Rh4BG173800

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001632
Physical Location & Seq
Reverse (-)
30985018 .. 30985770
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG173800.1

Sequence Viewer

Length: 342 bp
ATGCTGGGGATAGACGGTAAAAAAAGAGATCTCCTCAATATATTTTCTAGTCTCCATCTATATCGCTCGTATCTTCCTGCTCTGCATGTTACTTGGAAGGGAGGTTTCATCGTCCTTGATGCAGATACACCTGCTCAATTCATTTGCATGGGCACAACTTCCCTTGTTGGTTGCTTGAAGGCCGAGATGTTGTGTGCCAACGCTTCCTCATCCCCCCTTCGAATATATCTTGATCTGAGGTCTTCATGTATCTCTGCTTCTCATCAGAAGTGGTTAGAGTATCAAACTTTAACCGATCGACATAAAACTATGTCCCCAGTGATGAGAGCAGAGTCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

113

Amino Acids

12.59

Weight (kDa)

8.76

Isoelectric Point (pI)

55.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 139
Acc36I ACCTGC 1 cut(s) 139
AgsI TTSAA 1 cut(s) 178
Alw26I GTCTC 1 cut(s) 56
AlwNI CAGNNNCTG 1 cut(s) 335
AoxI GGCC 1 cut(s) 180
AsuII TTCGAA 1 cut(s) 220
BaeGI GKGCMC 1 cut(s) 155
BarI GAAGNNNNNNTAC 2 cut(s) 241, 273
BbsI GAAGAC 1 cut(s) 234
BccI CCATC 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 139
BglII AGATCT 1 cut(s) 28
BmrI ACTGGG 1 cut(s) 311
BmsI GCATC 1 cut(s) 109
BmuI ACTGGG 1 cut(s) 311
BpiI GAAGAC 1 cut(s) 234
BplI GAGNNNNNCTC 2 cut(s) 18, 50
Bpu14I TTCGAA 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 317
BseGI GGATG 1 cut(s) 209
BseMII CTCAG 1 cut(s) 227
BseNI ACTGG 1 cut(s) 317
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 155
BseYI CCCAGC 1 cut(s) 4
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 1 cut(s) 182
BsiEI CGRYCG 1 cut(s) 298
BslFI GGGAC 1 cut(s) 298
BsmAI GTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 1 cut(s) 182
Bsp119I TTCGAA 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 3 cut(s) 28, 232, 295
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 1 cut(s) 228
BspMI ACCTGC 1 cut(s) 139
BspT104I TTCGAA 1 cut(s) 220
BsrI ACTGG 1 cut(s) 317
BssMI GATC 3 cut(s) 28, 232, 295
Bst4CI ACNGT 1 cut(s) 17
BstAPI GCANNNNNTGC 1 cut(s) 335
BstBI TTCGAA 1 cut(s) 220
BstDEI CTNAG 1 cut(s) 236
BstF5I GGATG 1 cut(s) 209
BstKTI GATC 3 cut(s) 31, 235, 298
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 3 cut(s) 28, 232, 295
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstNSI RCATGY 1 cut(s) 89
BstSLI GKGCMC 1 cut(s) 155
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BsuRI GGCC 1 cut(s) 182
BtsCI GGATG 1 cut(s) 209
BtsIMutI CAGTG 1 cut(s) 324
BveI ACCTGC 1 cut(s) 139
CaiI CAGNNNCTG 1 cut(s) 335
CviAII CATG 3 cut(s) 86, 148, 246
CviJI RGCY 1 cut(s) 182
CviKI_1 RGCY 1 cut(s) 182
DdeI CTNAG 1 cut(s) 236
DpnI GATC 3 cut(s) 30, 234, 297
DpnII GATC 3 cut(s) 28, 232, 295
FaeI CATG 3 cut(s) 89, 151, 249
FaiI YATR 8 cut(s) 41, 61, 87, 149, 226, 247, 303, 311
FaqI GGGAC 1 cut(s) 298
FatI CATG 3 cut(s) 85, 147, 245
FokI GGATG 1 cut(s) 196
FspBI CTAG 1 cut(s) 48
GsaI CCCAGC 1 cut(s) 8
HaeIII GGCC 1 cut(s) 182
Hin1II CATG 3 cut(s) 89, 151, 249
HinfI GANTC 1 cut(s) 332
Hpy188I TCNGA 2 cut(s) 237, 267
Hpy188III TCNNGA 1 cut(s) 230
HpyAV CCTTC 3 cut(s) 91, 172, 227
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4V TGCA 3 cut(s) 85, 122, 147
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 1 cut(s) 236
Hsp92II CATG 3 cut(s) 89, 151, 249
Kzo9I GATC 3 cut(s) 28, 232, 295
LpnPI CCDG 3 cut(s) 90, 144, 330
LweI GCATC 1 cut(s) 109
MaeI CTAG 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 88
MalI GATC 3 cut(s) 30, 234, 297
MboI GATC 3 cut(s) 28, 232, 295
MboII GAAGA 2 cut(s) 65, 234
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 1 cut(s) 137
MlyI GAGTC 1 cut(s) 341
MnlI CCTC 4 cut(s) 44, 95, 217, 231
MseI TTAA 1 cut(s) 290
MslI CAYNNNNRTG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 335
NdeII GATC 3 cut(s) 28, 232, 295
NlaIII CATG 3 cut(s) 89, 151, 249
NmeAIII GCCGAG 1 cut(s) 208
NspI RCATGY 1 cut(s) 89
NspV TTCGAA 1 cut(s) 220
PaqCI CACCTGC 1 cut(s) 139
Ple19I CGATCG 1 cut(s) 298
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
PspFI CCCAGC 1 cut(s) 4
PstNI CAGNNNCTG 1 cut(s) 335
PsuI RGATCY 1 cut(s) 28
PvuI CGATCG 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 146
SaqAI TTAA 1 cut(s) 290
Sau3AI GATC 3 cut(s) 28, 232, 295
SchI GAGTC 1 cut(s) 341
SduI GDGCHC 1 cut(s) 155
SetI ASST 3 cut(s) 106, 133, 242
SfaNI GCATC 1 cut(s) 109
SfuI TTCGAA 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 146
Sse9I AATT 1 cut(s) 137
SspMI CTAG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 17
TaqI TCGA 2 cut(s) 220, 298
TasI AATT 1 cut(s) 137
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TscAI CASTG 1 cut(s) 324
TspDTI ATGAA 3 cut(s) 97, 130, 234
TspRI CASTG 1 cut(s) 324
XceI RCATGY 1 cut(s) 89
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.