Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000808.1

Orthogroup ID

OG0001632

Physical Location & Seq

Genomic Coordinates Forward (+)

94122 .. 94637

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000808.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgttagtattcattcttctaattttcagttattgcatgcgggttaatccctccttggttgaggactgggatccggacaattgggtctgcgaatcatctgaacagggcaatgagatgctttctccaaactctagtattaaggaagatacattaaagtcatcaactggtagaggccactatgatggcatgcattcagcagatcccagcagaaattgtaatggttcagggtggcaagctcactccaagaggcaaaagcttattgtgaatggaaaagttaagttcattacaaatgaagaagtcaggaggctatatttggcagacccgcctcagaagactcctgttgggtacaaaactattactccaaagtttcctgtttccggggttaaagcaaatcctagctttatacattcagaaattgcgatgcctcgtagacatggtaggccccccaagatgcaaagcatctcaaagattaatcagcaagctagcatgtcaaaatttaaaacattcacaaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

171

Amino Acids

19.36

Weight (kDa)

9.65

Isoelectric Point (pI)

56.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61090 AT5G61090 AT5G61120 AT5G61120 AT5G61120
fragaria_vesca	FvH4_4g13540 FvH4_4g13550 FvH4_5g13930 FvH4_5g13940 FvH4_5g13940 FvH4_5g13940
malus_domestica	MD06G1202200.v1.1 MD14G1211300.v1.1
prunus_persica	Prupe.5G204200_v2.0.a1 Prupe.5G204200_v2.0.a1 Prupe.5G204400_v2.0.a1
pyrus_communis	pycom06g17820
rosa_chinensis	RchiOBHm_Chr4g0414551 RchiOBHm_Chr4g0414561 RchiOBHm_Chr4g0414571 RchiOBHm_Chr7g0183021
rosa_laevigata	RLG00000005087
rosa_multiflora	Rmu_co8299331.1_g000001 Rmu_sc0000808.1_g000022 Rmu_sc0001063.1_g000013 Rmu_sc0005196.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240320 Rroxscaffold_3G00240450 Rroxscaffold_3G00270840
rosa_rugosa	Rorug06G0451800
rosa_samantha	Rh4AG186600 Rh4AG186700 Rh4BG173800 Rh4BG184200 Rh4CG197200 Rh4CG197500 Rh4DG181800 Rh4DG181900 Rh4DG183300 Rh7AG055300 Rh7AG324400 Rh7BG054700 Rh7BG309400 Rh7CG056000 Rh7CG341300 Rh7DG054800
rosa_wichuraiana	Rw4G015750 Rw7G027480 Rw7G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AccI	GTMKAC	1 cut(s)	430
AccIII	TCCGGA	1 cut(s)	73
AciI	CCGC	2 cut(s)	40, 323
AclWI	GGATC	3 cut(s)	65, 78, 194
AcsI	RAATTY	1 cut(s)	494
AdeI	CACNNNGTG	1 cut(s)	513
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	377
AluBI	AGCT	4 cut(s)	236, 256, 399, 482
AluI	AGCT	4 cut(s)	236, 256, 399, 482
AlwI	GGATC	3 cut(s)	65, 78, 194
Aor13HI	TCCGGA	1 cut(s)	73
AoxI	GGCC	2 cut(s)	172, 440
ApoI	RAATTY	1 cut(s)	494
AseI	ATTAAT	1 cut(s)	471
AspS9I	GGNCC	1 cut(s)	441
AsuC2I	CCSGG	1 cut(s)	379
AsuNHI	GCTAGC	1 cut(s)	482
BamHI	GGATCC	1 cut(s)	70
BarI	GAAGNNNNNNTAC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	338
BccI	CCATC	1 cut(s)	176
BcnI	CCSGG	1 cut(s)	379
BfaI	CTAG	3 cut(s)	132, 396, 483
Bme1390I	CCNGG	1 cut(s)	379
BmgT120I	GGNCC	1 cut(s)	441
BmiI	GGNNCC	2 cut(s)	72, 443
BmrFI	CCNGG	1 cut(s)	379
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	4 cut(s)	105, 411, 441, 468
BmtI	GCTAGC	1 cut(s)	486
BmuI	ACTGGG	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	338
BpuMI	CCSGG	1 cut(s)	379
BsaJI	CCNNGG	2 cut(s)	54, 378
BsaWI	WCCGGW	1 cut(s)	73
BsaXI	ACNNNNNCTCC	2 cut(s)	343, 373
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse1I	ACTGG	2 cut(s)	71, 169
Bse3DI	GCAATG	1 cut(s)	115
BseAI	TCCGGA	1 cut(s)	73
BseDI	CCNNGG	2 cut(s)	54, 378
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	2 cut(s)	71, 169
BseYI	CCCAGC	1 cut(s)	203
BshFI	GGCC	2 cut(s)	174, 442
BsiSI	CCGG	2 cut(s)	74, 378
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	2 cut(s)	174, 442
Bsp13I	TCCGGA	1 cut(s)	73
Bsp143I	GATC	2 cut(s)	70, 199
BspACI	CCGC	2 cut(s)	40, 323
BspANI	GGCC	2 cut(s)	174, 442
BspCNI	CTCAG	1 cut(s)	340
BspEI	TCCGGA	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	72, 443
BspOI	GCTAGC	1 cut(s)	486
BspPI	GGATC	3 cut(s)	65, 78, 194
BsrDI	GCAATG	1 cut(s)	115
BsrI	ACTGG	2 cut(s)	71, 169
BssECI	CCNNGG	2 cut(s)	54, 378
BssMI	GATC	2 cut(s)	70, 199
BssT1I	CCWWGG	1 cut(s)	54
BstC8I	GCNNGC	5 cut(s)	38, 188, 234, 480, 484
BstDEI	CTNAG	1 cut(s)	327
BstKTI	GATC	2 cut(s)	73, 202
BstMBI	GATC	2 cut(s)	70, 199
BstNSI	RCATGY	3 cut(s)	40, 190, 490
BstSCI	CCNGG	1 cut(s)	377
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	2 cut(s)	70, 199
BstXI	CCANNNNNNTGG	1 cut(s)	182
BstYI	RGATCY	2 cut(s)	70, 199
BsuRI	GGCC	2 cut(s)	174, 442
BtgZI	GCGATG	1 cut(s)	434
Cac8I	GCNNGC	5 cut(s)	38, 188, 234, 480, 484
Cfr13I	GGNCC	1 cut(s)	441
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	4 cut(s)	37, 187, 434, 487
CviJI	RGCY	7 cut(s)	174, 236, 256, 307, 399, 442, 482
CviKI_1	RGCY	7 cut(s)	174, 236, 256, 307, 399, 442, 482
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	2 cut(s)	72, 201
DpnII	GATC	2 cut(s)	70, 199
DraI	TTTAAA	1 cut(s)	499
DraIII	CACNNNGTG	1 cut(s)	513
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	54
EcoT22I	ATGCAT	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	4 cut(s)	40, 190, 437, 490
FaiI	YATR	7 cut(s)	38, 180, 188, 310, 404, 435, 488
FatI	CATG	4 cut(s)	36, 186, 433, 486
FauI	CCCGC	2 cut(s)	33, 330
FblI	GTMKAC	1 cut(s)	430
FspBI	CTAG	3 cut(s)	132, 396, 483
GsaI	CCCAGC	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	174, 442
HapII	CCGG	2 cut(s)	74, 378
Hin1II	CATG	4 cut(s)	40, 190, 437, 490
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	2 cut(s)	92, 334
HpaII	CCGG	2 cut(s)	74, 378
Hpy166II	GTNNAC	1 cut(s)	431
Hpy188I	TCNGA	3 cut(s)	100, 330, 412
Hpy188III	TCNNGA	2 cut(s)	74, 301
Hpy8I	GTNNAC	1 cut(s)	431
HpyCH4V	TGCA	3 cut(s)	36, 190, 454
HpyF3I	CTNAG	1 cut(s)	327
Hsp92II	CATG	4 cut(s)	40, 190, 437, 490
Kpn2I	TCCGGA	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	70, 199
LweI	GCATC	4 cut(s)	105, 411, 441, 468
MaeI	CTAG	3 cut(s)	132, 396, 483
MalI	GATC	2 cut(s)	72, 201
MboI	GATC	2 cut(s)	70, 199
MboII	GAAGA	4 cut(s)	8, 155, 305, 343
MfeI	CAATTG	1 cut(s)	79
MflI	RGATCY	2 cut(s)	70, 199
MluCI	AATT	5 cut(s)	21, 79, 211, 414, 494
MlyI	GAGTC	1 cut(s)	328
MnlI	CCTC	7 cut(s)	55, 61, 164, 240, 297, 336, 435
Mph1103I	ATGCAT	1 cut(s)	192
MroI	TCCGGA	1 cut(s)	73
MseI	TTAA	7 cut(s)	45, 138, 152, 276, 384, 471, 498
MslI	CAYNNNNRTG	1 cut(s)	180
MspI	CCGG	2 cut(s)	74, 378
MspR9I	CCNGG	1 cut(s)	379
MunI	CAATTG	1 cut(s)	79
Mva1269I	GAATGC	1 cut(s)	190
NciI	CCSGG	1 cut(s)	379
NdeII	GATC	2 cut(s)	70, 199
NheI	GCTAGC	1 cut(s)	482
NlaIII	CATG	4 cut(s)	40, 190, 437, 490
NlaIV	GGNNCC	2 cut(s)	72, 443
NsiI	ATGCAT	1 cut(s)	192
NspI	RCATGY	3 cut(s)	40, 190, 490
PaeI	GCATGC	2 cut(s)	40, 190
PctI	GAATGC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	92
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PshBI	ATTAAT	1 cut(s)	471
PspFI	CCCAGC	1 cut(s)	203
PspN4I	GGNNCC	2 cut(s)	72, 443
PspPI	GGNCC	1 cut(s)	441
PsuI	RGATCY	2 cut(s)	70, 199
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	7 cut(s)	45, 138, 152, 276, 384, 471, 498
Sau3AI	GATC	2 cut(s)	70, 199
Sau96I	GGNCC	1 cut(s)	441
SchI	GAGTC	1 cut(s)	328
ScrFI	CCNGG	1 cut(s)	379
SetI	ASST	5 cut(s)	238, 258, 401, 484, 515
SfaNI	GCATC	4 cut(s)	105, 411, 441, 468
SmiMI	CAYNNNNRTG	1 cut(s)	180
SphI	GCATGC	2 cut(s)	40, 190
Sse9I	AATT	5 cut(s)	21, 79, 211, 414, 494
SsiI	CCGC	2 cut(s)	40, 323
SspMI	CTAG	3 cut(s)	132, 396, 483
StyD4I	CCNGG	1 cut(s)	377
StyI	CCWWGG	1 cut(s)	54
TasI	AATT	5 cut(s)	21, 79, 211, 414, 494
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	7 cut(s)	45, 138, 152, 276, 384, 471, 498
Tru9I	TTAA	7 cut(s)	45, 138, 152, 276, 384, 471, 498
TspDTI	ATGAA	2 cut(s)	271, 306
VspI	ATTAAT	1 cut(s)	471
XapI	RAATTY	1 cut(s)	494
XceI	RCATGY	3 cut(s)	40, 190, 490
XmiI	GTMKAC	1 cut(s)	430
XspI	CTAG	3 cut(s)	132, 396, 483
Zsp2I	ATGCAT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.