RchiOBHm_Chr2g0156121

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000974
Physical Location & Seq
Forward (+)
72854290 .. 72855544
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52496

Sequence Viewer

Length: 330 bp
ATGAAGGTGAATGTTGTGATATTGGTCTTTGTTATAGCACTGGCAGTGGTAATGTTACGTGGAACAGAAGCTGAAAAATACAGGGTTGGAGGCAACTTGGGTTGGACTATCCCTCCTGGTGGCGCTGCCACTTATGCTTCATGGGCTTCAAAGTACACCTTCAAAGTTGACAAGGATCTTATAGCATTGGCAGCAGCAATGTTAAGTGCAACAGAAGCTAGAAAGTATAGAGTCGGAGGCGACTTGGTTGGACTATCCCTCCCAGCGGCGCTGCCTCTTATGCTTCATGGGCTTCAAAGTACACCTTCAAAGTTGACGAGGATATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

109

Amino Acids

11.59

Weight (kDa)

9.91

Isoelectric Point (pI)

23.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 266
AclWI GGATC 1 cut(s) 183
AfaI GTAC 2 cut(s) 155, 301
AfiI CCNNNNNNNGG 2 cut(s) 119, 265
AgsI TTSAA 4 cut(s) 150, 163, 296, 309
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 2 cut(s) 71, 218
AluI AGCT 2 cut(s) 71, 218
AlwI GGATC 1 cut(s) 183
AlwNI CAGNNNCTG 1 cut(s) 71
ApeKI GCWGC 4 cut(s) 125, 191, 194, 271
AspLEI GCGC 2 cut(s) 125, 271
AsuHPI GGTGA 1 cut(s) 19
BbvI GCAGC 4 cut(s) 112, 203, 206, 258
BciT130I CCWGG 1 cut(s) 117
BfaI CTAG 1 cut(s) 219
BfoI RGCGCY 2 cut(s) 126, 272
BisI GCNGC 5 cut(s) 126, 192, 195, 267, 272
BlsI GCNGC 5 cut(s) 127, 193, 196, 268, 273
Bme1390I CCNGG 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 117
BsaAI YACGTR 1 cut(s) 59
BsaXI ACNNNNNCTCC 4 cut(s) 97, 127, 243, 273
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 265
Bse1I ACTGG 1 cut(s) 45
Bse3DI GCAATG 1 cut(s) 204
BseBI CCWGG 1 cut(s) 117
BseLI CCNNNNNNNGG 2 cut(s) 119, 265
BseMI GCAATG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 45
BseXI GCAGC 4 cut(s) 112, 203, 206, 258
BseYI CCCAGC 1 cut(s) 262
BslI CCNNNNNNNGG 2 cut(s) 119, 265
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 1 cut(s) 266
BspPI GGATC 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 204
BsrI ACTGG 1 cut(s) 45
BssMI GATC 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 117
BstBAI YACGTR 1 cut(s) 59
BstH2I RGCGCY 2 cut(s) 126, 272
BstHHI GCGC 2 cut(s) 125, 271
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 6 cut(s) 134, 143, 191, 215, 280, 289
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstV1I GCAGC 4 cut(s) 112, 203, 206, 258
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 2 cut(s) 38, 51
CaiI CAGNNNCTG 1 cut(s) 71
CfoI GCGC 2 cut(s) 125, 271
Csp6I GTAC 2 cut(s) 154, 300
CviAII CATG 2 cut(s) 141, 287
CviJI RGCY 4 cut(s) 71, 146, 218, 292
CviKI_1 RGCY 4 cut(s) 71, 146, 218, 292
CviQI GTAC 2 cut(s) 154, 300
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 115
FaeI CATG 2 cut(s) 144, 290
FaiI YATR 8 cut(s) 35, 135, 142, 182, 228, 281, 288, 328
FalI AAGNNNNNCTT 4 cut(s) 143, 175, 289, 321
FatI CATG 2 cut(s) 140, 286
Fnu4HI GCNGC 5 cut(s) 126, 192, 195, 267, 272
Fsp4HI GCNGC 5 cut(s) 126, 192, 195, 267, 272
FspBI CTAG 1 cut(s) 219
GlaI GCGC 2 cut(s) 124, 270
GluI GCNGC 5 cut(s) 126, 192, 195, 267, 272
GsaI CCCAGC 1 cut(s) 266
HaeII RGCGCY 2 cut(s) 126, 272
HhaI GCGC 2 cut(s) 125, 271
Hin1II CATG 2 cut(s) 144, 290
Hin6I GCGC 2 cut(s) 123, 269
HinP1I GCGC 2 cut(s) 123, 269
HincII GTYRAC 2 cut(s) 169, 315
HindII GTYRAC 2 cut(s) 169, 315
HinfI GANTC 1 cut(s) 231
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 4 cut(s) 156, 169, 302, 315
Hpy188I TCNGA 1 cut(s) 236
Hpy8I GTNNAC 4 cut(s) 156, 169, 302, 315
HpyAV CCTTC 2 cut(s) 169, 315
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 6 cut(s) 134, 143, 191, 215, 280, 289
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 2 cut(s) 144, 290
HspAI GCGC 2 cut(s) 123, 269
Kzo9I GATC 1 cut(s) 175
LpnPI CCDG 5 cut(s) 26, 67, 102, 129, 276
Lsp1109I GCAGC 4 cut(s) 112, 203, 206, 258
MaeI CTAG 1 cut(s) 219
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 1 cut(s) 54
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MflI RGATCY 1 cut(s) 175
MlyI GAGTC 1 cut(s) 240
MmeI TCCRAC 4 cut(s) 67, 83, 214, 229
MnlI CCTC 6 cut(s) 83, 123, 230, 269, 285, 312
MseI TTAA 1 cut(s) 203
MspA1I CMGCKG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 6 cut(s) 134, 143, 191, 215, 280, 289
NdeII GATC 1 cut(s) 175
NlaIII CATG 2 cut(s) 144, 290
PkrI GCNGC 5 cut(s) 127, 193, 196, 268, 273
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
Ppu21I YACGTR 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 262
PspGI CCWGG 1 cut(s) 115
PstNI CAGNNNCTG 1 cut(s) 71
PsuI RGATCY 1 cut(s) 175
RsaI GTAC 2 cut(s) 155, 301
RsaNI GTAC 2 cut(s) 154, 300
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 5 cut(s) 126, 192, 195, 267, 272
Sau3AI GATC 1 cut(s) 175
SchI GAGTC 1 cut(s) 240
ScrFI CCNGG 1 cut(s) 117
SetI ASST 6 cut(s) 9, 61, 73, 161, 220, 307
SsiI CCGC 1 cut(s) 266
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 115
TaiI ACGT 1 cut(s) 61
TatI WGTACW 2 cut(s) 153, 299
TauI GCSGC 1 cut(s) 269
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TscAI CASTG 2 cut(s) 45, 51
TseI GCWGC 4 cut(s) 125, 191, 194, 271
TspDTI ATGAA 3 cut(s) 17, 129, 275
TspRI CASTG 2 cut(s) 45, 51
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.