270840
rosa_rugosa	Rorug06G0451800
rosa_samantha	Rh4AG186600 Rh4AG186700 Rh4BG173800 Rh4BG184200 Rh4CG197200 Rh4CG197500 Rh4DG181800 Rh4DG181900 Rh4DG183300 Rh7AG055300 Rh7AG324400 Rh7BG054700 Rh7BG309400 Rh7CG056000 Rh7CG341300 Rh7DG054800
rosa_wichuraiana	Rw4G015750 Rw7G027480 Rw7G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	60
AclWI	GGATC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	105
AgsI	TTSAA	1 cut(s)	123
AhlI	ACTAGT	1 cut(s)	22
AluBI	AGCT	1 cut(s)	51
AluI	AGCT	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	1 cut(s)	93
AlwNI	CAGNNNCTG	1 cut(s)	263
ApeKI	GCWGC	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	1 cut(s)	194
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	151
BcuI	ACTAGT	1 cut(s)	22
BfaI	CTAG	1 cut(s)	23
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	116
BmsI	GCATC	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bse1I	ACTGG	1 cut(s)	239
BseGI	GGATG	1 cut(s)	205
BseNI	ACTGG	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	151
Bsp143I	GATC	3 cut(s)	9, 85, 130
BspACI	CCGC	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	116
BspPI	GGATC	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	239
BssMI	GATC	3 cut(s)	9, 85, 130
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	3 cut(s)	12, 88, 133
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	3 cut(s)	9, 85, 130
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	205
BtsIMutI	CAGTG	2 cut(s)	47, 246
CaiI	CAGNNNCTG	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	4 cut(s)	29, 107, 142, 180
CviJI	RGCY	1 cut(s)	51
CviKI_1	RGCY	1 cut(s)	51
CviQI	GTAC	1 cut(s)	104
DpnI	GATC	3 cut(s)	11, 87, 132
DpnII	GATC	3 cut(s)	9, 85, 130
FaeI	CATG	4 cut(s)	32, 110, 145, 183
FatI	CATG	4 cut(s)	28, 106, 141, 179
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	1 cut(s)	264
Hin1II	CATG	4 cut(s)	32, 110, 145, 183
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HindIII	AAGCTT	1 cut(s)	49
HinfI	GANTC	3 cut(s)	4, 63, 159
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	2 cut(s)	9, 285
Hpy188III	TCNNGA	1 cut(s)	163
Hpy8I	GTNNAC	1 cut(s)	177
HpyAV	CCTTC	2 cut(s)	104, 129
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
Hsp92II	CATG	4 cut(s)	32, 110, 145, 183
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	3 cut(s)	9, 85, 130
LpnPI	CCDG	2 cut(s)	148, 252
Lsp1109I	GCAGC	1 cut(s)	250
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	23
MalI	GATC	3 cut(s)	11, 87, 132
MboI	GATC	3 cut(s)	9, 85, 130
MlyI	GAGTC	1 cut(s)	153
MnlI	CCTC	1 cut(s)	189
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	57
NdeII	GATC	3 cut(s)	9, 85, 130
NlaIII	CATG	4 cut(s)	32, 110, 145, 183
NlaIV	GGNNCC	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	4, 63
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	116
PsrI	GAACNNNNNNTAC	2 cut(s)	216, 248
PstNI	CAGNNNCTG	1 cut(s)	263
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	3 cut(s)	9, 85, 130
SchI	GAGTC	1 cut(s)	153
SetI	ASST	2 cut(s)	53, 194
SfaNI	GCATC	1 cut(s)	250
SgeI	CNNG	9 cut(s)	35, 41, 119, 146, 154, 165, 175, 192, 251
SmiMI	CAYNNNNRTG	1 cut(s)	258
SpeI	ACTAGT	1 cut(s)	22
SsiI	CCGC	1 cut(s)	60
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	1 cut(s)	23
TatI	WGTACW	1 cut(s)	103
TfiI	GAWTC	2 cut(s)	4, 63
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	2 cut(s)	47, 246
TseI	GCWGC	1 cut(s)	263
TspDTI	ATGAA	4 cut(s)	17, 17, 83, 123
TspRI	CASTG	2 cut(s)	47, 246
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.