Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001632

Physical Location & Seq

Genomic Coordinates Reverse (-)

39060273 .. 39063114

Gene Structure 2842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38495

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTTTTTTTTCCTAAGATCCCTGTTTTATCTTCATAATCATCTTACTATAATTGTTTCTGCTCGATGTAACTATTTTCTGCACTATCCTAACCCTAACATGTTGTATTGTGTTCTCCGATGTTTCAGTTATTGCATGCGGGTTAATCCCTCCTTGGTCGAGGACTGGGATTCGGACAATTGGGTATGCGAATCATGTGAACAGGGCAATGGGATGCTTTCTCCAAACTCTAGTATTAAGGAAGACACATTAGAGTCATCAACCAGTCGAGGCCACTATGATGGCGTGCATTCAACAGGTCCCAGCAGAAATTGTAATGGTTCAGGGTGGCAATCTCACTCTAAGAGGCAAAAGCCTGTTGTGAATGGAAAAGTTAAGTTCATTACAAATGAAAAATTCAGGAGGCTATCTTTGGCAGACCCGTCTCAGAAGACTCCTGTTGGGTACAAAACTATTACTCCAAAGTCTCCTGTTTCCGGGGTTAAAGAAAATCAAAATTTGAAACATTCACAAGATGCTGAAACTTGTAAGAAGAAGGAGACTGCTTCAAAAAGGAAGTCATCCACAATTACAACATTGAGGAACTTTTCACCTATATCTAGTCCAGAAAAAAGGGCTCCTGGAACACCCACAAAAGGGCATATTATAAAAGAACAACCAATTGATGCATCACTACTTTCTGAGGGAGTTGAAACTTCTAGTAGGATGACAGTAGAGGAACAGACCAAATTCTCATGCACACCATCAACATCAAGGCATTCACCATTTAATAATAGTTATGGACCTTATGGAGGCAACACTTCTACTGATGAAAATAATCATTCAGATGATAGAGAGAGAGACCACCTGAATAAGTTTCCTAGTTTCCACTCGTATTCTCCTGCTTTACATGCTACTTGGAAGGGAGGCTTCATCATTCTTGATTCAGAAACACCTGCTCAATTCATTGGTGGATTCCAAGCACAACCTCCCTGTACTGTACATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

329

Amino Acids

36.89

Weight (kDa)

8.83

Isoelectric Point (pI)

57.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61090 AT5G61090 AT5G61120 AT5G61120 AT5G61120
fragaria_vesca	FvH4_4g13540 FvH4_4g13550 FvH4_5g13930 FvH4_5g13940 FvH4_5g13940 FvH4_5g13940
malus_domestica	MD06G1202200.v1.1 MD14G1211300.v1.1
prunus_persica	Prupe.5G204200_v2.0.a1 Prupe.5G204200_v2.0.a1 Prupe.5G204400_v2.0.a1
pyrus_communis	pycom06g17820
rosa_chinensis	RchiOBHm_Chr4g0414551 RchiOBHm_Chr4g0414561 RchiOBHm_Chr4g0414571 RchiOBHm_Chr7g0183021
rosa_laevigata	RLG00000005087
rosa_multiflora	Rmu_co8299331.1_g000001 Rmu_sc0000808.1_g000022 Rmu_sc0001063.1_g000013 Rmu_sc0005196.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240320 Rroxscaffold_3G00240450 Rroxscaffold_3G00270840
rosa_rugosa	Rorug06G0451800
rosa_samantha	Rh4AG186600 Rh4AG186700 Rh4BG173800 Rh4BG184200 Rh4CG197200 Rh4CG197500 Rh4DG181800 Rh4DG181900 Rh4DG183300 Rh7AG055300 Rh7AG324400 Rh7BG054700 Rh7BG309400 Rh7CG056000 Rh7CG341300 Rh7DG054800
rosa_wichuraiana	Rw4G015750 Rw7G027480 Rw7G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	647
AarI	CACCTGC	1 cut(s)	943
Acc36I	ACCTGC	1 cut(s)	943
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	3 cut(s)	395, 496, 728
AfaI	GTAC	3 cut(s)	446, 976, 981
AfiI	CCNNNNNNNGG	4 cut(s)	476, 635, 636, 791
AflIII	ACRYGT	1 cut(s)	99
AgsI	TTSAA	4 cut(s)	294, 502, 549, 692
AjnI	CCWGG	1 cut(s)	619
Alw26I	GTCTC	4 cut(s)	429, 471, 533, 834
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	271
ApoI	RAATTY	3 cut(s)	395, 496, 728
ArsI	GACNNNNNNTTYG	2 cut(s)	542, 574
AspS9I	GGNCC	2 cut(s)	299, 782
AsuC2I	CCSGG	1 cut(s)	478
AsuHPI	GGTGA	2 cut(s)	582, 753
AvaII	GGWCC	2 cut(s)	299, 782
BanII	GRGCYC	1 cut(s)	619
BbsI	GAAGAC	2 cut(s)	249, 437
BccI	CCATC	2 cut(s)	275, 751
BciT130I	CCWGG	1 cut(s)	621
BcnI	CCSGG	1 cut(s)	478
BcoDI	GTCTC	4 cut(s)	429, 471, 533, 834
BfaI	CTAG	4 cut(s)	231, 600, 699, 861
BfuAI	ACCTGC	1 cut(s)	943
Bme1390I	CCNGG	2 cut(s)	478, 621
Bme18I	GGWCC	2 cut(s)	299, 782
BmgT120I	GGNCC	2 cut(s)	299, 782
BmiI	GGNNCC	2 cut(s)	301, 618
BmrFI	CCNGG	2 cut(s)	478, 621
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	4 cut(s)	204, 505, 655, 677
BmuI	ACTGGG	1 cut(s)	175
BpiI	GAAGAC	2 cut(s)	249, 437
BpuMI	CCSGG	1 cut(s)	478
BsaI	GGTCTC	1 cut(s)	834
BsaJI	CCNNGG	2 cut(s)	153, 477
BsaXI	ACNNNNNCTCC	2 cut(s)	442, 472
Bsc4I	CCNNNNNNNGG	4 cut(s)	476, 635, 636, 791
Bse1I	ACTGG	2 cut(s)	170, 264
Bse3DI	GCAATG	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	621
BseDI	CCNNGG	2 cut(s)	153, 477
BseGI	GGATG	3 cut(s)	219, 560, 711
BseLI	CCNNNNNNNGG	4 cut(s)	476, 635, 636, 791
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	2 cut(s)	440, 672
BseNI	ACTGG	2 cut(s)	170, 264
BseYI	CCCAGC	1 cut(s)	302
BsgI	GTGCAG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	477
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	4 cut(s)	476, 635, 636, 791
BsmAI	GTCTC	4 cut(s)	429, 471, 533, 834
BsmBI	CGTCTC	1 cut(s)	429
BsmFI	GGGAC	1 cut(s)	285
BsmI	GAATGC	2 cut(s)	289, 757
BsnI	GGCC	1 cut(s)	273
Bso31I	GGTCTC	1 cut(s)	834
Bsp1286I	GDGCHC	1 cut(s)	619
Bsp1407I	TGTACA	1 cut(s)	979
Bsp143I	GATC	1 cut(s)	17
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	2 cut(s)	439, 673
BspLI	GGNNCC	2 cut(s)	301, 618
BspMI	ACCTGC	1 cut(s)	943
BspPI	GGATC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	834
BsrDI	GCAATG	1 cut(s)	214
BsrGI	TGTACA	1 cut(s)	979
BsrI	ACTGG	2 cut(s)	170, 264
BssECI	CCNNGG	2 cut(s)	153, 477
BssMI	GATC	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	621
Bst4CI	ACNGT	2 cut(s)	712, 979
BstAUI	TGTACA	1 cut(s)	979
BstC8I	GCNNGC	2 cut(s)	137, 287
BstDEI	CTNAG	4 cut(s)	14, 342, 426, 681
BstENI	CCTNNNNNAGG	1 cut(s)	789
BstF5I	GGATG	3 cut(s)	219, 560, 711
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	4 cut(s)	429, 471, 533, 834
BstMBI	GATC	1 cut(s)	17
BstMWI	GCNNNNNNNGC	1 cut(s)	890
BstNI	CCWGG	1 cut(s)	621
BstNSI	RCATGY	3 cut(s)	103, 139, 893
BstSCI	CCNGG	2 cut(s)	476, 619
BstV2I	GAAGAC	2 cut(s)	249, 437
BstX2I	RGATCY	1 cut(s)	17
BstXI	CCANNNNNNTGG	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	273
BtsCI	GGATG	3 cut(s)	219, 560, 711
BveI	ACCTGC	1 cut(s)	943
Cac8I	GCNNGC	2 cut(s)	137, 287
Cfr13I	GGNCC	2 cut(s)	299, 782
Csp6I	GTAC	3 cut(s)	445, 975, 980
CviAII	CATG	5 cut(s)	100, 136, 195, 735, 890
CviJI	RGCY	5 cut(s)	273, 355, 406, 617, 909
CviKI_1	RGCY	5 cut(s)	273, 355, 406, 617, 909
CviQI	GTAC	3 cut(s)	445, 975, 980
DdeI	CTNAG	4 cut(s)	14, 342, 426, 681
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	619
Eco31I	GGTCTC	1 cut(s)	834
Eco47I	GGWCC	2 cut(s)	299, 782
EcoNI	CCTNNNNNAGG	1 cut(s)	789
EcoO109I	RGGNCCY	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	670
EcoT38I	GRGCYC	1 cut(s)	619
ErhI	CCWWGG	1 cut(s)	153
Esp3I	CGTCTC	1 cut(s)	429
FaeI	CATG	5 cut(s)	103, 139, 198, 738, 893
FalI	AAGNNNNNCTT	2 cut(s)	893, 925
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	5 cut(s)	99, 135, 194, 734, 889
FauI	CCCGC	1 cut(s)	132
FokI	GGATG	3 cut(s)	226, 547, 718
FriOI	GRGCYC	1 cut(s)	619
FspBI	CTAG	4 cut(s)	231, 600, 699, 861
GsaI	CCCAGC	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	273
HapII	CCGG	1 cut(s)	477
Hin1II	CATG	5 cut(s)	103, 139, 198, 738, 893
HinfI	GANTC	6 cut(s)	170, 191, 254, 433, 923, 954
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	2 cut(s)	582, 753
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	6 cut(s)	119, 175, 429, 682, 826, 928
Hpy188III	TCNNGA	3 cut(s)	400, 605, 920
Hpy8I	GTNNAC	1 cut(s)	200
HpyAV	CCTTC	2 cut(s)	529, 895
HpyCH4III	ACNGT	2 cut(s)	712, 979
HpyCH4V	TGCA	5 cut(s)	82, 135, 289, 668, 738
HpyF10VI	GCNNNNNNNGC	1 cut(s)	890
HpyF3I	CTNAG	4 cut(s)	14, 342, 426, 681
Hsp92II	CATG	5 cut(s)	103, 139, 198, 738, 893
Kzo9I	GATC	1 cut(s)	17
LmnI	GCTCC	1 cut(s)	622
LweI	GCATC	4 cut(s)	204, 505, 655, 677
MaeI	CTAG	4 cut(s)	231, 600, 699, 861
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	4 cut(s)	23, 254, 442, 544
MfeI	CAATTG	2 cut(s)	178, 660
MflI	RGATCY	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	619
MluCI	AATT	9 cut(s)	51, 178, 310, 395, 496, 567, 660, 728, 941
MlyI	GAGTC	2 cut(s)	263, 427
Mph1103I	ATGCAT	1 cut(s)	670
MseI	TTAA	5 cut(s)	144, 237, 375, 483, 768
MslI	CAYNNNNRTG	2 cut(s)	279, 825
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	2 cut(s)	478, 621
MunI	CAATTG	2 cut(s)	178, 660
Mva1269I	GAATGC	2 cut(s)	289, 757
MvaI	CCWGG	1 cut(s)	621
MwoI	GCNNNNNNNGC	1 cut(s)	890
NciI	CCSGG	1 cut(s)	478
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	5 cut(s)	103, 139, 198, 738, 893
NlaIV	GGNNCC	2 cut(s)	301, 618
NsiI	ATGCAT	1 cut(s)	670
NspI	RCATGY	3 cut(s)	103, 139, 893
PaeI	GCATGC	1 cut(s)	139
PaqCI	CACCTGC	1 cut(s)	943
PciI	ACATGT	1 cut(s)	99
PctI	GAATGC	2 cut(s)	289, 757
PfeI	GAWTC	4 cut(s)	170, 191, 923, 954
PfoI	TCCNGGA	1 cut(s)	619
PleI	GAGTC	2 cut(s)	262, 427
PpsI	GAGTC	2 cut(s)	262, 427
PpuMI	RGGWCCY	1 cut(s)	299
PscI	ACATGT	1 cut(s)	99
PsiI	TTATAA	1 cut(s)	647
Psp5II	RGGWCCY	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	619
PspFI	CCCAGC	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	619
PspN4I	GGNNCC	2 cut(s)	301, 618
PspPI	GGNCC	2 cut(s)	299, 782
PspPPI	RGGWCCY	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	17
RsaI	GTAC	3 cut(s)	446, 976, 981
RsaNI	GTAC	3 cut(s)	445, 975, 980
RseI	CAYNNNNRTG	2 cut(s)	279, 825
SaqAI	TTAA	5 cut(s)	144, 237, 375, 483, 768
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	2 cut(s)	299, 782
SchI	GAGTC	2 cut(s)	263, 427
ScrFI	CCNGG	2 cut(s)	478, 621
SduI	GDGCHC	1 cut(s)	619
SetI	ASST	6 cut(s)	301, 595, 787, 849, 937, 970
SfaNI	GCATC	4 cut(s)	204, 505, 655, 677
SinI	GGWCC	2 cut(s)	299, 782
SmiMI	CAYNNNNRTG	2 cut(s)	279, 825
SphI	GCATGC	1 cut(s)	139
Sse9I	AATT	9 cut(s)	51, 178, 310, 395, 496, 567, 660, 728, 941
SsiI	CCGC	1 cut(s)	139
SspMI	CTAG	4 cut(s)	231, 600, 699, 861
StyD4I	CCNGG	2 cut(s)	476, 619
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	712, 979
TaqI	TCGA	3 cut(s)	64, 159, 268
TasI	AATT	9 cut(s)	51, 178, 310, 395, 496, 567, 660, 728, 941
TatI	WGTACW	2 cut(s)	974, 979
TfiI	GAWTC	4 cut(s)	170, 191, 923, 954
Tru1I	TTAA	5 cut(s)	144, 237, 375, 483, 768
Tru9I	TTAA	5 cut(s)	144, 237, 375, 483, 768
TspDTI	ATGAA	6 cut(s)	23, 370, 405, 825, 901, 934
VpaK11BI	GGWCC	2 cut(s)	299, 782
XagI	CCTNNNNNAGG	1 cut(s)	789
XapI	RAATTY	3 cut(s)	395, 496, 728
XceI	RCATGY	3 cut(s)	103, 139, 893
XspI	CTAG	4 cut(s)	231, 600, 699, 861
Zsp2I	ATGCAT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.