Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000493.1

Orthogroup ID

OG0000974

Physical Location & Seq

Genomic Coordinates Forward (+)

206779 .. 209664

Gene Structure 2886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000493.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atgatgagtatgaagtatgtgatcgtgcttgtcatagcaattgtagcaatcgcagaaggcgccgagtacactgtaggagacgacatgggttggatggttcctcccactcccgactattatgcttcatgggtttccaagtattcttttgtggagaacgacactctagtgtttaactttgaagaaggaatgcatgacatcactgtactaaccaaggaagacttcgacgcctgcaacatgaagaatcccttgtttcagttcccaaatccagggggagttacagttgaggtgagtggcacaatttacttcacgtgcagctttggtcagcactgcgcgaatgggcaaaagttcgcaatttattttgcctctgcacctttgcctcctagtccgagtccaagtgcatctgctgctacagatcaatctctggacacccagcggttcaagtttgtgtcaagaaagatgggttgtcgtgggtatggcggtggtctgggccttcggctttctgtcgctagtgtagttgctcgtgcaggtgttgccggaggagttgaattggaggaagagtttggaagcttgaagagttggagacttttggatgttgctaagctttctgggttattgcttgatccatttcagttccaagtctctccttttataggctcaattggagggatgttgtggtggctcagagcctttagttttttgggtaaaatacttctccttcagctcgtacatgatttctgccctaaaatctgggaaaggggggcttacttgagagacgaagtcttgggaaaaggagaaggtcattgcagccgtggacagaggttgcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

275

Amino Acids

30.22

Weight (kDa)

5.62

Isoelectric Point (pI)

36.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000974)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02910 FvH4_1g02970 FvH4_6g40671
malus_domestica	MD02G1028900.v1.1 MD02G1029100.v1.1 MD15G1170500.v1.1
prunus_persica	Prupe.7G245800_v2.0.a1 Prupe.7G245900_v2.0.a1 Prupe.7G246100_v2.0.a1
pyrus_communis	pycom02g02370 pycom02g02380 pycom02g02390 pycom02g02400 pycom15g15200
rosa_chinensis	RchiOBHm_Chr2g0088061 RchiOBHm_Chr2g0088081 RchiOBHm_Chr2g0156091 RchiOBHm_Chr2g0156121 RchiOBHm_Chr2g0156131 RchiOBHm_Chr5g0060121 RchiOBHm_Chr5g0060181
rosa_multiflora	Rmu_co8398493.1_g000001 Rmu_sc0000260.1_g000020 Rmu_sc0000493.1_g000045 Rmu_sc0003275.1_g000013 Rmu_sc0003275.1_g000020 Rmu_sc0003275.1_g000042 Rmu_sc0011922.1_g000011
rosa_roxburghii	Rroxscaffold_1G00020520 Rroxscaffold_1G00020540 Rroxscaffold_2G00152970 Rroxscaffold_2G00152990 Rroxscaffold_2G00153000 Rroxscaffold_2G00153020
rosa_rugosa	Rorug01G0480500 Rorug01G0480600 Rorug01G0480800 Rorug02G0451600 Rorug02G0451600 Rorug05G0328200
rosa_samantha	Rh2AG035400 Rh2AG035700 Rh2BG034400 Rh2BG034600 Rh2BG034900 Rh2BG529600 Rh2CG035600 Rh2CG036000 Rh2CG503200 Rh2DG035100 Rh2DG035500 Rh5AG392000 Rh5AG392100 Rh5BG404500 Rh5BG404600 Rh5CG428200 Rh5CG428600 Rh5DG420300
rosa_wichuraiana	Rw2G002780 Rw2G002790 Rw2G002810 Rw5G036960 Rw5G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	515
Acc36I	ACCTGC	1 cut(s)	515
AccB1I	GGYRCC	1 cut(s)	59
AccII	CGCG	1 cut(s)	332
AciI	CCGC	2 cut(s)	433, 477
AclWI	GGATC	1 cut(s)	614
AcuI	CTGAAG	1 cut(s)	701
AcvI	CACGTG	1 cut(s)	309
AcyI	GRCGYC	2 cut(s)	60, 225
AfaI	GTAC	3 cut(s)	68, 204, 726
AfiI	CCNNNNNNNGG	2 cut(s)	266, 650
AgsI	TTSAA	4 cut(s)	179, 439, 545, 571
AjnI	CCWGG	1 cut(s)	265
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AleI	CACNNNNGTG	1 cut(s)	164
AluBI	AGCT	4 cut(s)	315, 567, 601, 721
AluI	AGCT	4 cut(s)	315, 567, 601, 721
Alw26I	GTCTC	4 cut(s)	72, 574, 643, 765
AlwI	GGATC	1 cut(s)	614
AoxI	GGCC	1 cut(s)	487
ApeKI	GCWGC	3 cut(s)	312, 404, 804
AspLEI	GCGC	2 cut(s)	62, 332
AspS9I	GGNCC	1 cut(s)	487
AsuHPI	GGTGA	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	59
BauI	CACGAG	1 cut(s)	519
BbrPI	CACGTG	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	222
BbvI	GCAGC	3 cut(s)	324, 391, 816
BccI	CCATC	2 cut(s)	88, 451
BceAI	ACGGC	1 cut(s)	792
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciT130I	CCWGG	1 cut(s)	267
BcoDI	GTCTC	4 cut(s)	72, 574, 643, 765
BfaI	CTAG	3 cut(s)	164, 381, 507
BfmI	CTRYAG	2 cut(s)	72, 408
BfoI	RGCGCY	1 cut(s)	63
BfuAI	ACCTGC	1 cut(s)	515
BisI	GCNGC	3 cut(s)	313, 405, 805
BlpI	GCTNAGC	1 cut(s)	597
BlsI	GCNGC	3 cut(s)	314, 406, 806
Bme1390I	CCNGG	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	487
BmiI	GGNNCC	2 cut(s)	61, 99
BmrFI	CCNGG	1 cut(s)	267
BmsI	GCATC	1 cut(s)	407
BpiI	GAAGAC	1 cut(s)	222
Bpu1102I	GCTNAGC	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	787
BsaAI	YACGTR	1 cut(s)	309
BsaHI	GRCGYC	2 cut(s)	60, 225
BsaJI	CCNNGG	3 cut(s)	210, 266, 808
BsaXI	ACNNNNNCTCC	4 cut(s)	264, 294, 542, 572
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 650
Bse3DI	GCAATG	1 cut(s)	799
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	3 cut(s)	210, 266, 808
BseGI	GGATG	3 cut(s)	99, 595, 672
BseLI	CCNNNNNNNGG	2 cut(s)	266, 650
BseMI	GCAATG	1 cut(s)	799
BseMII	CTCAG	1 cut(s)	694
BseRI	GAGGAG	1 cut(s)	552
BseXI	GCAGC	3 cut(s)	324, 391, 816
BseYI	CCCAGC	1 cut(s)	429
BsgI	GTGCAG	3 cut(s)	331, 351, 543
Bsh1236I	CGCG	1 cut(s)	332
BshFI	GGCC	1 cut(s)	489
BshNI	GGYRCC	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	534
BslI	CCNNNNNNNGG	2 cut(s)	266, 650
BsmAI	GTCTC	4 cut(s)	72, 574, 643, 765
BsmBI	CGTCTC	2 cut(s)	72, 765
BsmI	GAATGC	1 cut(s)	192
BsnI	GGCC	1 cut(s)	489
Bsp143I	GATC	3 cut(s)	21, 412, 619
Bsp1720I	GCTNAGC	1 cut(s)	597
BspACI	CCGC	2 cut(s)	433, 477
BspANI	GGCC	1 cut(s)	489
BspCNI	CTCAG	1 cut(s)	693
BspFNI	CGCG	1 cut(s)	332
BspLI	GGNNCC	2 cut(s)	61, 99
BspMI	ACCTGC	1 cut(s)	515
BspPI	GGATC	1 cut(s)	614
BspT107I	GGYRCC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	799
BssECI	CCNNGG	3 cut(s)	210, 266, 808
BssMI	GATC	3 cut(s)	21, 412, 619
BssNI	GRCGYC	2 cut(s)	60, 225
BssSI	CACGAG	1 cut(s)	519
BssT1I	CCWWGG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	519
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	3 cut(s)	73, 202, 280
Bst6I	CTCTTC	2 cut(s)	549, 566
BstACI	GRCGYC	2 cut(s)	60, 225
BstAPI	GCANNNNNTGC	2 cut(s)	404, 530
BstBAI	YACGTR	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	2 cut(s)	597, 680
BstDSI	CCRYGG	1 cut(s)	808
BstENI	CCTNNNNNAGG	1 cut(s)	648
BstF5I	GGATG	3 cut(s)	99, 595, 672
BstFNI	CGCG	1 cut(s)	332
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	2 cut(s)	62, 332
BstKTI	GATC	3 cut(s)	24, 415, 622
BstMAI	GTCTC	4 cut(s)	72, 574, 643, 765
BstMBI	GATC	3 cut(s)	21, 412, 619
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 59, 404, 530
BstNI	CCWGG	1 cut(s)	267
BstSCI	CCNGG	1 cut(s)	265
BstSFI	CTRYAG	2 cut(s)	72, 408
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	3 cut(s)	324, 391, 816
BstV2I	GAAGAC	1 cut(s)	222
BsuRI	GGCC	1 cut(s)	489
BtgI	CCRYGG	1 cut(s)	808
BtsCI	GGATG	3 cut(s)	99, 595, 672
BtsI	GCAGTG	1 cut(s)	325
BtsIMutI	CAGTG	3 cut(s)	69, 198, 325
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	1 cut(s)	229
CfoI	GCGC	2 cut(s)	62, 332
Cfr13I	GGNCC	1 cut(s)	487
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	3 cut(s)	67, 203, 725
CviAII	CATG	5 cut(s)	85, 126, 191, 235, 728
CviQI	GTAC	3 cut(s)	67, 203, 725
DdeI	CTNAG	2 cut(s)	597, 680
DinI	GGCGCC	1 cut(s)	61
DpnI	GATC	3 cut(s)	23, 414, 621
DpnII	GATC	3 cut(s)	21, 412, 619
Eam1104I	CTCTTC	2 cut(s)	549, 566
EarI	CTCTTC	2 cut(s)	549, 566
Eco130I	CCWWGG	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	701
Eco72I	CACGTG	1 cut(s)	309
EcoNI	CCTNNNNNAGG	1 cut(s)	648
EcoRII	CCWGG	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	210
EcoT22I	ATGCAT	1 cut(s)	192
EgeI	GGCGCC	1 cut(s)	61
EheI	GGCGCC	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	210
Esp3I	CGTCTC	2 cut(s)	72, 765
FaeI	CATG	5 cut(s)	88, 129, 194, 238, 731
FalI	AAGNNNNNCTT	6 cut(s)	203, 235, 230, 262, 745, 777
FatI	CATG	5 cut(s)	84, 125, 190, 234, 727
Fnu4HI	GCNGC	3 cut(s)	313, 405, 805
FokI	GGATG	3 cut(s)	106, 602, 679
Fsp4HI	GCNGC	3 cut(s)	313, 405, 805
FspBI	CTAG	3 cut(s)	164, 381, 507
GlaI	GCGC	2 cut(s)	61, 331
GluI	GCNGC	3 cut(s)	313, 405, 805
GsaI	CCCAGC	1 cut(s)	433
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	489
HapII	CCGG	1 cut(s)	534
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	2 cut(s)	62, 332
Hin1I	GRCGYC	2 cut(s)	60, 225
Hin1II	CATG	5 cut(s)	88, 129, 194, 238, 731
Hin6I	GCGC	2 cut(s)	60, 330
HinP1I	GCGC	2 cut(s)	60, 330
HindIII	AAGCTT	2 cut(s)	565, 599
HinfI	GANTC	2 cut(s)	241, 388
HpaII	CCGG	1 cut(s)	534
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	2 cut(s)	69, 812
Hpy188I	TCNGA	2 cut(s)	387, 683
Hpy188III	TCNNGA	3 cut(s)	110, 422, 450
Hpy8I	GTNNAC	2 cut(s)	69, 812
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	5 cut(s)	50, 176, 500, 725, 788
HpyCH4III	ACNGT	3 cut(s)	73, 202, 280
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	8 cut(s)	190, 231, 312, 368, 398, 524, 804, 823
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 59, 404, 530
HpyF3I	CTNAG	2 cut(s)	597, 680
HpySE526I	ACGT	1 cut(s)	308
Hsp92I	GRCGYC	2 cut(s)	60, 225
Hsp92II	CATG	5 cut(s)	88, 129, 194, 238, 731
HspAI	GCGC	2 cut(s)	60, 330
KasI	GGCGCC	1 cut(s)	59
Kzo9I	GATC	3 cut(s)	21, 412, 619
Lsp1109I	GCAGC	3 cut(s)	324, 391, 816
LweI	GCATC	1 cut(s)	407
MaeI	CTAG	3 cut(s)	164, 381, 507
MaeII	ACGT	1 cut(s)	308
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	3 cut(s)	23, 414, 621
MboI	GATC	3 cut(s)	21, 412, 619
MboII	GAAGA	5 cut(s)	191, 227, 250, 566, 583
MfeI	CAATTG	2 cut(s)	39, 657
MluCI	AATT	5 cut(s)	39, 297, 351, 545, 657
Mly113I	GGCGCC	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	397
MmeI	TCCRAC	2 cut(s)	71, 557
MnlI	CCTC	8 cut(s)	111, 277, 373, 387, 530, 544, 656, 810
Mph1103I	ATGCAT	1 cut(s)	192
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	433
MspI	CCGG	1 cut(s)	534
MspR9I	CCNGG	1 cut(s)	267
MunI	CAATTG	2 cut(s)	39, 657
Mva1269I	GAATGC	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	267
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	4 cut(s)	44, 59, 404, 530
NarI	GGCGCC	1 cut(s)	60
NdeII	GATC	3 cut(s)	21, 412, 619
NlaIII	CATG	5 cut(s)	88, 129, 194, 238, 731
NlaIV	GGNNCC	2 cut(s)	61, 99
NmeAIII	GCCGAG	1 cut(s)	88
NsiI	ATGCAT	1 cut(s)	192
OliI	CACNNNNGTG	1 cut(s)	164
PaqCI	CACCTGC	1 cut(s)	515
PctI	GAATGC	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	241
PflFI	GACNNNGTC	1 cut(s)	776
PkrI	GCNGC	3 cut(s)	314, 406, 806
PleI	GAGTC	1 cut(s)	396
PluTI	GGCGCC	1 cut(s)	63
PmaCI	CACGTG	1 cut(s)	309
PmlI	CACGTG	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	396
Ppu21I	YACGTR	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	265
PspCI	CACGTG	1 cut(s)	309
PspFI	CCCAGC	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	2 cut(s)	61, 99
PspPI	GGNCC	1 cut(s)	487
PsyI	GACNNNGTC	1 cut(s)	776
RsaI	GTAC	3 cut(s)	68, 204, 726
RsaNI	GTAC	3 cut(s)	67, 203, 725
RseI	CAYNNNNRTG	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	3 cut(s)	313, 405, 805
Sau3AI	GATC	3 cut(s)	21, 412, 619
Sau96I	GGNCC	1 cut(s)	487
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	1 cut(s)	267
SfaNI	GCATC	1 cut(s)	407
SfcI	CTRYAG	2 cut(s)	72, 408
SfoI	GGCGCC	1 cut(s)	61
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	766
SmoI	CTYRAG	1 cut(s)	766
Sse9I	AATT	5 cut(s)	39, 297, 351, 545, 657
SsiI	CCGC	2 cut(s)	433, 477
SspDI	GGCGCC	1 cut(s)	59
SspMI	CTAG	3 cut(s)	164, 381, 507
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	3 cut(s)	73, 202, 280
TaiI	ACGT	1 cut(s)	311
TaqI	TCGA	1 cut(s)	222
TasI	AATT	5 cut(s)	39, 297, 351, 545, 657
TatI	WGTACW	2 cut(s)	66, 202
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	3 cut(s)	76, 205, 332
TseI	GCWGC	3 cut(s)	312, 404, 804
TspDTI	ATGAA	3 cut(s)	26, 114, 251
TspRI	CASTG	3 cut(s)	76, 205, 332
Tth111I	GACNNNGTC	1 cut(s)	776
XagI	CCTNNNNNAGG	1 cut(s)	648
XspI	CTAG	3 cut(s)	164, 381, 507
Zsp2I	ATGCAT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.