Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001632

Physical Location & Seq

Genomic Coordinates Forward (+)

32164471 .. 32165535

Gene Structure 1065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00240450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAGTTTTCACGAAAAATGCCCTGTCTTACGGGCCAATTTGCTTCCTAGATTGCTTCCTTGGGCTGATCCCTTCCGAGAGGAATGTCCTGATCTTCAAGATGTTGGACTTTACTTTTTCCCTGTTGATAACATTGCCAGATCAAGAGAGACCTATGCTTTGCTGTTAGAGGTCATGGATACCCAAAATTCAGTGACGAGGATTTACTTTAATGGAGTGGATGCTGTGGATTTGTTGATATTTACATCTAAACAGCTGCATTTGGAGAATACCATGACAAGTCCAAGTACAGAAAATTTCTTATGGAGAATTTTTGGTGACAAGAATCATTGTCGAGCTGACATGGATGACAATGGTACTACTGTTGATATGGAAGTTGACATGGCTGGTGGAAAGATGTTGGGAAACGTTGATATAGTCGTTCCGAAAGGTTCATCCACCCCTTGTAGAAGGCCTGAGACTATCATGAAAGCAGTGCAGCAACTTTTGACTATTAAGAAGGAGGAGCATTCTTCATACCAGACCAGATTAAGAGTTCTAGATTCTACTATTAAACAATTGTTGGCATTTAACTCAGATATCATGAAGGATGAGCATTCTGCATCATCGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

204

Amino Acids

23.2

Weight (kDa)

5.23

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPOC_AIPP2	PF23121	9 - 105	7e-18	AIPP2, SPOC-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61090 AT5G61090 AT5G61120 AT5G61120 AT5G61120
fragaria_vesca	FvH4_4g13540 FvH4_4g13550 FvH4_5g13930 FvH4_5g13940 FvH4_5g13940 FvH4_5g13940
malus_domestica	MD06G1202200.v1.1 MD14G1211300.v1.1
prunus_persica	Prupe.5G204200_v2.0.a1 Prupe.5G204200_v2.0.a1 Prupe.5G204400_v2.0.a1
pyrus_communis	pycom06g17820
rosa_chinensis	RchiOBHm_Chr4g0414551 RchiOBHm_Chr4g0414561 RchiOBHm_Chr4g0414571 RchiOBHm_Chr7g0183021
rosa_laevigata	RLG00000005087
rosa_multiflora	Rmu_co8299331.1_g000001 Rmu_sc0000808.1_g000022 Rmu_sc0001063.1_g000013 Rmu_sc0005196.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240320 Rroxscaffold_3G00240450 Rroxscaffold_3G00270840
rosa_rugosa	Rorug06G0451800
rosa_samantha	Rh4AG186600 Rh4AG186700 Rh4BG173800 Rh4BG184200 Rh4CG197200 Rh4CG197500 Rh4DG181800 Rh4DG181900 Rh4DG183300 Rh7AG055300 Rh7AG324400 Rh7BG054700 Rh7BG309400 Rh7CG056000 Rh7CG341300 Rh7DG054800
rosa_wichuraiana	Rw4G015750 Rw7G027480 Rw7G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	408
AclWI	GGATC	1 cut(s)	62
AcsI	RAATTY	3 cut(s)	187, 295, 309
AfaI	GTAC	2 cut(s)	289, 358
AgsI	TTSAA	1 cut(s)	98
AluBI	AGCT	2 cut(s)	256, 338
AluI	AGCT	2 cut(s)	256, 338
Alw26I	GTCTC	2 cut(s)	143, 452
AlwI	GGATC	1 cut(s)	62
AoxI	GGCC	2 cut(s)	33, 452
ApeKI	GCWGC	2 cut(s)	256, 478
ApoI	RAATTY	3 cut(s)	187, 295, 309
ArsI	GACNNNNNNTTYG	2 cut(s)	142, 174
AspS9I	GGNCC	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	329
BaeI	ACNNNNGTAYC	2 cut(s)	348, 381
BbvI	GCAGC	2 cut(s)	243, 490
BciVI	GTATCC	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	143, 452
BfaI	CTAG	2 cut(s)	48, 539
BfuI	GTATCC	1 cut(s)	172
BisI	GCNGC	2 cut(s)	257, 479
BlsI	GCNGC	2 cut(s)	258, 480
BmgT120I	GGNCC	1 cut(s)	33
BmsI	GCATC	2 cut(s)	211, 611
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	4 cut(s)	226, 352, 434, 595
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	2 cut(s)	447, 588
BseRI	GAGGAG	1 cut(s)	518
BseXI	GCAGC	2 cut(s)	243, 490
BsgI	GTGCAG	1 cut(s)	497
BshFI	GGCC	2 cut(s)	35, 454
BsmAI	GTCTC	2 cut(s)	143, 452
BsmI	GAATGC	2 cut(s)	508, 595
BsnI	GGCC	2 cut(s)	35, 454
Bso31I	GGTCTC	1 cut(s)	143
Bsp143I	GATC	3 cut(s)	67, 91, 140
BspANI	GGCC	2 cut(s)	35, 454
BspCNI	CTCAG	2 cut(s)	448, 587
BspHI	TCATGA	2 cut(s)	465, 582
BspPI	GGATC	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	3 cut(s)	67, 91, 140
BssT1I	CCWWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	364
BstDEI	CTNAG	2 cut(s)	456, 574
BstF5I	GGATG	4 cut(s)	226, 352, 434, 595
BstKTI	GATC	3 cut(s)	70, 94, 143
BstMAI	GTCTC	2 cut(s)	143, 452
BstMBI	GATC	3 cut(s)	67, 91, 140
BstV1I	GCAGC	2 cut(s)	243, 490
BsuI	GTATCC	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	35, 454
BtsCI	GGATG	4 cut(s)	226, 352, 434, 595
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	2 cut(s)	198, 480
CciI	TCATGA	2 cut(s)	465, 582
Cfr13I	GGNCC	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	288, 357
CviAII	CATG	6 cut(s)	175, 274, 343, 382, 466, 583
CviJI	RGCY	6 cut(s)	35, 65, 256, 338, 386, 454
CviKI_1	RGCY	6 cut(s)	35, 65, 256, 338, 386, 454
CviQI	GTAC	2 cut(s)	288, 357
DdeI	CTNAG	2 cut(s)	456, 574
DpnI	GATC	3 cut(s)	69, 93, 142
DpnII	GATC	3 cut(s)	67, 91, 140
Eco130I	CCWWGG	1 cut(s)	59
Eco147I	AGGCCT	1 cut(s)	454
Eco31I	GGTCTC	1 cut(s)	143
Eco32I	GATATC	1 cut(s)	580
EcoRV	GATATC	1 cut(s)	580
EcoT14I	CCWWGG	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	6 cut(s)	178, 277, 346, 385, 469, 586
FatI	CATG	6 cut(s)	174, 273, 342, 381, 465, 582
Fnu4HI	GCNGC	2 cut(s)	257, 479
FokI	GGATG	4 cut(s)	233, 359, 421, 602
Fsp4HI	GCNGC	2 cut(s)	257, 479
FspBI	CTAG	2 cut(s)	48, 539
GluI	GCNGC	2 cut(s)	257, 479
HaeIII	GGCC	2 cut(s)	35, 454
Hin1II	CATG	6 cut(s)	178, 277, 346, 385, 469, 586
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	2 cut(s)	325, 542
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	3 cut(s)	77, 426, 577
Hpy188III	TCNNGA	7 cut(s)	11, 89, 98, 144, 466, 539, 583
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	4 cut(s)	82, 444, 493, 580
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	3 cut(s)	259, 478, 602
HpyF3I	CTNAG	2 cut(s)	456, 574
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	6 cut(s)	178, 277, 346, 385, 469, 586
Kzo9I	GATC	3 cut(s)	67, 91, 140
LmnI	GCTCC	1 cut(s)	505
LpnPI	CCDG	8 cut(s)	36, 102, 135, 151, 372, 468, 533, 538
Lsp1109I	GCAGC	2 cut(s)	243, 490
LweI	GCATC	2 cut(s)	211, 611
MaeI	CTAG	2 cut(s)	48, 539
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	2 cut(s)	193, 317
MalI	GATC	3 cut(s)	69, 93, 142
MboI	GATC	3 cut(s)	67, 91, 140
MboII	GAAGA	2 cut(s)	86, 504
MfeI	CAATTG	1 cut(s)	557
MluCI	AATT	5 cut(s)	37, 187, 295, 309, 557
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	4 cut(s)	73, 163, 192, 496
MseI	TTAA	6 cut(s)	210, 495, 530, 552, 570, 613
MspA1I	CMGCKG	1 cut(s)	256
MunI	CAATTG	1 cut(s)	557
Mva1269I	GAATGC	2 cut(s)	508, 595
NdeII	GATC	3 cut(s)	67, 91, 140
NlaIII	CATG	6 cut(s)	178, 277, 346, 385, 469, 586
NmuCI	GTSAC	2 cut(s)	193, 317
PagI	TCATGA	2 cut(s)	465, 582
PceI	AGGCCT	1 cut(s)	454
PctI	GAATGC	2 cut(s)	508, 595
PfeI	GAWTC	2 cut(s)	325, 542
PkrI	GCNGC	2 cut(s)	258, 480
Psp1406I	AACGTT	1 cut(s)	408
PspPI	GGNCC	1 cut(s)	33
PvuII	CAGCTG	1 cut(s)	256
RsaI	GTAC	2 cut(s)	289, 358
RsaNI	GTAC	2 cut(s)	288, 357
SaqAI	TTAA	6 cut(s)	210, 495, 530, 552, 570, 613
SatI	GCNGC	2 cut(s)	257, 479
Sau3AI	GATC	3 cut(s)	67, 91, 140
Sau96I	GGNCC	1 cut(s)	33
SetI	ASST	6 cut(s)	155, 174, 258, 340, 411, 433
SfaNI	GCATC	2 cut(s)	211, 611
Sse9I	AATT	5 cut(s)	37, 187, 295, 309, 557
SseBI	AGGCCT	1 cut(s)	454
SspMI	CTAG	2 cut(s)	48, 539
StuI	AGGCCT	1 cut(s)	454
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	1 cut(s)	334
TasI	AATT	5 cut(s)	37, 187, 295, 309, 557
TatI	WGTACW	1 cut(s)	287
TfiI	GAWTC	2 cut(s)	325, 542
Tru1I	TTAA	6 cut(s)	210, 495, 530, 552, 570, 613
Tru9I	TTAA	6 cut(s)	210, 495, 530, 552, 570, 613
TscAI	CASTG	2 cut(s)	198, 480
TseFI	GTSAC	2 cut(s)	193, 317
TseI	GCWGC	2 cut(s)	256, 478
Tsp45I	GTSAC	2 cut(s)	193, 317
TspDTI	ATGAA	4 cut(s)	423, 482, 504, 599
TspRI	CASTG	2 cut(s)	198, 480
XapI	RAATTY	3 cut(s)	187, 295, 309
XbaI	TCTAGA	1 cut(s)	538
XspI	CTAG	2 cut(s)	48, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.