Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000974

Physical Location & Seq

Genomic Coordinates Forward (+)

67467902 .. 67469344

Gene Structure 1443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG503200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAGACACTTCACTGAAGCGGCTGAACAGTATGGAACTATACCAACTAGCCTGCAATCACCTGCTGGATGTCAGCACAATGCAAACGTCTCCACCTCAAAAATTTGGTGCGGCGCTGCCACTTATGCTTTATGGGCTTCAAAGTACACCTTCAAAGTTGACAAGGATCTTCTAGGGTTCGACTTCAAAGCAGGAGAAAAGGACGTGATTGTAGTCACAAAGGAGAATTTCGACATCTGCAACACCACGAAACCATTATATCAATACAAGGGTCCAGTATTTCTTAGAGCACATATTATCTCACTTGCAGCTTCGCCGGGCACTGCGCCAAGGGCCAAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

114

Amino Acids

12.57

Weight (kDa)

9.22

Isoelectric Point (pI)

29.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	40 - 90	1.3e-08	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000974)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02910 FvH4_1g02970 FvH4_6g40671
malus_domestica	MD02G1028900.v1.1 MD02G1029100.v1.1 MD15G1170500.v1.1
prunus_persica	Prupe.7G245800_v2.0.a1 Prupe.7G245900_v2.0.a1 Prupe.7G246100_v2.0.a1
pyrus_communis	pycom02g02370 pycom02g02380 pycom02g02390 pycom02g02400 pycom15g15200
rosa_chinensis	RchiOBHm_Chr2g0088061 RchiOBHm_Chr2g0088081 RchiOBHm_Chr2g0156091 RchiOBHm_Chr2g0156121 RchiOBHm_Chr2g0156131 RchiOBHm_Chr5g0060121 RchiOBHm_Chr5g0060181
rosa_multiflora	Rmu_co8398493.1_g000001 Rmu_sc0000260.1_g000020 Rmu_sc0000493.1_g000045 Rmu_sc0003275.1_g000013 Rmu_sc0003275.1_g000020 Rmu_sc0003275.1_g000042 Rmu_sc0011922.1_g000011
rosa_roxburghii	Rroxscaffold_1G00020520 Rroxscaffold_1G00020540 Rroxscaffold_2G00152970 Rroxscaffold_2G00152990 Rroxscaffold_2G00153000 Rroxscaffold_2G00153020
rosa_rugosa	Rorug01G0480500 Rorug01G0480600 Rorug01G0480800 Rorug02G0451600 Rorug02G0451600 Rorug05G0328200
rosa_samantha	Rh2AG035400 Rh2AG035700 Rh2BG034400 Rh2BG034600 Rh2BG034900 Rh2BG529600 Rh2CG035600 Rh2CG036000 Rh2CG503200 Rh2DG035100 Rh2DG035500 Rh5AG392000 Rh5AG392100 Rh5BG404500 Rh5BG404600 Rh5CG428200 Rh5CG428600 Rh5DG420300
rosa_wichuraiana	Rw2G002780 Rw2G002790 Rw2G002810 Rw5G036960 Rw5G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	70
Acc36I	ACCTGC	1 cut(s)	70
AciI	CCGC	2 cut(s)	20, 111
AclWI	GGATC	1 cut(s)	174
AcsI	RAATTY	2 cut(s)	102, 226
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	1 cut(s)	146
AgsI	TTSAA	3 cut(s)	141, 154, 187
AjiI	CACGTC	1 cut(s)	205
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	174
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	2 cut(s)	116, 308
ApoI	RAATTY	2 cut(s)	102, 226
AspLEI	GCGC	2 cut(s)	116, 328
AspS9I	GGNCC	2 cut(s)	272, 333
AsuC2I	CCSGG	1 cut(s)	318
AsuHPI	GGTGA	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	2 cut(s)	103, 320
BcnI	CCSGG	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	2 cut(s)	48, 173
BfoI	RGCGCY	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	70
BisI	GCNGC	4 cut(s)	21, 112, 117, 309
BlsI	GCNGC	4 cut(s)	22, 113, 118, 310
Bme1390I	CCNGG	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	272
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	272, 333
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	329
Bse1I	ACTGG	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	329
BseGI	GGATG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	323
BseXI	GCAGC	2 cut(s)	103, 320
BshFI	GGCC	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	317
BsmAI	GTCTC	1 cut(s)	94
BsmBI	CGTCTC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	335
Bsp1286I	GDGCHC	2 cut(s)	292, 323
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	2 cut(s)	20, 111
BspANI	GGCC	1 cut(s)	335
BspLI	GGNNCC	1 cut(s)	273
BspMI	ACCTGC	1 cut(s)	70
BspPI	GGATC	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	329
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	329
Bst4CI	ACNGT	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	74
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	2 cut(s)	116, 328
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 134, 332
BstSCI	CCNGG	1 cut(s)	316
BstSLI	GKGCMC	1 cut(s)	323
BstV1I	GCAGC	2 cut(s)	103, 320
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	335
BtrI	CACGTC	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	74
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	2 cut(s)	12, 321
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	53
CfoI	GCGC	2 cut(s)	116, 328
Cfr13I	GGNCC	2 cut(s)	272, 333
Csp6I	GTAC	1 cut(s)	145
CviJI	RGCY	5 cut(s)	23, 51, 137, 311, 335
CviKI_1	RGCY	5 cut(s)	23, 51, 137, 311, 335
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	1 cut(s)	284
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	329
Esp3I	CGTCTC	1 cut(s)	94
FaiI	YATR	6 cut(s)	33, 41, 126, 133, 259, 294
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
Fnu4HI	GCNGC	4 cut(s)	21, 112, 117, 309
FokI	GGATG	1 cut(s)	81
Fsp4HI	GCNGC	4 cut(s)	21, 112, 117, 309
FspBI	CTAG	2 cut(s)	48, 173
GlaI	GCGC	2 cut(s)	115, 327
GluI	GCNGC	4 cut(s)	21, 112, 117, 309
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	1 cut(s)	317
HhaI	GCGC	2 cut(s)	116, 328
Hin6I	GCGC	2 cut(s)	114, 326
HinP1I	GCGC	2 cut(s)	114, 326
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	2 cut(s)	147, 160
Hpy8I	GTNNAC	2 cut(s)	147, 160
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4IV	ACGT	2 cut(s)	87, 204
HpyCH4V	TGCA	4 cut(s)	55, 83, 240, 308
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 134, 332
HpyF3I	CTNAG	1 cut(s)	284
HpySE526I	ACGT	2 cut(s)	87, 204
HspAI	GCGC	2 cut(s)	114, 326
Kzo9I	GATC	1 cut(s)	166
LpnPI	CCDG	6 cut(s)	51, 65, 75, 177, 288, 330
Lsp1109I	GCAGC	2 cut(s)	103, 320
MaeI	CTAG	2 cut(s)	48, 173
MaeII	ACGT	2 cut(s)	87, 204
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	161
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	2 cut(s)	292, 323
MluCI	AATT	2 cut(s)	102, 226
MnlI	CCTC	1 cut(s)	106
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	3 cut(s)	125, 134, 332
NciI	CCSGG	1 cut(s)	318
NdeII	GATC	1 cut(s)	166
NlaIV	GGNNCC	1 cut(s)	273
NmuCI	GTSAC	1 cut(s)	214
PaqCI	CACCTGC	1 cut(s)	70
PkrI	GCNGC	4 cut(s)	22, 113, 118, 310
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	2 cut(s)	272, 333
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SatI	GCNGC	4 cut(s)	21, 112, 117, 309
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	2 cut(s)	272, 333
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	2 cut(s)	292, 323
SetI	ASST	7 cut(s)	64, 90, 98, 152, 207, 313, 344
SinI	GGWCC	1 cut(s)	272
Sse9I	AATT	2 cut(s)	102, 226
SsiI	CCGC	2 cut(s)	20, 111
SspMI	CTAG	2 cut(s)	48, 173
StyD4I	CCNGG	1 cut(s)	316
StyI	CCWWGG	1 cut(s)	329
TaaI	ACNGT	1 cut(s)	30
TaiI	ACGT	2 cut(s)	90, 207
TaqI	TCGA	2 cut(s)	180, 231
TasI	AATT	2 cut(s)	102, 226
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	2 cut(s)	23, 114
TscAI	CASTG	2 cut(s)	19, 328
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	2 cut(s)	116, 308
Tsp45I	GTSAC	1 cut(s)	214
TspRI	CASTG	2 cut(s)	19, 328
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	2 cut(s)	102, 226
XspI	CTAG	2 cut(s)	48, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.