Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000974

Physical Location & Seq

Genomic Coordinates Reverse (-)

1650223 .. 1650828

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAAAACCATGAACGTGATAGTTGCTGTTCTCGCAGTGGCAGTAGTCTTGTTACATGGAGCGGAAGCTGTACTATACACAGTCGGAGACGACTTGGGATGGGCTATTCCTCCTGGTGGCGCTGCCACTTATGCTGCATGGGCTGCCGAGCATAGCTTTGTAGTTAACGATGAGCTAGAGTTCGACTTTGCAGAAGGTGAACAAGACCTGGCCCTAGTAACCAAGGATGATTACGAGAGCTGTAACACGGCGGATCCCTTGCATGTGTTCCAGGAAGCAGTGACACTCCAGTTTGTCGCAAGCGACACATTCTATTTCACCTCCACCTTGGCCGGGCACTGCACCAAAGGCCAGAAGATTGCCATTTACATCGGCGCTGCCTTGCCTCCCAGTCCTAGTCCCGCTCCAGGTCCGTGTCCATATTCAACATATTCATCAAGTGCTAATGAAAATCGTCCCCAATCGACTAAATTCGTCTCTCACAAGATCATGGCCCGAGGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

169

Amino Acids

17.89

Weight (kDa)

4.67

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	42 - 118	9.1e-14	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000974)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02910 FvH4_1g02970 FvH4_6g40671
malus_domestica	MD02G1028900.v1.1 MD02G1029100.v1.1 MD15G1170500.v1.1
prunus_persica	Prupe.7G245800_v2.0.a1 Prupe.7G245900_v2.0.a1 Prupe.7G246100_v2.0.a1
pyrus_communis	pycom02g02370 pycom02g02380 pycom02g02390 pycom02g02400 pycom15g15200
rosa_chinensis	RchiOBHm_Chr2g0088061 RchiOBHm_Chr2g0088081 RchiOBHm_Chr2g0156091 RchiOBHm_Chr2g0156121 RchiOBHm_Chr2g0156131 RchiOBHm_Chr5g0060121 RchiOBHm_Chr5g0060181
rosa_multiflora	Rmu_co8398493.1_g000001 Rmu_sc0000260.1_g000020 Rmu_sc0000493.1_g000045 Rmu_sc0003275.1_g000013 Rmu_sc0003275.1_g000020 Rmu_sc0003275.1_g000042 Rmu_sc0011922.1_g000011
rosa_roxburghii	Rroxscaffold_1G00020520 Rroxscaffold_1G00020540 Rroxscaffold_2G00152970 Rroxscaffold_2G00152990 Rroxscaffold_2G00153000 Rroxscaffold_2G00153020
rosa_rugosa	Rorug01G0480500 Rorug01G0480600 Rorug01G0480800 Rorug02G0451600 Rorug02G0451600 Rorug05G0328200
rosa_samantha	Rh2AG035400 Rh2AG035700 Rh2BG034400 Rh2BG034600 Rh2BG034900 Rh2BG529600 Rh2CG035600 Rh2CG036000 Rh2CG503200 Rh2DG035100 Rh2DG035500 Rh5AG392000 Rh5AG392100 Rh5BG404500 Rh5BG404600 Rh5CG428200 Rh5CG428600 Rh5DG420300
rosa_wichuraiana	Rw2G002780 Rw2G002790 Rw2G002810 Rw5G036960 Rw5G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	62, 404
AciI	CCGC	3 cut(s)	62, 251, 402
AclWI	GGATC	2 cut(s)	248, 261
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	470
AfaI	GTAC	1 cut(s)	72
AfiI	CCNNNNNNNGG	3 cut(s)	116, 333, 407
AgsI	TTSAA	1 cut(s)	426
AjnI	CCWGG	4 cut(s)	112, 207, 270, 406
AluBI	AGCT	4 cut(s)	68, 156, 175, 240
AluI	AGCT	4 cut(s)	68, 156, 175, 240
Alw26I	GTCTC	2 cut(s)	81, 481
AlwI	GGATC	2 cut(s)	248, 261
Ama87I	CYCGRG	1 cut(s)	495
AoxI	GGCC	4 cut(s)	210, 330, 349, 492
ApeKI	GCWGC	4 cut(s)	122, 134, 143, 377
ApoI	RAATTY	1 cut(s)	470
AspLEI	GCGC	2 cut(s)	122, 377
AspS9I	GGNCC	3 cut(s)	211, 410, 493
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	2 cut(s)	209, 310
AvaI	CYCGRG	1 cut(s)	495
AvaII	GGWCC	1 cut(s)	410
BaeGI	GKGCMC	1 cut(s)	339
BamHI	GGATCC	1 cut(s)	253
BbvI	GCAGC	4 cut(s)	109, 121, 130, 364
BccI	CCATC	1 cut(s)	93
BceAI	ACGGC	1 cut(s)	264
BciT130I	CCWGG	4 cut(s)	114, 209, 272, 408
BcnI	CCSGG	1 cut(s)	334
BcoDI	GTCTC	2 cut(s)	81, 481
BfaI	CTAG	4 cut(s)	176, 215, 396, 505
BfoI	RGCGCY	2 cut(s)	123, 378
BisI	GCNGC	4 cut(s)	123, 135, 144, 378
BlsI	GCNGC	4 cut(s)	124, 136, 145, 379
Bme1390I	CCNGG	5 cut(s)	114, 209, 272, 334, 408
Bme18I	GGWCC	1 cut(s)	410
BmeT110I	CYCGRG	1 cut(s)	495
BmgT120I	GGNCC	3 cut(s)	211, 410, 493
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	5 cut(s)	114, 209, 272, 334, 408
BmrI	ACTGGG	1 cut(s)	384
BmuI	ACTGGG	1 cut(s)	384
BpmI	CTGGAG	2 cut(s)	272, 390
BpuMI	CCSGG	1 cut(s)	334
BsaJI	CCNNGG	3 cut(s)	222, 327, 496
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 333, 407
Bse1I	ACTGG	2 cut(s)	289, 390
BseBI	CCWGG	4 cut(s)	114, 209, 272, 408
BseDI	CCNNGG	3 cut(s)	222, 327, 496
BseGI	GGATG	2 cut(s)	104, 232
BseLI	CCNNNNNNNGG	3 cut(s)	116, 333, 407
BseNI	ACTGG	2 cut(s)	289, 390
BseSI	GKGCMC	1 cut(s)	339
BseXI	GCAGC	4 cut(s)	109, 121, 130, 364
BsgI	GTGCAG	1 cut(s)	325
BshFI	GGCC	4 cut(s)	212, 332, 351, 494
BsiHKCI	CYCGRG	1 cut(s)	495
BsiSI	CCGG	1 cut(s)	333
BslFI	GGGAC	2 cut(s)	384, 441
BslI	CCNNNNNNNGG	3 cut(s)	116, 333, 407
BsmAI	GTCTC	2 cut(s)	81, 481
BsmBI	CGTCTC	2 cut(s)	81, 481
BsmFI	GGGAC	2 cut(s)	384, 441
BsnI	GGCC	4 cut(s)	212, 332, 351, 494
BsoBI	CYCGRG	1 cut(s)	495
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	2 cut(s)	253, 486
BspACI	CCGC	3 cut(s)	62, 251, 402
BspANI	GGCC	4 cut(s)	212, 332, 351, 494
BspLI	GGNNCC	1 cut(s)	255
BspPI	GGATC	2 cut(s)	248, 261
BsrBI	CCGCTC	2 cut(s)	62, 404
BsrI	ACTGG	2 cut(s)	289, 390
BssECI	CCNNGG	3 cut(s)	222, 327, 496
BssMI	GATC	2 cut(s)	253, 486
BssT1I	CCWWGG	2 cut(s)	222, 327
Bst2UI	CCWGG	4 cut(s)	114, 209, 272, 408
Bst4CI	ACNGT	1 cut(s)	82
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	301
BstF5I	GGATG	2 cut(s)	104, 232
BstH2I	RGCGCY	2 cut(s)	123, 378
BstHHI	GCGC	2 cut(s)	122, 377
BstKTI	GATC	2 cut(s)	256, 489
BstMAI	GTCTC	2 cut(s)	81, 481
BstMBI	GATC	2 cut(s)	253, 486
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 131, 140, 143, 348
BstNI	CCWGG	4 cut(s)	114, 209, 272, 408
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	5 cut(s)	112, 207, 270, 332, 406
BstSLI	GKGCMC	1 cut(s)	339
BstV1I	GCAGC	4 cut(s)	109, 121, 130, 364
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BsuRI	GGCC	4 cut(s)	212, 332, 351, 494
BtsCI	GGATG	2 cut(s)	104, 232
BtsI	GCAGTG	3 cut(s)	42, 285, 337
BtsIMutI	CAGTG	3 cut(s)	42, 285, 337
Cac8I	GCNNGC	1 cut(s)	301
CfoI	GCGC	2 cut(s)	122, 377
Cfr13I	GGNCC	3 cut(s)	211, 410, 493
Csp6I	GTAC	1 cut(s)	71
CviAII	CATG	5 cut(s)	10, 56, 138, 263, 490
CviQI	GTAC	1 cut(s)	71
DpnI	GATC	2 cut(s)	255, 488
DpnII	GATC	2 cut(s)	253, 486
EaeI	YGGCCR	1 cut(s)	330
EciI	GGCGGA	1 cut(s)	266
Eco130I	CCWWGG	2 cut(s)	222, 327
Eco47I	GGWCC	1 cut(s)	410
Eco88I	CYCGRG	1 cut(s)	495
EcoRII	CCWGG	4 cut(s)	112, 207, 270, 406
EcoT14I	CCWWGG	2 cut(s)	222, 327
ErhI	CCWWGG	2 cut(s)	222, 327
Esp3I	CGTCTC	2 cut(s)	81, 481
FaeI	CATG	5 cut(s)	13, 59, 141, 266, 493
FaqI	GGGAC	2 cut(s)	384, 441
FatI	CATG	5 cut(s)	9, 55, 137, 262, 489
FauI	CCCGC	1 cut(s)	409
Fnu4HI	GCNGC	4 cut(s)	123, 135, 144, 378
FokI	GGATG	2 cut(s)	111, 239
Fsp4HI	GCNGC	4 cut(s)	123, 135, 144, 378
FspBI	CTAG	4 cut(s)	176, 215, 396, 505
GlaI	GCGC	2 cut(s)	121, 376
GluI	GCNGC	4 cut(s)	123, 135, 144, 378
GsuI	CTGGAG	2 cut(s)	272, 390
HaeII	RGCGCY	2 cut(s)	123, 378
HaeIII	GGCC	4 cut(s)	212, 332, 351, 494
HapII	CCGG	1 cut(s)	333
HhaI	GCGC	2 cut(s)	122, 377
Hin1II	CATG	5 cut(s)	13, 59, 141, 266, 493
Hin6I	GCGC	2 cut(s)	120, 375
HinP1I	GCGC	2 cut(s)	120, 375
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HpaI	GTTAAC	1 cut(s)	166
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	2 cut(s)	209, 310
Hpy166II	GTNNAC	2 cut(s)	166, 200
Hpy188I	TCNGA	1 cut(s)	86
Hpy8I	GTNNAC	2 cut(s)	166, 200
HpyAV	CCTTC	1 cut(s)	188
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	4 cut(s)	137, 191, 262, 342
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 131, 140, 143, 348
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	5 cut(s)	13, 59, 141, 266, 493
HspAI	GCGC	2 cut(s)	120, 375
KspAI	GTTAAC	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	253, 486
LmnI	GCTCC	2 cut(s)	59, 409
Lsp1109I	GCAGC	4 cut(s)	109, 121, 130, 364
MaeI	CTAG	4 cut(s)	176, 215, 396, 505
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	4 cut(s)	51, 217, 242, 280
MalI	GATC	2 cut(s)	255, 488
MbiI	CCGCTC	2 cut(s)	62, 404
MboI	GATC	2 cut(s)	253, 486
MboII	GAAGA	1 cut(s)	367
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	339
MluCI	AATT	1 cut(s)	470
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	4 cut(s)	120, 331, 396, 491
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	14
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	5 cut(s)	114, 209, 272, 334, 408
MvaI	CCWGG	4 cut(s)	114, 209, 272, 408
MwoI	GCNNNNNNNGC	5 cut(s)	32, 131, 140, 143, 348
NciI	CCSGG	1 cut(s)	334
NdeII	GATC	2 cut(s)	253, 486
NlaIII	CATG	5 cut(s)	13, 59, 141, 266, 493
NlaIV	GGNNCC	1 cut(s)	255
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	1 cut(s)	266
PfoI	TCCNGGA	1 cut(s)	270
PkrI	GCNGC	4 cut(s)	124, 136, 145, 379
Psp6I	CCWGG	4 cut(s)	112, 207, 270, 406
PspGI	CCWGG	4 cut(s)	112, 207, 270, 406
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	3 cut(s)	211, 410, 493
PsuI	RGATCY	1 cut(s)	253
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	4 cut(s)	123, 135, 144, 378
Sau3AI	GATC	2 cut(s)	253, 486
Sau96I	GGNCC	3 cut(s)	211, 410, 493
ScrFI	CCNGG	5 cut(s)	114, 209, 272, 334, 408
SduI	GDGCHC	1 cut(s)	339
SinI	GGWCC	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	14
Sse9I	AATT	1 cut(s)	470
SsiI	CCGC	3 cut(s)	62, 251, 402
SspMI	CTAG	4 cut(s)	176, 215, 396, 505
StyD4I	CCNGG	5 cut(s)	112, 207, 270, 332, 406
StyI	CCWWGG	2 cut(s)	222, 327
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	2 cut(s)	183, 464
TasI	AATT	1 cut(s)	470
TatI	WGTACW	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	3 cut(s)	42, 285, 344
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	4 cut(s)	122, 134, 143, 377
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	4 cut(s)	17, 26, 423, 462
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	3 cut(s)	42, 285, 344
VpaK11BI	GGWCC	1 cut(s)	410
XapI	RAATTY	1 cut(s)	470
XceI	RCATGY	1 cut(s)	266
XspI	CTAG	4 cut(s)	176, 215, 396, 505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.