Rorug02G0451600

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000974
Physical Location & Seq
Reverse (-)
57932907 .. 57935568
2662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0451600.1

Sequence Viewer

Length: 1335 bp
ATGCGTTATTTGCAGCCGTTATGGGATGCTGGTGGTCAATCTGGAACTTCACTCTTACCTGATGATCAGACTGAATTGCTTAGAAGTAGACTTGATATTCATGTGAAGGGGGACATAGTTCCAGGACCTATCTTGTCATTTGCTTCATGTAATCTTCCTCAAAAGCTTGTCCAAAATATAGAGGCTGCAGGTTATGAAATGCCCACACCTGTCCAGATGCAAGCAATTCCGGCTGCTTTGCATGGCAAAAACTTGCTTGTCTCTGCTGACACAGGCTCTGGTAAAACTGCTTCCTTTCTGGTTCCAATTGTTTCTTGTTGCTCGCATTTTCGCTTTGAGCACTTGACGGACCAGAAAAAGCCGTTAGCTATGGTTCTAACTCCGACCAGAGAGCTCTGTATACAAGTTGAGGAACAAGCTAAGTTGCTTGGAAAGGGTTTGCCTTTTAAAACTGCACTTGTGGTTGGTGGCGACGCAATGCCCAGACAACTTTTCCGCATTCAGCAAGGAGTGGAGCTCATTGTGGGAACCCCGGGAAGACTAATTGATCTTTTAGCAAACCATGATATTGAACTGGAGGATATAAGGATTTTTGTTCTTGATGAGGTGGATTGCATGCTCCAAAGGGGCTTCCGGGATCAGGTGATGCAGATATTTAGGGCTCTGTCACAACCCCAGGTTTTACTGTATTCTGCAACAATCTCCCAAGATATAGAGAAGATGGTGAGCTCTATGTCAAAAGATGTTGCTGTAATCTCTGTTGGCAAGCCTAACAGACCAAATAAGGCTGTGAAGCAGCTGCCTATATGGGTTGAGTCAAAGCAAAAGAAGCAAAAGCTTTTCGACATATTGATGAGCAAGCAGCATTTTATGCCACCTGTTGTGGTTTATGTGGCATCAAGACTTGGGGCGGATCTGTTATCTAATGCAATTACAGTCACCACTGGTGTGAAAGCTTTATCAATCCATGGGGAGAAATCCATGAAGGAGAGGAGAGATATCATGAAGTCATTTTTAATGGGTGATGTTCCTGTTATTGTAGCCACCGGTGTTTTAGGCCGTGGGCTAGATCTCTTGGGTGTAAGACAGGTTATTGTTTTTGACATGCCCAATTCCATTAATGAGTATGTCCACCAGATTGGTAGGGCATCTAGATTAGGAGAAGAGGGTACAGCAATTGTGTTTGTATGTCAGGAGAATAAGAACTTGTTTCCAGAATTGGTTGAAATTTTAAGATCTTCTGGTGCAGCTATACCTAGGGAGCTTGTTAGAACACGGTATACGGCATGCCCATACTCCATTGGCCGAGGCCAGAAGAAAAGAAAGCATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

444

Amino Acids

49.11

Weight (kDa)

9.04

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 69 - 240 1.2e-43 DEAD/DEAH box helicase
Helicase_C PF00271 276 - 387 6.4e-21 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 179
AccI GTMKAC 3 cut(s) 88, 400, 1280
AciI CCGC 2 cut(s) 496, 911
AclWI GGATC 2 cut(s) 645, 921
AcoI YGGCCR 1 cut(s) 1303
AcsI RAATTY 1 cut(s) 1227
AfaI GTAC 1 cut(s) 1171
AfiI CCNNNNNNNGG 1 cut(s) 640
AgeI ACCGGT 1 cut(s) 1046
AgsI TTSAA 2 cut(s) 572, 1226
AjnI CCWGG 2 cut(s) 121, 675
AleI CACNNNNGTG 1 cut(s) 947
Alw21I GWGCWC 4 cut(s) 342, 396, 519, 731
Alw26I GTCTC 1 cut(s) 265
AlwI GGATC 2 cut(s) 645, 921
AlwNI CAGNNNCTG 1 cut(s) 278
Ama87I CYCGRG 1 cut(s) 532
AoxI GGCC 3 cut(s) 1057, 1303, 1309
ApeKI GCWGC 7 cut(s) 13, 185, 233, 796, 799, 862, 1247
ApoI RAATTY 1 cut(s) 1227
AseI ATTAAT 1 cut(s) 1119
AsiGI ACCGGT 1 cut(s) 1046
AspA2I CCTAGG 1 cut(s) 1256
AspS9I GGNCC 2 cut(s) 125, 349
AsuC2I CCSGG 3 cut(s) 533, 534, 635
AsuHPI GGTGA 4 cut(s) 655, 736, 931, 1034
AvaI CYCGRG 1 cut(s) 532
AvaII GGWCC 2 cut(s) 125, 349
AvrII CCTAGG 1 cut(s) 1256
BanII GRGCYC 4 cut(s) 396, 519, 664, 731
BarI GAAGNNNNNNTAC 2 cut(s) 274, 306
BbsI GAAGAC 1 cut(s) 544
Bbv12I GWGCWC 4 cut(s) 342, 396, 519, 731
BbvI GCAGC 7 cut(s) 25, 172, 220, 786, 808, 874, 1259
BccI CCATC 1 cut(s) 715
BceAI ACGGC 3 cut(s) 346, 1044, 1299
BciT130I CCWGG 2 cut(s) 123, 677
BclI TGATCA 1 cut(s) 64
BcnI CCSGG 3 cut(s) 533, 534, 635
BcoDI GTCTC 1 cut(s) 265
BfaI CTAG 3 cut(s) 1067, 1152, 1257
BfmI CTRYAG 1 cut(s) 186
BfuAI ACCTGC 1 cut(s) 179
BglII AGATCT 2 cut(s) 1069, 1235
BisI GCNGC 7 cut(s) 14, 186, 234, 797, 800, 863, 1248
BlnI CCTAGG 1 cut(s) 1256
BlsI GCNGC 7 cut(s) 15, 187, 235, 798, 801, 864, 1249
Bme1390I CCNGG 5 cut(s) 123, 533, 534, 635, 677
Bme18I GGWCC 2 cut(s) 125, 349
BmeT110I CYCGRG 1 cut(s) 532
BmgT120I GGNCC 2 cut(s) 125, 349
BmiI GGNNCC 2 cut(s) 303, 529
BmrFI CCNGG 5 cut(s) 123, 533, 534, 635, 677
BmsI GCATC 5 cut(s) 16, 207, 636, 905, 1157
BpiI GAAGAC 1 cut(s) 544
BplI GAGNNNNNCTC 2 cut(s) 501, 533
BpmI CTGGAG 1 cut(s) 596
BpuMI CCSGG 3 cut(s) 533, 534, 635
BsaJI CCNNGG 7 cut(s) 531, 532, 675, 967, 1060, 1256, 1306
BsaWI WCCGGW 1 cut(s) 1046
Bsc4I CCNNNNNNNGG 1 cut(s) 640
Bse118I RCCGGY 1 cut(s) 1046
Bse1I ACTGG 2 cut(s) 579, 949
Bse3DI GCAATG 1 cut(s) 483
BseBI CCWGG 2 cut(s) 123, 677
BseDI CCNNGG 7 cut(s) 531, 532, 675, 967, 1060, 1256, 1306
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 640
BseMI GCAATG 1 cut(s) 483
BseNI ACTGG 2 cut(s) 579, 949
BseRI GAGGAG 1 cut(s) 1006
BseXI GCAGC 7 cut(s) 25, 172, 220, 786, 808, 874, 1259
BsgI GTGCAG 2 cut(s) 438, 1266
BshFI GGCC 3 cut(s) 1059, 1305, 1311
BshTI ACCGGT 1 cut(s) 1046
BsiHKAI GWGCWC 4 cut(s) 342, 396, 519, 731
BsiHKCI CYCGRG 1 cut(s) 532
BsiSI CCGG 4 cut(s) 230, 533, 634, 1047
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 640
BsmAI GTCTC 1 cut(s) 265
BsmFI GGGAC 1 cut(s) 125
BsmI GAATGC 1 cut(s) 498
BsnI GGCC 3 cut(s) 1059, 1305, 1311
BsoBI CYCGRG 1 cut(s) 532
Bsp1286I GDGCHC 5 cut(s) 342, 396, 519, 664, 731
Bsp143I GATC 6 cut(s) 64, 547, 637, 913, 1069, 1235
Bsp19I CCATGG 1 cut(s) 967
BspACI CCGC 2 cut(s) 496, 911
BspANI GGCC 3 cut(s) 1059, 1305, 1311
BspHI TCATGA 1 cut(s) 1002
BspLI GGNNCC 2 cut(s) 303, 529
BspMAI CTGCAG 1 cut(s) 190
BspMI ACCTGC 1 cut(s) 179
BspPI GGATC 2 cut(s) 645, 921
BsrDI GCAATG 1 cut(s) 483
BsrFI RCCGGY 1 cut(s) 1046
BsrI ACTGG 2 cut(s) 579, 949
BssAI RCCGGY 1 cut(s) 1046
BssECI CCNNGG 7 cut(s) 531, 532, 675, 967, 1060, 1256, 1306
BssMI GATC 6 cut(s) 64, 547, 637, 913, 1069, 1235
BssNAI GTATAC 2 cut(s) 401, 1281
BssT1I CCWWGG 2 cut(s) 967, 1256
Bst1107I GTATAC 2 cut(s) 401, 1281
Bst2UI CCWGG 2 cut(s) 123, 677
Bst4CI ACNGT 3 cut(s) 687, 937, 1278
Bst6I CTCTTC 1 cut(s) 1158
BstAPI GCANNNNNTGC 1 cut(s) 871
BstC8I GCNNGC 6 cut(s) 222, 323, 617, 767, 860, 1288
BstDEI CTNAG 2 cut(s) 80, 420
BstDSI CCRYGG 2 cut(s) 967, 1060
BstF5I GGATG 1 cut(s) 31
BstKTI GATC 6 cut(s) 67, 550, 640, 916, 1072, 1238
BstMAI GTCTC 1 cut(s) 265
BstMBI GATC 6 cut(s) 64, 547, 637, 913, 1069, 1235
BstMWI GCNNNNNNNGC 4 cut(s) 10, 230, 829, 871
BstNI CCWGG 2 cut(s) 123, 677
BstNSI RCATGY 3 cut(s) 619, 1108, 1290
BstSCI CCNGG 5 cut(s) 121, 531, 532, 633, 675
BstSFI CTRYAG 1 cut(s) 186
BstV1I GCAGC 7 cut(s) 25, 172, 220, 786, 808, 874, 1259
BstV2I GAAGAC 1 cut(s) 544
BstX2I RGATCY 3 cut(s) 913, 1069, 1235
BstXI CCANNNNNNTGG 1 cut(s) 1139
BstYI RGATCY 3 cut(s) 913, 1069, 1235
BstZ17I GTATAC 2 cut(s) 401, 1281
BsuRI GGCC 3 cut(s) 1059, 1305, 1311
BtgI CCRYGG 2 cut(s) 967, 1060
BtsCI GGATG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 942
BveI ACCTGC 1 cut(s) 179
Cac8I GCNNGC 6 cut(s) 222, 323, 617, 767, 860, 1288
CaiI CAGNNNCTG 1 cut(s) 278
CciI TCATGA 1 cut(s) 1002
Cfr10I RCCGGY 1 cut(s) 1046
Cfr13I GGNCC 2 cut(s) 125, 349
Cfr9I CCCGGG 1 cut(s) 532
CseI GACGC 1 cut(s) 482
Csp6I GTAC 1 cut(s) 1170
CspAI ACCGGT 1 cut(s) 1046
CviQI GTAC 1 cut(s) 1170
DdeI CTNAG 2 cut(s) 80, 420
DpnI GATC 6 cut(s) 66, 549, 639, 915, 1071, 1237
DpnII GATC 6 cut(s) 64, 547, 637, 913, 1069, 1235
DraI TTTAAA 1 cut(s) 448
EaeI YGGCCR 1 cut(s) 1303
Eam1104I CTCTTC 1 cut(s) 1158
EarI CTCTTC 1 cut(s) 1158
EciI GGCGGA 1 cut(s) 926
Ecl136II GAGCTC 3 cut(s) 394, 517, 729
Eco130I CCWWGG 2 cut(s) 967, 1256
Eco24I GRGCYC 4 cut(s) 396, 519, 664, 731
Eco32I GATATC 1 cut(s) 1000
Eco47I GGWCC 2 cut(s) 125, 349
Eco53kI GAGCTC 3 cut(s) 394, 517, 729
Eco88I CYCGRG 1 cut(s) 532
EcoICRI GAGCTC 3 cut(s) 394, 517, 729
EcoO109I RGGNCCY 1 cut(s) 125
EcoRII CCWGG 2 cut(s) 121, 675
EcoRV GATATC 1 cut(s) 1000
EcoT14I CCWWGG 2 cut(s) 967, 1256
EcoT38I GRGCYC 4 cut(s) 396, 519, 664, 731
ErhI CCWWGG 2 cut(s) 967, 1256
FaqI GGGAC 1 cut(s) 125
FbaI TGATCA 1 cut(s) 64
FblI GTMKAC 3 cut(s) 88, 400, 1280
Fnu4HI GCNGC 7 cut(s) 14, 186, 234, 797, 800, 863, 1248
FokI GGATG 1 cut(s) 38
FriOI GRGCYC 4 cut(s) 396, 519, 664, 731
Fsp4HI GCNGC 7 cut(s) 14, 186, 234, 797, 800, 863, 1248
FspBI CTAG 3 cut(s) 1067, 1152, 1257
GluI GCNGC 7 cut(s) 14, 186, 234, 797, 800, 863, 1248
GsuI CTGGAG 1 cut(s) 596
HaeIII GGCC 3 cut(s) 1059, 1305, 1311
HapII CCGG 4 cut(s) 230, 533, 634, 1047
HgaI GACGC 1 cut(s) 482
HindIII AAGCTT 3 cut(s) 164, 836, 954
HinfI GANTC 1 cut(s) 815
HpaII CCGG 4 cut(s) 230, 533, 634, 1047
HphI GGTGA 4 cut(s) 655, 736, 931, 1034
Hpy166II GTNNAC 4 cut(s) 89, 401, 1132, 1281
Hpy188I TCNGA 2 cut(s) 69, 384
Hpy188III TCNNGA 8 cut(s) 42, 214, 599, 900, 1003, 1152, 1193, 1214
Hpy8I GTNNAC 4 cut(s) 89, 401, 1132, 1281
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 2 cut(s) 100, 979
HpyCH4III ACNGT 3 cut(s) 687, 937, 1278
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 230, 829, 871
HpyF3I CTNAG 2 cut(s) 80, 420
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 6 cut(s) 64, 547, 637, 913, 1069, 1235
LmnI GCTCC 3 cut(s) 514, 624, 1261
Lsp1109I GCAGC 7 cut(s) 25, 172, 220, 786, 808, 874, 1259
LweI GCATC 5 cut(s) 16, 207, 636, 905, 1157
MaeI CTAG 3 cut(s) 1067, 1152, 1257
MaeIII GTNAC 2 cut(s) 666, 937
MalI GATC 6 cut(s) 66, 549, 639, 915, 1071, 1237
MboI GATC 6 cut(s) 64, 547, 637, 913, 1069, 1235
MboII GAAGA 6 cut(s) 146, 549, 730, 1175, 1230, 1327
MfeI CAATTG 2 cut(s) 306, 1176
MflI RGATCY 3 cut(s) 913, 1069, 1235
MhlI GDGCHC 5 cut(s) 342, 396, 519, 664, 731
MluCI AATT 9 cut(s) 74, 225, 306, 543, 930, 1111, 1176, 1217, 1227
MlyI GAGTC 1 cut(s) 824
MmeI TCCRAC 1 cut(s) 407
MnlI CCTC 8 cut(s) 168, 175, 403, 571, 598, 984, 1159, 1301
MseI TTAA 4 cut(s) 447, 1016, 1119, 1232
MslI CAYNNNNRTG 2 cut(s) 851, 947
MspA1I CMGCKG 1 cut(s) 799
MspI CCGG 4 cut(s) 230, 533, 634, 1047
MspR9I CCNGG 5 cut(s) 123, 533, 534, 635, 677
MunI CAATTG 2 cut(s) 306, 1176
Mva1269I GAATGC 1 cut(s) 498
MvaI CCWGG 2 cut(s) 123, 677
MwoI GCNNNNNNNGC 4 cut(s) 10, 230, 829, 871
NciI CCSGG 3 cut(s) 533, 534, 635
NcoI CCATGG 1 cut(s) 967
NdeII GATC 6 cut(s) 64, 547, 637, 913, 1069, 1235
NlaIV GGNNCC 2 cut(s) 303, 529
NmeAIII GCCGAG 1 cut(s) 1331
NmuCI GTSAC 2 cut(s) 666, 937
NspI RCATGY 3 cut(s) 619, 1108, 1290
OliI CACNNNNGTG 1 cut(s) 947
PaeI GCATGC 2 cut(s) 619, 1290
PagI TCATGA 1 cut(s) 1002
PctI GAATGC 1 cut(s) 498
PfoI TCCNGGA 2 cut(s) 121, 633
PinAI ACCGGT 1 cut(s) 1046
PkrI GCNGC 7 cut(s) 15, 187, 235, 798, 801, 864, 1249
PleI GAGTC 1 cut(s) 823
PpsI GAGTC 1 cut(s) 823
PpuMI RGGWCCY 1 cut(s) 125
PshBI ATTAAT 1 cut(s) 1119
Psp124BI GAGCTC 3 cut(s) 396, 519, 731
Psp5II RGGWCCY 1 cut(s) 125
Psp6I CCWGG 2 cut(s) 121, 675
PspGI CCWGG 2 cut(s) 121, 675
PspN4I GGNNCC 2 cut(s) 303, 529
PspPI GGNCC 2 cut(s) 125, 349
PspPPI RGGWCCY 1 cut(s) 125
PsrI GAACNNNNNNTAC 2 cut(s) 1264, 1296
PstI CTGCAG 1 cut(s) 190
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 3 cut(s) 913, 1069, 1235
PvuII CAGCTG 1 cut(s) 799
RsaI GTAC 1 cut(s) 1171
RsaNI GTAC 1 cut(s) 1170
RseI CAYNNNNRTG 2 cut(s) 851, 947
SacI GAGCTC 3 cut(s) 396, 519, 731
SaqAI TTAA 4 cut(s) 447, 1016, 1119, 1232
SatI GCNGC 7 cut(s) 14, 186, 234, 797, 800, 863, 1248
Sau3AI GATC 6 cut(s) 64, 547, 637, 913, 1069, 1235
Sau96I GGNCC 2 cut(s) 125, 349
SchI GAGTC 1 cut(s) 824
ScrFI CCNGG 5 cut(s) 123, 533, 534, 635, 677
SduI GDGCHC 5 cut(s) 342, 396, 519, 664, 731
SfaNI GCATC 5 cut(s) 16, 207, 636, 905, 1157
SfcI CTRYAG 1 cut(s) 186
SgrAI CRCCGGYG 1 cut(s) 1046
SinI GGWCC 2 cut(s) 125, 349
SmaI CCCGGG 1 cut(s) 534
SmiMI CAYNNNNRTG 2 cut(s) 851, 947
SphI GCATGC 2 cut(s) 619, 1290
Sse9I AATT 9 cut(s) 74, 225, 306, 543, 930, 1111, 1176, 1217, 1227
SsiI CCGC 2 cut(s) 496, 911
SspMI CTAG 3 cut(s) 1067, 1152, 1257
SstI GAGCTC 3 cut(s) 396, 519, 731
StyD4I CCNGG 5 cut(s) 121, 531, 532, 633, 675
StyI CCWWGG 2 cut(s) 967, 1256
TaaI ACNGT 3 cut(s) 687, 937, 1278
TaqI TCGA 1 cut(s) 843
TasI AATT 9 cut(s) 74, 225, 306, 543, 930, 1111, 1176, 1217, 1227
Tru1I TTAA 4 cut(s) 447, 1016, 1119, 1232
Tru9I TTAA 4 cut(s) 447, 1016, 1119, 1232
TscAI CASTG 1 cut(s) 949
TseFI GTSAC 2 cut(s) 666, 937
TseI GCWGC 7 cut(s) 13, 185, 233, 796, 799, 862, 1247
Tsp45I GTSAC 2 cut(s) 666, 937
TspDTI ATGAA 5 cut(s) 89, 135, 210, 998, 1019
TspGWI ACGGA 1 cut(s) 362
TspMI CCCGGG 1 cut(s) 532
TspRI CASTG 1 cut(s) 949
VpaK11BI GGWCC 2 cut(s) 125, 349
VspI ATTAAT 1 cut(s) 1119
XapI RAATTY 1 cut(s) 1227
XbaI TCTAGA 1 cut(s) 1151
XceI RCATGY 3 cut(s) 619, 1108, 1290
XmaI CCCGGG 1 cut(s) 532
XmaJI CCTAGG 1 cut(s) 1256
XmiI GTMKAC 3 cut(s) 88, 400, 1280
XspI CTAG 3 cut(s) 1067, 1152, 1257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.