pycom15g15200

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000974
Physical Location & Seq
Reverse (-)
10558832 .. 10559602
771 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g15200.2

Sequence Viewer

Length: 531 bp
ATGGTTAAACTCATGAATGTGAGTAATGTGGTTGTCCTTGTTCTAGCAGTGATTGCCACAACATTGCTACTTGGAGCAGAAGCTGGAGAATATACAGTGGGAGATGAGTTGGGTTGGACTATTCCTCCTGGTGGCGCTGCTACGTACGAAGCATGGGCTGCCAAGCATAACTTGTCCATTACTGATTTTATAAACTTCAACTTTAAAGTTGGAGAACAAGACTTGGCCATAGTAACCAAGAAGGATTACGACGCCTGCAACACGGACAACCCCTTATTTGTATTCAAAGAAGGCGGAGAGTTTCAGTTTGTTCAGTCGGACACATATTATTTGACCTGCACCTTCGCCGGCCACTGCACCAAAGGTCAAAAGATTGCTCTTTATATTGCTCCCGCTTTTTCTCCTTCTCCAAGTCCATCTTCATATCCAAGTGAAAAAACTGCTGCTCAACATGCTAATGCAGTCAAATTTGTTTCCAAGAAAGGTCAAGGGCTCAAGAAATTACTGCCTGTGATGATGAAGTCCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

177

Amino Acids

19.02

Weight (kDa)

6.82

Isoelectric Point (pI)

30.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 191
Acc36I ACCTGC 1 cut(s) 344
AciI CCGC 2 cut(s) 294, 393
AcoI YGGCCR 2 cut(s) 225, 349
AcsI RAATTY 1 cut(s) 467
AcyI GRCGYC 1 cut(s) 252
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 2 cut(s) 199, 286
AjnI CCWGG 1 cut(s) 127
AjuI GAANNNNNNNTTGG 2 cut(s) 403, 435
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
AlwNI CAGNNNCTG 1 cut(s) 83
AoxI GGCC 2 cut(s) 225, 349
ApeKI GCWGC 3 cut(s) 137, 158, 443
ApoI RAATTY 1 cut(s) 467
AspLEI GCGC 1 cut(s) 137
BalI TGGCCA 1 cut(s) 227
BanII GRGCYC 1 cut(s) 495
BbvI GCAGC 3 cut(s) 124, 145, 430
BccI CCATC 1 cut(s) 424
BciT130I CCWGG 1 cut(s) 129
BfaI CTAG 1 cut(s) 44
BfoI RGCGCY 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 344
BisI GCNGC 3 cut(s) 138, 159, 444
BlsI GCNGC 3 cut(s) 139, 160, 445
Bme1390I CCNGG 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 129
BpmI CTGGAG 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 479
BsaAI YACGTR 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 252
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse118I RCCGGY 1 cut(s) 347
Bse3DI GCAATG 1 cut(s) 62
BseBI CCWGG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMI GCAATG 1 cut(s) 62
BseXI GCAGC 3 cut(s) 124, 145, 430
BsgI GTGCAG 2 cut(s) 322, 340
BshFI GGCC 2 cut(s) 227, 351
BsiSI CCGG 1 cut(s) 348
BsiWI CGTACG 1 cut(s) 144
BslFI GGGAC 1 cut(s) 508
BslI CCNNNNNNNGG 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 508
BsnI GGCC 2 cut(s) 227, 351
Bsp1286I GDGCHC 1 cut(s) 495
BspACI CCGC 2 cut(s) 294, 393
BspANI GGCC 2 cut(s) 227, 351
BspHI TCATGA 1 cut(s) 12
BspMI ACCTGC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 62
BsrFI RCCGGY 1 cut(s) 347
BssAI RCCGGY 1 cut(s) 347
BssNI GRCGYC 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 97
BstACI GRCGYC 1 cut(s) 252
BstAPI GCANNNNNTGC 2 cut(s) 53, 158
BstBAI YACGTR 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 256, 349
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 1 cut(s) 137
BstMWI GCNNNNNNNGC 3 cut(s) 53, 158, 452
BstNI CCWGG 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 455
BstSCI CCNGG 1 cut(s) 127
BstSNI TACGTA 1 cut(s) 144
BstV1I GCAGC 3 cut(s) 124, 145, 430
BsuRI GGCC 2 cut(s) 227, 351
BtsI GCAGTG 2 cut(s) 54, 352
BtsIMutI CAGTG 3 cut(s) 54, 102, 352
BveI ACCTGC 1 cut(s) 344
Cac8I GCNNGC 2 cut(s) 256, 349
CaiI CAGNNNCTG 1 cut(s) 83
CciI TCATGA 1 cut(s) 12
CfoI GCGC 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 347
CseI GACGC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 145
CviAII CATG 3 cut(s) 13, 153, 452
CviJI RGCY 5 cut(s) 83, 158, 227, 351, 493
CviKI_1 RGCY 5 cut(s) 83, 158, 227, 351, 493
CviQI GTAC 1 cut(s) 145
DraI TTTAAA 1 cut(s) 205
EaeI YGGCCR 2 cut(s) 225, 349
EciI GGCGGA 1 cut(s) 309
Eco105I TACGTA 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 495
EcoRII CCWGG 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 495
FaeI CATG 3 cut(s) 16, 156, 455
FalI AAGNNNNNCTT 4 cut(s) 155, 187, 403, 435
FaqI GGGAC 1 cut(s) 508
FatI CATG 3 cut(s) 12, 152, 451
FauI CCCGC 1 cut(s) 400
Fnu4HI GCNGC 3 cut(s) 138, 159, 444
FriOI GRGCYC 1 cut(s) 495
Fsp4HI GCNGC 3 cut(s) 138, 159, 444
FspBI CTAG 1 cut(s) 44
GlaI GCGC 1 cut(s) 136
GluI GCNGC 3 cut(s) 138, 159, 444
GsuI CTGGAG 1 cut(s) 105
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 2 cut(s) 227, 351
HapII CCGG 1 cut(s) 348
HgaI GACGC 1 cut(s) 260
HhaI GCGC 1 cut(s) 137
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 3 cut(s) 16, 156, 455
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HpaII CCGG 1 cut(s) 348
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 2 cut(s) 13, 496
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 4 cut(s) 235, 284, 352, 414
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 4 cut(s) 258, 339, 357, 461
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 158, 452
HpySE526I ACGT 1 cut(s) 143
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 3 cut(s) 16, 156, 455
HspAI GCGC 1 cut(s) 135
KroI GCCGGC 1 cut(s) 347
KroNI GCCGGC 1 cut(s) 349
LmnI GCTCC 2 cut(s) 74, 394
LpnPI CCDG 7 cut(s) 69, 114, 141, 268, 349, 361, 522
Lsp1109I GCAGC 3 cut(s) 124, 145, 430
MaeI CTAG 1 cut(s) 44
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 1 cut(s) 232
MboII GAAGA 1 cut(s) 411
MhlI GDGCHC 1 cut(s) 495
MlsI TGGCCA 1 cut(s) 227
MluCI AATT 2 cut(s) 467, 500
MluNI TGGCCA 1 cut(s) 227
MmeI TCCRAC 3 cut(s) 95, 190, 297
MnlI CCTC 1 cut(s) 135
Mox20I TGGCCA 1 cut(s) 227
MroNI GCCGGC 1 cut(s) 347
MscI TGGCCA 1 cut(s) 227
MseI TTAA 2 cut(s) 6, 204
MslI CAYNNNNRTG 2 cut(s) 17, 456
Msp20I TGGCCA 1 cut(s) 227
MspI CCGG 1 cut(s) 348
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 3 cut(s) 53, 158, 452
NaeI GCCGGC 1 cut(s) 349
NgoMIV GCCGGC 1 cut(s) 347
NlaIII CATG 3 cut(s) 16, 156, 455
NspI RCATGY 1 cut(s) 455
PagI TCATGA 1 cut(s) 12
PdiI GCCGGC 1 cut(s) 349
Pfl23II CGTACG 1 cut(s) 144
PkrI GCNGC 3 cut(s) 139, 160, 445
Ppu21I YACGTR 1 cut(s) 144
PsiI TTATAA 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspLI CGTACG 1 cut(s) 144
PstNI CAGNNNCTG 1 cut(s) 83
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
RseI CAYNNNNRTG 2 cut(s) 17, 456
SaqAI TTAA 2 cut(s) 6, 204
SatI GCNGC 3 cut(s) 138, 159, 444
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 1 cut(s) 495
SetI ASST 6 cut(s) 85, 146, 338, 344, 367, 487
SmiMI CAYNNNNRTG 2 cut(s) 17, 456
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
SnaBI TACGTA 1 cut(s) 144
Sse9I AATT 2 cut(s) 467, 500
SsiI CCGC 2 cut(s) 294, 393
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 1 cut(s) 146
TasI AATT 2 cut(s) 467, 500
Tru1I TTAA 2 cut(s) 6, 204
Tru9I TTAA 2 cut(s) 6, 204
TscAI CASTG 3 cut(s) 54, 102, 359
TseI GCWGC 3 cut(s) 137, 158, 443
TspDTI ATGAA 2 cut(s) 29, 411
TspGWI ACGGA 1 cut(s) 278
TspRI CASTG 3 cut(s) 54, 102, 359
XapI RAATTY 1 cut(s) 467
XceI RCATGY 1 cut(s) 455
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.