Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000974

Physical Location & Seq

Genomic Coordinates Reverse (-)

24874173 .. 24874738

Gene Structure 566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00020520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCATATGAAGTATGTGATCGTGCTTGTCATAGCAATTGCAGCAATCGCAGAAGGCGCCGATTACACTGTAGGAGACGACATGGGTTGGATGGTTCCTCCCACTCCCGACTATTATGCTTCATGGGTTTCCAAGTATTCTTTTGTGGAGAACGATACTCTAGTGTTTAACTTTGAAGAAGGAATGCATGACATCACTGTACTAACCAAGGAAGACTTCGACGCCTGTAACATGAAGGATCCCTTGTTTCAGTCCCCAAAACCAGGTAGAGTAACCGTTGAGGCGAGCGACACATTTTACTTCACGTGCAGCTTTGGTCAGCACTGCGCGAATGGGCAAAAGTTCGCCATTTATTTTGCCTCTGCACCTTTGCCTCCTAGTCCGAGTCCAAGTGCATCTGCTGCTACTGATCAATCTCTGGAGACCCAGCGGTTCAAGTTTGTGTCAAGAAAGATGGGTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

154

Amino Acids

17.09

Weight (kDa)

4.76

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	31 - 113	2.2e-13	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000974)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02910 FvH4_1g02970 FvH4_6g40671
malus_domestica	MD02G1028900.v1.1 MD02G1029100.v1.1 MD15G1170500.v1.1
prunus_persica	Prupe.7G245800_v2.0.a1 Prupe.7G245900_v2.0.a1 Prupe.7G246100_v2.0.a1
pyrus_communis	pycom02g02370 pycom02g02380 pycom02g02390 pycom02g02400 pycom15g15200
rosa_chinensis	RchiOBHm_Chr2g0088061 RchiOBHm_Chr2g0088081 RchiOBHm_Chr2g0156091 RchiOBHm_Chr2g0156121 RchiOBHm_Chr2g0156131 RchiOBHm_Chr5g0060121 RchiOBHm_Chr5g0060181
rosa_multiflora	Rmu_co8398493.1_g000001 Rmu_sc0000260.1_g000020 Rmu_sc0000493.1_g000045 Rmu_sc0003275.1_g000013 Rmu_sc0003275.1_g000020 Rmu_sc0003275.1_g000042 Rmu_sc0011922.1_g000011
rosa_roxburghii	Rroxscaffold_1G00020520 Rroxscaffold_1G00020540 Rroxscaffold_2G00152970 Rroxscaffold_2G00152990 Rroxscaffold_2G00153000 Rroxscaffold_2G00153020
rosa_rugosa	Rorug01G0480500 Rorug01G0480600 Rorug01G0480800 Rorug02G0451600 Rorug02G0451600 Rorug05G0328200
rosa_samantha	Rh2AG035400 Rh2AG035700 Rh2BG034400 Rh2BG034600 Rh2BG034900 Rh2BG529600 Rh2CG035600 Rh2CG036000 Rh2CG503200 Rh2DG035100 Rh2DG035500 Rh5AG392000 Rh5AG392100 Rh5BG404500 Rh5BG404600 Rh5CG428200 Rh5CG428600 Rh5DG420300
rosa_wichuraiana	Rw2G002780 Rw2G002790 Rw2G002810 Rw5G036960 Rw5G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	56
AccII	CGCG	1 cut(s)	329
AciI	CCGC	1 cut(s)	430
AclWI	GGATC	2 cut(s)	233, 246
AcvI	CACGTG	1 cut(s)	306
AcyI	GRCGYC	2 cut(s)	57, 222
AfaI	GTAC	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	176, 436
AjnI	CCWGG	1 cut(s)	262
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	1 cut(s)	312
AluI	AGCT	1 cut(s)	312
Alw26I	GTCTC	2 cut(s)	69, 416
AlwI	GGATC	2 cut(s)	233, 246
ApeKI	GCWGC	3 cut(s)	41, 309, 401
AspLEI	GCGC	2 cut(s)	59, 329
BaeI	ACNNNNGTAYC	2 cut(s)	147, 180
BamHI	GGATCC	1 cut(s)	238
BanI	GGYRCC	1 cut(s)	56
BbrPI	CACGTG	1 cut(s)	306
BbsI	GAAGAC	1 cut(s)	219
BbvI	GCAGC	3 cut(s)	53, 321, 388
BccI	CCATC	2 cut(s)	85, 448
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BciT130I	CCWGG	1 cut(s)	264
BclI	TGATCA	1 cut(s)	409
BcoDI	GTCTC	2 cut(s)	69, 416
BfaI	CTAG	3 cut(s)	161, 378, 463
BfmI	CTRYAG	1 cut(s)	69
BfoI	RGCGCY	1 cut(s)	60
BisI	GCNGC	3 cut(s)	42, 310, 402
BlsI	GCNGC	3 cut(s)	43, 311, 403
Bme1390I	CCNGG	1 cut(s)	264
BmiI	GGNNCC	3 cut(s)	58, 96, 240
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	404
BpiI	GAAGAC	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	440
BsaAI	YACGTR	1 cut(s)	306
BsaHI	GRCGYC	2 cut(s)	57, 222
BsaI	GGTCTC	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseXI	GCAGC	3 cut(s)	53, 321, 388
BseYI	CCCAGC	1 cut(s)	426
BsgI	GTGCAG	2 cut(s)	328, 348
Bsh1236I	CGCG	1 cut(s)	329
BshNI	GGYRCC	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	2 cut(s)	69, 416
BsmBI	CGTCTC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	238
BsmI	GAATGC	1 cut(s)	189
Bso31I	GGTCTC	1 cut(s)	416
Bsp143I	GATC	3 cut(s)	18, 238, 409
BspACI	CCGC	1 cut(s)	430
BspFNI	CGCG	1 cut(s)	329
BspLI	GGNNCC	3 cut(s)	58, 96, 240
BspPI	GGATC	2 cut(s)	233, 246
BspT107I	GGYRCC	1 cut(s)	56
BspTNI	GGTCTC	1 cut(s)	416
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	3 cut(s)	18, 238, 409
BssNI	GRCGYC	2 cut(s)	57, 222
BssT1I	CCWWGG	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	3 cut(s)	70, 199, 277
BstACI	GRCGYC	2 cut(s)	57, 222
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstBAI	YACGTR	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	96
BstFNI	CGCG	1 cut(s)	329
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	59, 329
BstKTI	GATC	3 cut(s)	21, 241, 412
BstMAI	GTCTC	2 cut(s)	69, 416
BstMBI	GATC	3 cut(s)	18, 238, 409
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 47, 56, 401
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	262
BstSFI	CTRYAG	1 cut(s)	69
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	3 cut(s)	53, 321, 388
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	96
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	3 cut(s)	66, 195, 322
Cac8I	GCNNGC	1 cut(s)	286
CfoI	GCGC	2 cut(s)	59, 329
CseI	GACGC	1 cut(s)	230
CsiI	ACCWGGT	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	4 cut(s)	82, 123, 188, 232
CviJI	RGCY	1 cut(s)	312
CviKI_1	RGCY	1 cut(s)	312
CviQI	GTAC	1 cut(s)	200
DinI	GGCGCC	1 cut(s)	58
DpnI	GATC	3 cut(s)	20, 240, 411
DpnII	GATC	3 cut(s)	18, 238, 409
Eco130I	CCWWGG	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	416
Eco72I	CACGTG	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	207
EcoT22I	ATGCAT	2 cut(s)	6, 189
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	207
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	4 cut(s)	85, 126, 191, 235
FaiI	YATR	9 cut(s)	6, 8, 15, 32, 83, 117, 124, 189, 233
FalI	AAGNNNNNCTT	4 cut(s)	200, 232, 227, 259
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	4 cut(s)	81, 122, 187, 231
FauNDI	CATATG	1 cut(s)	6
FbaI	TGATCA	1 cut(s)	409
Fnu4HI	GCNGC	3 cut(s)	42, 310, 402
FokI	GGATG	1 cut(s)	103
Fsp4HI	GCNGC	3 cut(s)	42, 310, 402
FspBI	CTAG	3 cut(s)	161, 378, 463
GlaI	GCGC	2 cut(s)	58, 328
GluI	GCNGC	3 cut(s)	42, 310, 402
GsaI	CCCAGC	1 cut(s)	430
GsuI	CTGGAG	1 cut(s)	440
HaeII	RGCGCY	1 cut(s)	60
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	2 cut(s)	59, 329
Hin1I	GRCGYC	2 cut(s)	57, 222
Hin1II	CATG	4 cut(s)	85, 126, 191, 235
Hin6I	GCGC	2 cut(s)	57, 327
HinP1I	GCGC	2 cut(s)	57, 327
HinfI	GANTC	1 cut(s)	385
Hpy188I	TCNGA	1 cut(s)	384
Hpy188III	TCNNGA	3 cut(s)	107, 419, 447
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	3 cut(s)	47, 173, 229
HpyCH4III	ACNGT	3 cut(s)	70, 199, 277
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	6 cut(s)	4, 41, 187, 309, 365, 395
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 47, 56, 401
HpySE526I	ACGT	1 cut(s)	305
Hsp92I	GRCGYC	2 cut(s)	57, 222
Hsp92II	CATG	4 cut(s)	85, 126, 191, 235
HspAI	GCGC	2 cut(s)	57, 327
KasI	GGCGCC	1 cut(s)	56
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	3 cut(s)	18, 238, 409
LpnPI	CCDG	5 cut(s)	238, 249, 276, 404, 440
Lsp1109I	GCAGC	3 cut(s)	53, 321, 388
LweI	GCATC	1 cut(s)	404
MabI	ACCWGGT	1 cut(s)	262
MaeI	CTAG	3 cut(s)	161, 378, 463
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	3 cut(s)	227, 271, 458
MalI	GATC	3 cut(s)	20, 240, 411
MboI	GATC	3 cut(s)	18, 238, 409
MboII	GAAGA	2 cut(s)	188, 224
MfeI	CAATTG	1 cut(s)	36
MflI	RGATCY	1 cut(s)	238
MluCI	AATT	1 cut(s)	36
Mly113I	GGCGCC	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	394
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	4 cut(s)	108, 274, 370, 384
Mph1103I	ATGCAT	2 cut(s)	6, 189
MseI	TTAA	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	430
MspR9I	CCNGG	1 cut(s)	264
MunI	CAATTG	1 cut(s)	36
Mva1269I	GAATGC	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	264
MvnI	CGCG	1 cut(s)	329
MwoI	GCNNNNNNNGC	4 cut(s)	41, 47, 56, 401
NarI	GGCGCC	1 cut(s)	57
NdeI	CATATG	1 cut(s)	6
NdeII	GATC	3 cut(s)	18, 238, 409
NlaIII	CATG	4 cut(s)	85, 126, 191, 235
NlaIV	GGNNCC	3 cut(s)	58, 96, 240
NsiI	ATGCAT	2 cut(s)	6, 189
PctI	GAATGC	1 cut(s)	189
PkrI	GCNGC	3 cut(s)	43, 311, 403
PleI	GAGTC	1 cut(s)	393
PluTI	GGCGCC	1 cut(s)	60
PmaCI	CACGTG	1 cut(s)	306
PmlI	CACGTG	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	393
Ppu21I	YACGTR	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	262
PspCI	CACGTG	1 cut(s)	306
PspFI	CCCAGC	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	3 cut(s)	58, 96, 240
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	3 cut(s)	42, 310, 402
Sau3AI	GATC	3 cut(s)	18, 238, 409
SchI	GAGTC	1 cut(s)	394
ScrFI	CCNGG	1 cut(s)	264
SetI	ASST	4 cut(s)	268, 308, 314, 370
SexAI	ACCWGGT	1 cut(s)	262
SfaNI	GCATC	1 cut(s)	404
SfcI	CTRYAG	1 cut(s)	69
SfoI	GGCGCC	1 cut(s)	58
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	1 cut(s)	430
SspDI	GGCGCC	1 cut(s)	56
SspMI	CTAG	3 cut(s)	161, 378, 463
StyD4I	CCNGG	1 cut(s)	262
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	3 cut(s)	70, 199, 277
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	1 cut(s)	219
TasI	AATT	1 cut(s)	36
TatI	WGTACW	1 cut(s)	199
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	3 cut(s)	73, 202, 329
TseI	GCWGC	3 cut(s)	41, 309, 401
TspDTI	ATGAA	3 cut(s)	23, 111, 248
TspRI	CASTG	3 cut(s)	73, 202, 329
XspI	CTAG	3 cut(s)	161, 378, 463
Zsp2I	ATGCAT	2 cut(s)	6, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.