FvH4_5g13940

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001632
Physical Location & Seq
Reverse (-)
7879413 .. 7883681
4269 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13940.t3

Sequence Viewer

Length: 939 bp
ATGTTTATTTTATTTCTTTACGATGTATGTACCTCAACTTTTCAGGACAAACCCTGTGATATATGTGGTGGATATACTGATCGAGGCATTGCTCACGAAGAACTGATTGTAACCTGCTGTAAATGCAGAATAAATCGTGAACATCTCTATTGCATGCGGGTTCATCATTCCTTGCTATTTAAGGATTGGGGCCAATGGGTTTGCGAGTCATGTTTACCAAGCAATGTATTAGTCACACCACCATCATCAAGCCATTCTTTGAGTTCCCATGGAGATAAAGATCCCGCACTGGCTGATAACTCTGAACAAAACTATAGAGATGATGAAGAAAGAGAACTACTGATGGATATATTCCGTGGTGTTCAGTATCATTCATATCTTCCAGGTCCCCAAGTTACTTGGAAGGGAGGCTTTACCATTCTTGACGCAGATCAATTCATTGATGGGTTCCAGGCATATCCTCCCCTAAGGGCTCTTCATAGAACCTATCAAGTTTCACGAAAAATGCCTCCTGTTCTTCAGGCTAATTTGCTTCCCCGATTGGAGCTTTGGCTTGATCTCTTCCAAGATGAATGCCTTTGTGATCCCAAAGACGTTGCACTATACTTTTTCCCTGATGATAACAGTGCCAGATCAAGAGAGAGCCAAGATTGGCTCTTTGAAGCCATGGATACCCAAAACTCAGTGTTGAGAGTTTGCTTTGGTGGTGTGGAGGCCATGGATGTCGTGGAGTTGTTGATATTTACATCTAAGCATCTACACTTGGACTCATCAGAGACTGAAAATTTTAAGCTAGGAGACTTCTTATGGGGAATATTTCGTGATAAAGATGATCGTCAAGCAGACATGGAAGACACTGGGAGTTGTACCGTGGATGAAGTAGACATGGTAGGTGGAAAGATGGTGGGAATGGCCGATGTAGTAGTTTCAAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

313

Amino Acids

35.67

Weight (kDa)

4.64

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 134 - 273 1.4e-30 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 122
AccI GTMKAC 1 cut(s) 882
AciI CCGC 2 cut(s) 157, 285
AclWI GGATC 2 cut(s) 275, 578
AcoI YGGCCR 1 cut(s) 912
AcsI RAATTY 1 cut(s) 784
AcuI CTGAAG 1 cut(s) 503
AfaI GTAC 2 cut(s) 31, 868
AgsI TTSAA 2 cut(s) 662, 930
AjnI CCWGG 2 cut(s) 382, 450
AluBI AGCT 2 cut(s) 547, 793
AluI AGCT 2 cut(s) 547, 793
Alw26I GTCTC 2 cut(s) 770, 792
AlwI GGATC 2 cut(s) 275, 578
AlwNI CAGNNNCTG 1 cut(s) 779
AoxI GGCC 3 cut(s) 190, 714, 912
ApoI RAATTY 1 cut(s) 784
AspS9I GGNCC 2 cut(s) 190, 386
AvaII GGWCC 1 cut(s) 386
AxyI CCTNAGG 1 cut(s) 467
BanII GRGCYC 1 cut(s) 475
BbsI GAAGAC 1 cut(s) 858
BccI CCATC 4 cut(s) 250, 337, 437, 895
BciT130I CCWGG 2 cut(s) 384, 452
BciVI GTATCC 1 cut(s) 664
BcoDI GTCTC 2 cut(s) 770, 792
BfaI CTAG 1 cut(s) 794
BfmI CTRYAG 1 cut(s) 313
BfuAI ACCTGC 1 cut(s) 122
BfuI GTATCC 1 cut(s) 664
Bme1390I CCNGG 2 cut(s) 384, 452
Bme18I GGWCC 1 cut(s) 386
BmgT120I GGNCC 2 cut(s) 190, 386
BmiI GGNNCC 3 cut(s) 191, 388, 449
BmrFI CCNGG 2 cut(s) 384, 452
BmrI ACTGGG 1 cut(s) 867
BmsI GCATC 1 cut(s) 763
BmuI ACTGGG 1 cut(s) 867
BpiI GAAGAC 1 cut(s) 858
BsaBI GATNNNNATC 1 cut(s) 279
BsaJI CCNNGG 5 cut(s) 268, 355, 666, 717, 870
Bse1I ACTGG 2 cut(s) 294, 862
Bse21I CCTNAGG 1 cut(s) 467
Bse3DI GCAATG 2 cut(s) 87, 229
Bse8I GATNNNNATC 1 cut(s) 279
BseBI CCWGG 2 cut(s) 384, 452
BseDI CCNNGG 5 cut(s) 268, 355, 666, 717, 870
BseGI GGATG 2 cut(s) 727, 880
BseJI GATNNNNATC 1 cut(s) 279
BseMI GCAATG 2 cut(s) 87, 229
BseMII CTCAG 1 cut(s) 696
BseNI ACTGG 2 cut(s) 294, 862
BshFI GGCC 3 cut(s) 192, 716, 914
BslFI GGGAC 1 cut(s) 372
BsmAI GTCTC 2 cut(s) 770, 792
BsmFI GGGAC 1 cut(s) 372
BsmI GAATGC 1 cut(s) 578
BsnI GGCC 3 cut(s) 192, 716, 914
Bsp1286I GDGCHC 1 cut(s) 475
Bsp143I GATC 7 cut(s) 79, 280, 430, 556, 583, 632, 832
Bsp19I CCATGG 3 cut(s) 268, 666, 717
BspACI CCGC 2 cut(s) 157, 285
BspANI GGCC 3 cut(s) 192, 716, 914
BspCNI CTCAG 1 cut(s) 695
BspLI GGNNCC 3 cut(s) 191, 388, 449
BspMI ACCTGC 1 cut(s) 122
BspPI GGATC 2 cut(s) 275, 578
BspQI GCTCTTC 1 cut(s) 480
BsrDI GCAATG 2 cut(s) 87, 229
BsrI ACTGG 2 cut(s) 294, 862
BssECI CCNNGG 5 cut(s) 268, 355, 666, 717, 870
BssMI GATC 7 cut(s) 79, 280, 430, 556, 583, 632, 832
BssT1I CCWWGG 3 cut(s) 268, 666, 717
Bst2UI CCWGG 2 cut(s) 384, 452
Bst4CI ACNGT 2 cut(s) 626, 871
Bst6I CTCTTC 2 cut(s) 480, 566
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 3 cut(s) 467, 682, 750
BstDSI CCRYGG 5 cut(s) 268, 355, 666, 717, 870
BstF5I GGATG 2 cut(s) 727, 880
BstKTI GATC 7 cut(s) 82, 283, 433, 559, 586, 635, 835
BstMAI GTCTC 2 cut(s) 770, 792
BstMBI GATC 7 cut(s) 79, 280, 430, 556, 583, 632, 832
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNI CCWGG 2 cut(s) 384, 452
BstNSI RCATGY 1 cut(s) 157
BstSCI CCNGG 2 cut(s) 382, 450
BstSFI CTRYAG 1 cut(s) 313
BstV2I GAAGAC 1 cut(s) 858
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
Bsu36I CCTNAGG 1 cut(s) 467
BsuI GTATCC 1 cut(s) 664
BsuRI GGCC 3 cut(s) 192, 716, 914
BtgI CCRYGG 5 cut(s) 268, 355, 666, 717, 870
BtsCI GGATG 2 cut(s) 727, 880
BtsIMutI CAGTG 4 cut(s) 287, 631, 690, 855
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 1 cut(s) 155
CaiI CAGNNNCTG 1 cut(s) 779
Cfr13I GGNCC 2 cut(s) 190, 386
CseI GACGC 1 cut(s) 434
Csp6I GTAC 2 cut(s) 30, 867
CviAII CATG 7 cut(s) 154, 210, 269, 667, 718, 847, 886
CviQI GTAC 2 cut(s) 30, 867
DdeI CTNAG 3 cut(s) 467, 682, 750
DpnI GATC 7 cut(s) 81, 282, 432, 558, 585, 634, 834
DpnII GATC 7 cut(s) 79, 280, 430, 556, 583, 632, 832
EaeI YGGCCR 1 cut(s) 912
Eam1104I CTCTTC 2 cut(s) 480, 566
EarI CTCTTC 2 cut(s) 480, 566
Eco130I CCWWGG 3 cut(s) 268, 666, 717
Eco24I GRGCYC 1 cut(s) 475
Eco47I GGWCC 1 cut(s) 386
Eco57I CTGAAG 1 cut(s) 503
Eco81I CCTNAGG 1 cut(s) 467
EcoO109I RGGNCCY 1 cut(s) 386
EcoRII CCWGG 2 cut(s) 382, 450
EcoT14I CCWWGG 3 cut(s) 268, 666, 717
EcoT38I GRGCYC 1 cut(s) 475
ErhI CCWWGG 3 cut(s) 268, 666, 717
FaeI CATG 7 cut(s) 157, 213, 272, 670, 721, 850, 889
FalI AAGNNNNNCTT 4 cut(s) 241, 273, 395, 427
FaqI GGGAC 1 cut(s) 372
FatI CATG 7 cut(s) 153, 209, 268, 666, 717, 846, 885
FauI CCCGC 2 cut(s) 150, 292
FblI GTMKAC 1 cut(s) 882
FokI GGATG 2 cut(s) 734, 887
FriOI GRGCYC 1 cut(s) 475
FspBI CTAG 1 cut(s) 794
HaeIII GGCC 3 cut(s) 192, 716, 914
HgaI GACGC 1 cut(s) 434
Hin1II CATG 7 cut(s) 157, 213, 272, 670, 721, 850, 889
HinfI GANTC 2 cut(s) 206, 767
Hpy166II GTNNAC 3 cut(s) 140, 215, 883
Hpy188I TCNGA 2 cut(s) 304, 775
Hpy188III TCNNGA 7 cut(s) 44, 95, 137, 422, 498, 636, 821
Hpy8I GTNNAC 3 cut(s) 140, 215, 883
HpyAV CCTTC 1 cut(s) 397
HpyCH4III ACNGT 2 cut(s) 626, 871
HpyCH4IV ACGT 1 cut(s) 594
HpyCH4V TGCA 3 cut(s) 126, 153, 599
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 3 cut(s) 467, 682, 750
HpySE526I ACGT 1 cut(s) 594
Hsp92II CATG 7 cut(s) 157, 213, 272, 670, 721, 850, 889
Kzo9I GATC 7 cut(s) 79, 280, 430, 556, 583, 632, 832
LguI GCTCTTC 1 cut(s) 480
LmnI GCTCC 1 cut(s) 544
LweI GCATC 1 cut(s) 763
MaeI CTAG 1 cut(s) 794
MaeII ACGT 1 cut(s) 594
MaeIII GTNAC 3 cut(s) 109, 232, 394
MalI GATC 7 cut(s) 81, 282, 432, 558, 585, 634, 834
MboI GATC 7 cut(s) 79, 280, 430, 556, 583, 632, 832
MboII GAAGA 7 cut(s) 110, 338, 371, 467, 509, 553, 863
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 475
MluCI AATT 3 cut(s) 434, 526, 784
MlyI GAGTC 2 cut(s) 215, 761
MnlI CCTC 6 cut(s) 43, 77, 401, 471, 519, 706
MseI TTAA 2 cut(s) 180, 789
MspR9I CCNGG 2 cut(s) 384, 452
Mva1269I GAATGC 1 cut(s) 578
MvaI CCWGG 2 cut(s) 384, 452
MwoI GCNNNNNNNGC 1 cut(s) 123
NcoI CCATGG 3 cut(s) 268, 666, 717
NdeII GATC 7 cut(s) 79, 280, 430, 556, 583, 632, 832
NlaIII CATG 7 cut(s) 157, 213, 272, 670, 721, 850, 889
NlaIV GGNNCC 3 cut(s) 191, 388, 449
NmuCI GTSAC 1 cut(s) 232
NspI RCATGY 1 cut(s) 157
PaeI GCATGC 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 480
PctI GAATGC 1 cut(s) 578
PleI GAGTC 2 cut(s) 214, 761
PpsI GAGTC 2 cut(s) 214, 761
PpuMI RGGWCCY 1 cut(s) 386
Psp5II RGGWCCY 1 cut(s) 386
Psp6I CCWGG 2 cut(s) 382, 450
PspGI CCWGG 2 cut(s) 382, 450
PspN4I GGNNCC 3 cut(s) 191, 388, 449
PspPI GGNCC 2 cut(s) 190, 386
PspPPI RGGWCCY 1 cut(s) 386
PstNI CAGNNNCTG 1 cut(s) 779
PsuI RGATCY 1 cut(s) 280
RsaI GTAC 2 cut(s) 31, 868
RsaNI GTAC 2 cut(s) 30, 867
SapI GCTCTTC 1 cut(s) 480
SaqAI TTAA 2 cut(s) 180, 789
Sau3AI GATC 7 cut(s) 79, 280, 430, 556, 583, 632, 832
Sau96I GGNCC 2 cut(s) 190, 386
SchI GAGTC 2 cut(s) 215, 761
ScrFI CCNGG 2 cut(s) 384, 452
SduI GDGCHC 1 cut(s) 475
SetI ASST 8 cut(s) 35, 116, 388, 488, 549, 597, 795, 895
SfaNI GCATC 1 cut(s) 763
SfcI CTRYAG 1 cut(s) 313
SinI GGWCC 1 cut(s) 386
SphI GCATGC 1 cut(s) 157
Sse9I AATT 3 cut(s) 434, 526, 784
SsiI CCGC 2 cut(s) 157, 285
SspI AATATT 1 cut(s) 816
SspMI CTAG 1 cut(s) 794
StyD4I CCNGG 2 cut(s) 382, 450
StyI CCWWGG 3 cut(s) 268, 666, 717
TaaI ACNGT 2 cut(s) 626, 871
TaiI ACGT 1 cut(s) 597
TaqI TCGA 1 cut(s) 82
TasI AATT 3 cut(s) 434, 526, 784
Tru1I TTAA 2 cut(s) 180, 789
Tru9I TTAA 2 cut(s) 180, 789
TscAI CASTG 4 cut(s) 294, 631, 690, 862
TseFI GTSAC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 7 cut(s) 152, 339, 363, 427, 467, 585, 891
TspGWI ACGGA 1 cut(s) 344
TspRI CASTG 4 cut(s) 294, 631, 690, 862
VpaK11BI GGWCC 1 cut(s) 386
XapI RAATTY 1 cut(s) 784
XceI RCATGY 1 cut(s) 157
XcmI CCANNNNNNNNNTGG 1 cut(s) 724
XmiI GTMKAC 1 cut(s) 882
XspI CTAG 1 cut(s) 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.