Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001632

Physical Location & Seq

Genomic Coordinates Reverse (-)

36814023 .. 36817824

Gene Structure 3802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG324400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGCGGGTTAATCTCTCCTTGGTTGAGGACTGGGATCCGGACAATTGGGTATGCGAATCATGTGAACAGGACAATGGGATGCTTTCTCCAAACTCTGGTATTAAGGAAGACACATTAGAGTCATCAACTGGTAGAGGCCACTATGATGGCATGCATTCAGCAGGTCCCAGAAATTGTAATGGTTCAGGGTGGCAAGCTCACTCTAAGAAGCAAAAGCCTGTTGGGAATAGAAAAGTTAAGTTCATTACAAATGAAGAAGTCAGGAGGCTATCTTTGGCAAACCCGCCTCAGAAGACTCCTGTTGGGTACAAAACTGTTACTCCAAAGTCTCCTGTTTCCGGGGTTAAAGCAAATCCTAGCTTTATACATTCAGAAATTGCGATGCCTCGTAGCCATTGTAGGCCCCCCAAGATGCAAAGCATTTCAAAGATTAATCAGCAAGCATGTCAAAAATTAAAACATTCACAAGCTTCAAAAAAGAAGTCATCCACAGTTACAACATTGAGGAACTTTTCACCTATAACCAGTACAGGCAAGGGAGGCTTCATCATTCTCGATTCAGAAACACCTGCTCAATTCATTGGTGGATTCCAGGCACAACCTCCCTGTACTGTACATAATAAAGCCTATGAATCAAGAGAGACCTATGCTTTGCTGTTAGAGATCATGGATACCCAAAATTCAGTGACAAGGATTTACTTTAATGGAGTGGATGCTGTGGATTTGTTGATATTTACATCTAAACAGCTGCATTTGGAGAATACCATGACAAGTCCAAGTACAGAAAATTCCTTATGGAGAATTTTTGGTGACAATAAGAATTATTGTCGAGCTGACATGGATGACAATGGTACTACTGTTGATATGGAAGTTGACATGGCAGGTGGAAAGATGTTGGGAAACGTTGATATAGTCGTTCCGAAAGGTTCATCCACCCCTTGTAGAAGGCCTGAGACTATCATGAAAGCAGTGCAGCAACTTTTGACTATTAAGAAGGAGGAGCATTCTTCATACCAGACCAGATTAAGAGTTCTAGATTCTACTATTAAACAATTGTTGGCATTTAACTCAGATATCATCATGGATGAGCATTCTGCATCATTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

369

Amino Acids

40.94

Weight (kDa)

8.67

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61090 AT5G61090 AT5G61120 AT5G61120 AT5G61120
fragaria_vesca	FvH4_4g13540 FvH4_4g13550 FvH4_5g13930 FvH4_5g13940 FvH4_5g13940 FvH4_5g13940
malus_domestica	MD06G1202200.v1.1 MD14G1211300.v1.1
prunus_persica	Prupe.5G204200_v2.0.a1 Prupe.5G204200_v2.0.a1 Prupe.5G204400_v2.0.a1
pyrus_communis	pycom06g17820
rosa_chinensis	RchiOBHm_Chr4g0414551 RchiOBHm_Chr4g0414561 RchiOBHm_Chr4g0414571 RchiOBHm_Chr7g0183021
rosa_laevigata	RLG00000005087
rosa_multiflora	Rmu_co8299331.1_g000001 Rmu_sc0000808.1_g000022 Rmu_sc0001063.1_g000013 Rmu_sc0005196.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240320 Rroxscaffold_3G00240450 Rroxscaffold_3G00270840
rosa_rugosa	Rorug06G0451800
rosa_samantha	Rh4AG186600 Rh4AG186700 Rh4BG173800 Rh4BG184200 Rh4CG197200 Rh4CG197500 Rh4DG181800 Rh4DG181900 Rh4DG183300 Rh7AG055300 Rh7AG324400 Rh7BG054700 Rh7BG309400 Rh7CG056000 Rh7CG341300 Rh7DG054800
rosa_wichuraiana	Rw4G015750 Rw7G027480 Rw7G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	577, 872
Acc36I	ACCTGC	3 cut(s)	152, 577, 872
AccB7I	CCANNNNNTGG	1 cut(s)	95
AccIII	TCCGGA	1 cut(s)	37
AciI	CCGC	2 cut(s)	4, 284
AclI	AACGTT	1 cut(s)	903
AclWI	GGATC	2 cut(s)	29, 42
AcsI	RAATTY	3 cut(s)	679, 787, 801
AfaI	GTAC	6 cut(s)	308, 529, 610, 615, 781, 853
AfiI	CCNNNNNNNGG	2 cut(s)	95, 338
AgsI	TTSAA	2 cut(s)	426, 474
AjnI	CCWGG	1 cut(s)	591
AluBI	AGCT	5 cut(s)	197, 360, 470, 748, 833
AluI	AGCT	5 cut(s)	197, 360, 470, 748, 833
Alw26I	GTCTC	3 cut(s)	333, 635, 947
AlwI	GGATC	2 cut(s)	29, 42
Aor13HI	TCCGGA	1 cut(s)	37
AoxI	GGCC	3 cut(s)	136, 401, 947
ApeKI	GCWGC	2 cut(s)	748, 973
ApoI	RAATTY	3 cut(s)	679, 787, 801
ArsI	GACNNNNNNTTYG	4 cut(s)	467, 499, 634, 666
AseI	ATTAAT	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	164, 402
AsuC2I	CCSGG	1 cut(s)	340
AsuHPI	GGTGA	2 cut(s)	507, 821
AvaII	GGWCC	1 cut(s)	164
BaeI	ACNNNNGTAYC	2 cut(s)	843, 876
BamHI	GGATCC	1 cut(s)	34
BbsI	GAAGAC	2 cut(s)	114, 299
BbvI	GCAGC	2 cut(s)	735, 985
BccI	CCATC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	593
BciVI	GTATCC	1 cut(s)	664
BcnI	CCSGG	1 cut(s)	340
BcoDI	GTCTC	3 cut(s)	333, 635, 947
BfaI	CTAG	2 cut(s)	357, 1034
BfuAI	ACCTGC	3 cut(s)	152, 577, 872
BfuI	GTATCC	1 cut(s)	664
BisI	GCNGC	2 cut(s)	749, 974
BlsI	GCNGC	2 cut(s)	750, 975
Bme1390I	CCNGG	2 cut(s)	340, 593
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	2 cut(s)	164, 402
BmiI	GGNNCC	3 cut(s)	36, 166, 404
BmrFI	CCNGG	2 cut(s)	340, 593
BmrI	ACTGGG	1 cut(s)	40
BmsI	GCATC	5 cut(s)	69, 372, 402, 703, 1106
BmuI	ACTGGG	1 cut(s)	40
BpiI	GAAGAC	2 cut(s)	114, 299
BpuMI	CCSGG	1 cut(s)	340
BsaI	GGTCTC	1 cut(s)	635
BsaJI	CCNNGG	2 cut(s)	18, 339
BsaWI	WCCGGW	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 338
Bse1I	ACTGG	3 cut(s)	35, 133, 525
BseAI	TCCGGA	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	593
BseDI	CCNNGG	2 cut(s)	18, 339
BseGI	GGATG	6 cut(s)	84, 485, 718, 847, 929, 1090
BseLI	CCNNNNNNNGG	2 cut(s)	95, 338
BseMII	CTCAG	3 cut(s)	302, 942, 1083
BseNI	ACTGG	3 cut(s)	35, 133, 525
BseRI	GAGGAG	1 cut(s)	1013
BseXI	GCAGC	2 cut(s)	735, 985
BsgI	GTGCAG	1 cut(s)	992
BshFI	GGCC	3 cut(s)	138, 403, 949
BsiSI	CCGG	2 cut(s)	38, 339
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	2 cut(s)	95, 338
BsmAI	GTCTC	3 cut(s)	333, 635, 947
BsmFI	GGGAC	1 cut(s)	150
BsmI	GAATGC	3 cut(s)	154, 1003, 1090
BsnI	GGCC	3 cut(s)	138, 403, 949
Bso31I	GGTCTC	1 cut(s)	635
Bsp13I	TCCGGA	1 cut(s)	37
Bsp1407I	TGTACA	1 cut(s)	613
Bsp143I	GATC	2 cut(s)	34, 663
BspACI	CCGC	2 cut(s)	4, 284
BspANI	GGCC	3 cut(s)	138, 403, 949
BspCNI	CTCAG	3 cut(s)	301, 943, 1082
BspEI	TCCGGA	1 cut(s)	37
BspHI	TCATGA	1 cut(s)	960
BspLI	GGNNCC	3 cut(s)	36, 166, 404
BspMI	ACCTGC	3 cut(s)	152, 577, 872
BspPI	GGATC	2 cut(s)	29, 42
BspTNI	GGTCTC	1 cut(s)	635
BsrGI	TGTACA	1 cut(s)	613
BsrI	ACTGG	3 cut(s)	35, 133, 525
BssECI	CCNNGG	2 cut(s)	18, 339
BssMI	GATC	2 cut(s)	34, 663
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	4 cut(s)	316, 493, 613, 859
BstAUI	TGTACA	1 cut(s)	613
BstC8I	GCNNGC	3 cut(s)	152, 195, 441
BstDEI	CTNAG	4 cut(s)	204, 288, 951, 1069
BstF5I	GGATG	6 cut(s)	84, 485, 718, 847, 929, 1090
BstKTI	GATC	2 cut(s)	37, 666
BstMAI	GTCTC	3 cut(s)	333, 635, 947
BstMBI	GATC	2 cut(s)	34, 663
BstMWI	GCNNNNNNNGC	1 cut(s)	540
BstNI	CCWGG	1 cut(s)	593
BstNSI	RCATGY	2 cut(s)	154, 447
BstSCI	CCNGG	2 cut(s)	338, 591
BstV1I	GCAGC	2 cut(s)	735, 985
BstV2I	GAAGAC	2 cut(s)	114, 299
BstX2I	RGATCY	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	34
BsuI	GTATCC	1 cut(s)	664
BsuRI	GGCC	3 cut(s)	138, 403, 949
BtgZI	GCGATG	1 cut(s)	395
BtsCI	GGATG	6 cut(s)	84, 485, 718, 847, 929, 1090
BtsI	GCAGTG	1 cut(s)	975
BtsIMutI	CAGTG	2 cut(s)	690, 975
BveI	ACCTGC	3 cut(s)	152, 577, 872
Cac8I	GCNNGC	3 cut(s)	152, 195, 441
CciI	TCATGA	1 cut(s)	960
Cfr13I	GGNCC	2 cut(s)	164, 402
Csp6I	GTAC	6 cut(s)	307, 528, 609, 614, 780, 852
CviAII	CATG	9 cut(s)	60, 151, 444, 667, 766, 838, 877, 961, 1081
CviQI	GTAC	6 cut(s)	307, 528, 609, 614, 780, 852
DdeI	CTNAG	4 cut(s)	204, 288, 951, 1069
DpnI	GATC	2 cut(s)	36, 665
DpnII	GATC	2 cut(s)	34, 663
Eco130I	CCWWGG	1 cut(s)	18
Eco147I	AGGCCT	1 cut(s)	949
Eco31I	GGTCTC	1 cut(s)	635
Eco32I	GATATC	1 cut(s)	1075
Eco47I	GGWCC	1 cut(s)	164
EcoO109I	RGGNCCY	2 cut(s)	164, 402
EcoRII	CCWGG	1 cut(s)	591
EcoRV	GATATC	1 cut(s)	1075
EcoT14I	CCWWGG	1 cut(s)	18
EcoT22I	ATGCAT	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	9 cut(s)	63, 154, 447, 670, 769, 841, 880, 964, 1084
FalI	AAGNNNNNCTT	2 cut(s)	527, 559
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	9 cut(s)	59, 150, 443, 666, 765, 837, 876, 960, 1080
FauI	CCCGC	1 cut(s)	291
Fnu4HI	GCNGC	2 cut(s)	749, 974
FokI	GGATG	6 cut(s)	91, 472, 725, 854, 916, 1097
Fsp4HI	GCNGC	2 cut(s)	749, 974
FspBI	CTAG	2 cut(s)	357, 1034
GluI	GCNGC	2 cut(s)	749, 974
HaeIII	GGCC	3 cut(s)	138, 403, 949
HapII	CCGG	2 cut(s)	38, 339
Hin1II	CATG	9 cut(s)	63, 154, 447, 670, 769, 841, 880, 964, 1084
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	7 cut(s)	56, 119, 295, 557, 588, 632, 1037
HpaII	CCGG	2 cut(s)	38, 339
HphI	GGTGA	2 cut(s)	507, 821
Hpy166II	GTNNAC	2 cut(s)	65, 874
Hpy188I	TCNGA	5 cut(s)	291, 373, 562, 921, 1072
Hpy188III	TCNNGA	6 cut(s)	38, 262, 554, 636, 961, 1034
Hpy8I	GTNNAC	2 cut(s)	65, 874
HpyAV	CCTTC	2 cut(s)	939, 988
HpyCH4III	ACNGT	4 cut(s)	316, 493, 613, 859
HpyCH4IV	ACGT	1 cut(s)	903
HpyCH4V	TGCA	5 cut(s)	154, 415, 751, 973, 1097
HpyF10VI	GCNNNNNNNGC	1 cut(s)	540
HpyF3I	CTNAG	4 cut(s)	204, 288, 951, 1069
HpySE526I	ACGT	1 cut(s)	903
Hsp92II	CATG	9 cut(s)	63, 154, 447, 670, 769, 841, 880, 964, 1084
Kpn2I	TCCGGA	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	34, 663
LmnI	GCTCC	1 cut(s)	1000
Lsp1109I	GCAGC	2 cut(s)	735, 985
LweI	GCATC	5 cut(s)	69, 372, 402, 703, 1106
MaeI	CTAG	2 cut(s)	357, 1034
MaeII	ACGT	1 cut(s)	903
MaeIII	GTNAC	4 cut(s)	316, 493, 685, 809
MalI	GATC	2 cut(s)	36, 665
MboI	GATC	2 cut(s)	34, 663
MboII	GAAGA	4 cut(s)	119, 266, 304, 999
MfeI	CAATTG	2 cut(s)	43, 1052
MflI	RGATCY	1 cut(s)	34
MlyI	GAGTC	2 cut(s)	128, 289
MnlI	CCTC	9 cut(s)	19, 128, 258, 297, 396, 498, 533, 612, 991
Mph1103I	ATGCAT	1 cut(s)	156
MroI	TCCGGA	1 cut(s)	37
MslI	CAYNNNNRTG	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	748
MspI	CCGG	2 cut(s)	38, 339
MspR9I	CCNGG	2 cut(s)	340, 593
MunI	CAATTG	2 cut(s)	43, 1052
Mva1269I	GAATGC	3 cut(s)	154, 1003, 1090
MvaI	CCWGG	1 cut(s)	593
MwoI	GCNNNNNNNGC	1 cut(s)	540
NciI	CCSGG	1 cut(s)	340
NdeII	GATC	2 cut(s)	34, 663
NlaIII	CATG	9 cut(s)	63, 154, 447, 670, 769, 841, 880, 964, 1084
NlaIV	GGNNCC	3 cut(s)	36, 166, 404
NmuCI	GTSAC	2 cut(s)	685, 809
NsiI	ATGCAT	1 cut(s)	156
NspI	RCATGY	2 cut(s)	154, 447
PaeI	GCATGC	1 cut(s)	154
PagI	TCATGA	1 cut(s)	960
PaqCI	CACCTGC	2 cut(s)	577, 872
PceI	AGGCCT	1 cut(s)	949
PctI	GAATGC	3 cut(s)	154, 1003, 1090
PfeI	GAWTC	5 cut(s)	56, 557, 588, 632, 1037
PflMI	CCANNNNNTGG	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	750, 975
PleI	GAGTC	2 cut(s)	127, 289
PpsI	GAGTC	2 cut(s)	127, 289
PpuMI	RGGWCCY	1 cut(s)	164
PshBI	ATTAAT	1 cut(s)	432
Psp1406I	AACGTT	1 cut(s)	903
Psp5II	RGGWCCY	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	591
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	3 cut(s)	36, 166, 404
PspPI	GGNCC	2 cut(s)	164, 402
PspPPI	RGGWCCY	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	34
PvuII	CAGCTG	1 cut(s)	748
RsaI	GTAC	6 cut(s)	308, 529, 610, 615, 781, 853
RsaNI	GTAC	6 cut(s)	307, 528, 609, 614, 780, 852
RseI	CAYNNNNRTG	1 cut(s)	144
SatI	GCNGC	2 cut(s)	749, 974
Sau3AI	GATC	2 cut(s)	34, 663
Sau96I	GGNCC	2 cut(s)	164, 402
SchI	GAGTC	2 cut(s)	128, 289
ScrFI	CCNGG	2 cut(s)	340, 593
SfaNI	GCATC	5 cut(s)	69, 372, 402, 703, 1106
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	144
SphI	GCATGC	1 cut(s)	154
SseBI	AGGCCT	1 cut(s)	949
SsiI	CCGC	2 cut(s)	4, 284
SspMI	CTAG	2 cut(s)	357, 1034
StuI	AGGCCT	1 cut(s)	949
StyD4I	CCNGG	2 cut(s)	338, 591
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	4 cut(s)	316, 493, 613, 859
TaiI	ACGT	1 cut(s)	906
TaqI	TCGA	2 cut(s)	555, 829
TatI	WGTACW	4 cut(s)	527, 608, 613, 779
TfiI	GAWTC	5 cut(s)	56, 557, 588, 632, 1037
TscAI	CASTG	2 cut(s)	690, 975
TseFI	GTSAC	2 cut(s)	685, 809
TseI	GCWGC	2 cut(s)	748, 973
Tsp45I	GTSAC	2 cut(s)	685, 809
TspDTI	ATGAA	8 cut(s)	232, 267, 535, 568, 645, 918, 977, 999
TspRI	CASTG	2 cut(s)	690, 975
Van91I	CCANNNNNTGG	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	164
VspI	ATTAAT	1 cut(s)	432
XapI	RAATTY	3 cut(s)	679, 787, 801
XbaI	TCTAGA	1 cut(s)	1033
XceI	RCATGY	2 cut(s)	154, 447
XspI	CTAG	2 cut(s)	357, 1034
Zsp2I	ATGCAT	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.