pycom02g02400

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000974
Physical Location & Seq
Reverse (-)
1491962 .. 1492596
635 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g02400.1

Sequence Viewer

Length: 447 bp
ATGGTTAAAACCATGAATTTTGGGAATGTGATGGGTCTAGCTATAGCAGTAGCAGCAGTATCAATGATGTTATATACAACAGAAGCTGCAGATTATGTAGTAGGAGACGACTTGGGTTGGACTGTCCCGCCAGGCGGCGATGCCAACTTCAACTTTACAGTAGGAGAACATACTGTGGCTTTAGTAACCAAGGAGAGTTACGAGATTTGCAACACAACAGATCCCTTATTTGAACTTAAGGAACCAAGAAGATTTCAATTTCCTGTGTCAGCCACATTTTACTTCACCTGCACCTTCACCGGCCACTGCGCTGGAGGCCAAAAGGTTGCGGTTTACATCAATCCCTCTGCAAATACTCCAAGTCCTAGTCCAGGTGTTGCTCCTCCACCTGCTGCGTCCCTGCCCTTCACATTTGTGTCCAAAATACTTGGGTACAAGAAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

149

Amino Acids

15.83

Weight (kDa)

5.56

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 49 - 107 9.9e-07 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 296, 397
Acc36I ACCTGC 2 cut(s) 296, 397
AciI CCGC 3 cut(s) 128, 135, 329
AclWI GGATC 1 cut(s) 215
AcoI YGGCCR 1 cut(s) 301
AcsI RAATTY 1 cut(s) 16
AfaI GTAC 1 cut(s) 434
AfiI CCNNNNNNNGG 2 cut(s) 134, 371
AflII CTTAAG 1 cut(s) 236
AgsI TTSAA 3 cut(s) 151, 233, 257
AjnI CCWGG 2 cut(s) 130, 370
AleI CACNNNNGTG 1 cut(s) 413
AluBI AGCT 2 cut(s) 41, 86
AluI AGCT 2 cut(s) 41, 86
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 1 cut(s) 215
AlwNI CAGNNNCTG 1 cut(s) 86
AoxI GGCC 2 cut(s) 301, 316
ApeKI GCWGC 3 cut(s) 53, 86, 392
ApoI RAATTY 1 cut(s) 16
AspLEI GCGC 1 cut(s) 311
AsuHPI GGTGA 2 cut(s) 277, 289
BbvI GCAGC 3 cut(s) 65, 73, 379
BccI CCATC 1 cut(s) 25
BciT130I CCWGG 2 cut(s) 132, 372
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 2 cut(s) 38, 366
BfmI CTRYAG 2 cut(s) 42, 87
BfrI CTTAAG 1 cut(s) 236
BfuAI ACCTGC 2 cut(s) 296, 397
BisI GCNGC 4 cut(s) 54, 87, 136, 393
BlsI GCNGC 4 cut(s) 55, 88, 137, 394
Bme1390I CCNGG 2 cut(s) 132, 372
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 2 cut(s) 132, 372
BmsI GCATC 1 cut(s) 130
BpmI CTGGAG 1 cut(s) 333
BsaJI CCNNGG 1 cut(s) 189
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 371
Bse118I RCCGGY 1 cut(s) 299
BseBI CCWGG 2 cut(s) 132, 372
BseDI CCNNGG 1 cut(s) 189
BseLI CCNNNNNNNGG 2 cut(s) 134, 371
BseRI GAGGAG 1 cut(s) 372
BseXI GCAGC 3 cut(s) 65, 73, 379
BsgI GTGCAG 1 cut(s) 274
BshFI GGCC 2 cut(s) 303, 318
BsiSI CCGG 1 cut(s) 300
BslFI GGGAC 2 cut(s) 110, 382
BslI CCNNNNNNNGG 2 cut(s) 134, 371
BsmAI GTCTC 1 cut(s) 99
BsmBI CGTCTC 1 cut(s) 99
BsmFI GGGAC 2 cut(s) 110, 382
BsnI GGCC 2 cut(s) 303, 318
Bsp143I GATC 1 cut(s) 220
BspACI CCGC 3 cut(s) 128, 135, 329
BspANI GGCC 2 cut(s) 303, 318
BspLI GGNNCC 1 cut(s) 243
BspMAI CTGCAG 1 cut(s) 91
BspMI ACCTGC 2 cut(s) 296, 397
BspPI GGATC 1 cut(s) 215
BspTI CTTAAG 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 299
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 189
Bst2UI CCWGG 2 cut(s) 132, 372
Bst4CI ACNGT 3 cut(s) 124, 160, 175
BstAFI CTTAAG 1 cut(s) 236
BstENI CCTNNNNNAGG 1 cut(s) 369
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 2 cut(s) 53, 315
BstNI CCWGG 2 cut(s) 132, 372
BstSCI CCNGG 2 cut(s) 130, 370
BstSFI CTRYAG 2 cut(s) 42, 87
BstV1I GCAGC 3 cut(s) 65, 73, 379
BstX2I RGATCY 1 cut(s) 220
BstXI CCANNNNNNTGG 1 cut(s) 311
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 2 cut(s) 303, 318
BtgZI GCGATG 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 1 cut(s) 304
BveI ACCTGC 2 cut(s) 296, 397
CaiI CAGNNNCTG 1 cut(s) 86
CfoI GCGC 1 cut(s) 311
Cfr10I RCCGGY 1 cut(s) 299
CseI GACGC 1 cut(s) 384
Csp6I GTAC 1 cut(s) 433
CviAII CATG 1 cut(s) 13
CviJI RGCY 6 cut(s) 41, 86, 179, 272, 303, 318
CviKI_1 RGCY 6 cut(s) 41, 86, 179, 272, 303, 318
CviQI GTAC 1 cut(s) 433
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
EaeI YGGCCR 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 189
EcoNI CCTNNNNNAGG 1 cut(s) 369
EcoRII CCWGG 2 cut(s) 130, 370
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 1 cut(s) 16
FaiI YATR 6 cut(s) 14, 44, 73, 75, 96, 171
FaqI GGGAC 2 cut(s) 110, 382
FatI CATG 1 cut(s) 12
FauI CCCGC 1 cut(s) 135
Fnu4HI GCNGC 4 cut(s) 54, 87, 136, 393
Fsp4HI GCNGC 4 cut(s) 54, 87, 136, 393
FspBI CTAG 2 cut(s) 38, 366
GlaI GCGC 1 cut(s) 310
GluI GCNGC 4 cut(s) 54, 87, 136, 393
GsuI CTGGAG 1 cut(s) 333
HaeIII GGCC 2 cut(s) 303, 318
HapII CCGG 1 cut(s) 300
HgaI GACGC 1 cut(s) 384
HhaI GCGC 1 cut(s) 311
Hin1II CATG 1 cut(s) 16
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HpaII CCGG 1 cut(s) 300
HphI GGTGA 2 cut(s) 277, 289
Hpy166II GTNNAC 1 cut(s) 334
Hpy8I GTNNAC 1 cut(s) 334
HpyAV CCTTC 2 cut(s) 304, 415
HpyCH4III ACNGT 3 cut(s) 124, 160, 175
HpyCH4V TGCA 4 cut(s) 89, 210, 291, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 315
Hsp92II CATG 1 cut(s) 16
HspAI GCGC 1 cut(s) 309
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 385
Lsp1109I GCAGC 3 cut(s) 65, 73, 379
LweI GCATC 1 cut(s) 130
MaeI CTAG 2 cut(s) 38, 366
MaeIII GTNAC 2 cut(s) 184, 197
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 1 cut(s) 261
MflI RGATCY 1 cut(s) 220
MluCI AATT 2 cut(s) 16, 257
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 3 cut(s) 308, 355, 393
MseI TTAA 2 cut(s) 6, 237
MslI CAYNNNNRTG 1 cut(s) 413
MspCI CTTAAG 1 cut(s) 236
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 2 cut(s) 132, 372
MvaI CCWGG 2 cut(s) 132, 372
MwoI GCNNNNNNNGC 2 cut(s) 53, 315
NdeII GATC 1 cut(s) 220
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 1 cut(s) 243
OliI CACNNNNGTG 1 cut(s) 413
PaqCI CACCTGC 2 cut(s) 296, 397
PkrI GCNGC 4 cut(s) 55, 88, 137, 394
Psp6I CCWGG 2 cut(s) 130, 370
PspGI CCWGG 2 cut(s) 130, 370
PspN4I GGNNCC 1 cut(s) 243
PstI CTGCAG 1 cut(s) 91
PstNI CAGNNNCTG 1 cut(s) 86
PsuI RGATCY 1 cut(s) 220
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
RseI CAYNNNNRTG 1 cut(s) 413
SaqAI TTAA 2 cut(s) 6, 237
SatI GCNGC 4 cut(s) 54, 87, 136, 393
Sau3AI GATC 1 cut(s) 220
ScrFI CCNGG 2 cut(s) 132, 372
SetI ASST 7 cut(s) 43, 88, 290, 296, 327, 376, 391
SfaNI GCATC 1 cut(s) 130
SfcI CTRYAG 2 cut(s) 42, 87
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 2 cut(s) 16, 257
SsiI CCGC 3 cut(s) 128, 135, 329
SspMI CTAG 2 cut(s) 38, 366
StyD4I CCNGG 2 cut(s) 130, 370
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 3 cut(s) 124, 160, 175
TasI AATT 2 cut(s) 16, 257
TauI GCSGC 1 cut(s) 138
Tru1I TTAA 2 cut(s) 6, 237
Tru9I TTAA 2 cut(s) 6, 237
TscAI CASTG 1 cut(s) 311
TseI GCWGC 3 cut(s) 53, 86, 392
TspDTI ATGAA 1 cut(s) 29
TspRI CASTG 1 cut(s) 311
Vha464I CTTAAG 1 cut(s) 236
XagI CCTNNNNNAGG 1 cut(s) 369
XapI RAATTY 1 cut(s) 16
XspI CTAG 2 cut(s) 38, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.