FvH4_1g02970

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000974
Physical Location & Seq
Reverse (-)
1677329 .. 1677882
554 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02970.t1

Sequence Viewer

Length: 465 bp
ATGAATATGAAGTATGTGGTCGTGCTTGTCATAGCAATTGCAGCAATGGCAGAAGCAGCACAATACACTGTAGGAGACGACATGGGTTGGATGGTTCCTCCCACTCCTGACTATTATGCTACATGGGTTTCCAAGTATTACTTCGTTGAGAACGATACTCTAGTGTTTAACTTTAAACAAGGAATGCATGACATCACTGTACTAACCAAGGAAGACTTCGACTCATGCAACATGGCAAATCCTTTGTTTCAATCCCCAGAACCAGGTGAGGTTATGGTTATGGCCAGCGACACATTTTACTTCACCTGCAGCTTCGGTCAGCACTGCGCTAACGGCCAGAAGTTCGCCATTTACTTTGCCTCTGCACCTTTGCCTCCCAGTCCAAGTCCATTTCCAAGTGAATCTGCTACTGTCGAAAAAGCTAAGCAGTCCCGGAAGTTCAAGTTTGTATCGATGGGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

155

Amino Acids

17.2

Weight (kDa)

4.85

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 31 - 113 1.5e-13 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 314
Acc36I ACCTGC 1 cut(s) 314
AcoI YGGCCR 2 cut(s) 282, 334
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 2 cut(s) 251, 442
AjnI CCWGG 1 cut(s) 262
AjuI GAANNNNNNNTTGG 4 cut(s) 125, 157, 200, 232
AluBI AGCT 2 cut(s) 312, 422
AluI AGCT 2 cut(s) 312, 422
Alw26I GTCTC 1 cut(s) 69
AoxI GGCC 2 cut(s) 282, 334
ApeKI GCWGC 3 cut(s) 41, 56, 309
AspLEI GCGC 1 cut(s) 329
AsuC2I CCSGG 1 cut(s) 433
AsuHPI GGTGA 2 cut(s) 278, 295
BaeI ACNNNNGTAYC 2 cut(s) 147, 180
BalI TGGCCA 1 cut(s) 284
BbsI GAAGAC 1 cut(s) 219
BbvI GCAGC 3 cut(s) 53, 68, 321
BccI CCATC 2 cut(s) 85, 448
BceAI ACGGC 1 cut(s) 349
BciT130I CCWGG 1 cut(s) 264
BcnI CCSGG 1 cut(s) 433
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 2 cut(s) 161, 463
BfmI CTRYAG 2 cut(s) 69, 307
BfuAI ACCTGC 1 cut(s) 314
BisI GCNGC 3 cut(s) 42, 57, 310
BlpI GCTNAGC 1 cut(s) 423
BlsI GCNGC 3 cut(s) 43, 58, 311
Bme1390I CCNGG 2 cut(s) 264, 433
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 2 cut(s) 264, 433
BmrI ACTGGG 1 cut(s) 372
BmuI ACTGGG 1 cut(s) 372
BpiI GAAGAC 1 cut(s) 219
Bpu1102I GCTNAGC 1 cut(s) 423
BpuMI CCSGG 1 cut(s) 433
Bsa29I ATCGAT 1 cut(s) 452
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 378
Bse3DI GCAATG 1 cut(s) 51
BseBI CCWGG 1 cut(s) 264
BseCI ATCGAT 1 cut(s) 452
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMI GCAATG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 378
BseXI GCAGC 3 cut(s) 53, 68, 321
BsgI GTGCAG 1 cut(s) 348
BshFI GGCC 2 cut(s) 284, 336
BshVI ATCGAT 1 cut(s) 452
BsiSI CCGG 1 cut(s) 433
BslFI GGGAC 1 cut(s) 415
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 69
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 415
BsmI GAATGC 1 cut(s) 189
BsnI GGCC 2 cut(s) 284, 336
Bsp1720I GCTNAGC 1 cut(s) 423
BspANI GGCC 2 cut(s) 284, 336
BspDI ATCGAT 1 cut(s) 452
BspLI GGNNCC 1 cut(s) 96
BspMAI CTGCAG 1 cut(s) 311
BspMI ACCTGC 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 51
BsrI ACTGG 1 cut(s) 378
BssECI CCNNGG 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 3 cut(s) 70, 199, 412
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 1 cut(s) 423
BstF5I GGATG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 329
BstMAI GTCTC 1 cut(s) 69
BstMWI GCNNNNNNNGC 4 cut(s) 41, 47, 56, 333
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 2 cut(s) 262, 431
BstSFI CTRYAG 2 cut(s) 69, 307
BstV1I GCAGC 3 cut(s) 53, 68, 321
BstV2I GAAGAC 1 cut(s) 219
Bsu15I ATCGAT 1 cut(s) 452
BsuRI GGCC 2 cut(s) 284, 336
BsuTUI ATCGAT 1 cut(s) 452
BtsCI GGATG 1 cut(s) 96
BtsI GCAGTG 1 cut(s) 322
BtsIMutI CAGTG 3 cut(s) 66, 195, 322
BveI ACCTGC 1 cut(s) 314
Cac8I GCNNGC 1 cut(s) 286
CfoI GCGC 1 cut(s) 329
ClaI ATCGAT 1 cut(s) 452
CsiI ACCWGGT 1 cut(s) 262
Csp6I GTAC 1 cut(s) 200
CviAII CATG 5 cut(s) 82, 123, 188, 225, 232
CviJI RGCY 4 cut(s) 284, 312, 336, 422
CviKI_1 RGCY 4 cut(s) 284, 312, 336, 422
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 1 cut(s) 423
DraI TTTAAA 1 cut(s) 175
EaeI YGGCCR 2 cut(s) 282, 334
Eco130I CCWWGG 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 207
EcoT22I ATGCAT 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 207
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 5 cut(s) 85, 126, 191, 228, 235
FalI AAGNNNNNCTT 4 cut(s) 125, 157, 200, 232
FaqI GGGAC 1 cut(s) 415
FatI CATG 5 cut(s) 81, 122, 187, 224, 231
Fnu4HI GCNGC 3 cut(s) 42, 57, 310
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 3 cut(s) 42, 57, 310
FspBI CTAG 2 cut(s) 161, 463
GlaI GCGC 1 cut(s) 328
GluI GCNGC 3 cut(s) 42, 57, 310
HaeIII GGCC 2 cut(s) 284, 336
HapII CCGG 1 cut(s) 433
HhaI GCGC 1 cut(s) 329
Hin1II CATG 5 cut(s) 85, 126, 191, 228, 235
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HinfI GANTC 2 cut(s) 221, 401
HpaII CCGG 1 cut(s) 433
HphI GGTGA 2 cut(s) 278, 295
Hpy188III TCNNGA 1 cut(s) 107
HpyCH4III ACNGT 3 cut(s) 70, 199, 412
HpyCH4V TGCA 5 cut(s) 41, 187, 228, 309, 365
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 47, 56, 333
HpyF3I CTNAG 1 cut(s) 423
Hsp92II CATG 5 cut(s) 85, 126, 191, 228, 235
HspAI GCGC 1 cut(s) 327
LpnPI CCDG 9 cut(s) 120, 249, 270, 276, 298, 319, 350, 391, 446
Lsp1109I GCAGC 3 cut(s) 53, 68, 321
MabI ACCWGGT 1 cut(s) 262
MaeI CTAG 2 cut(s) 161, 463
MboII GAAGA 1 cut(s) 224
MfeI CAATTG 1 cut(s) 36
MlsI TGGCCA 1 cut(s) 284
MluCI AATT 1 cut(s) 36
MluNI TGGCCA 1 cut(s) 284
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 4 cut(s) 108, 262, 370, 384
Mox20I TGGCCA 1 cut(s) 284
Mph1103I ATGCAT 1 cut(s) 189
MscI TGGCCA 1 cut(s) 284
MseI TTAA 2 cut(s) 168, 174
Msp20I TGGCCA 1 cut(s) 284
MspI CCGG 1 cut(s) 433
MspR9I CCNGG 2 cut(s) 264, 433
MunI CAATTG 1 cut(s) 36
Mva1269I GAATGC 1 cut(s) 189
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 4 cut(s) 41, 47, 56, 333
NciI CCSGG 1 cut(s) 433
NlaIII CATG 5 cut(s) 85, 126, 191, 228, 235
NlaIV GGNNCC 1 cut(s) 96
NsiI ATGCAT 1 cut(s) 189
PaqCI CACCTGC 1 cut(s) 314
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PctI GAATGC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 401
PfoI TCCNGGA 1 cut(s) 431
PkrI GCNGC 3 cut(s) 43, 58, 311
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 96
PstI CTGCAG 1 cut(s) 311
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SaqAI TTAA 2 cut(s) 168, 174
SatI GCNGC 3 cut(s) 42, 57, 310
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 2 cut(s) 264, 433
SetI ASST 6 cut(s) 268, 273, 308, 314, 370, 424
SexAI ACCWGGT 1 cut(s) 262
SfcI CTRYAG 2 cut(s) 69, 307
Sse9I AATT 1 cut(s) 36
SspMI CTAG 2 cut(s) 161, 463
StyD4I CCNGG 2 cut(s) 262, 431
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 3 cut(s) 70, 199, 412
TaqI TCGA 3 cut(s) 219, 414, 452
TaqII GACCGA 1 cut(s) 305
TasI AATT 1 cut(s) 36
TatI WGTACW 1 cut(s) 199
TfiI GAWTC 1 cut(s) 401
Tru1I TTAA 2 cut(s) 168, 174
Tru9I TTAA 2 cut(s) 168, 174
TscAI CASTG 3 cut(s) 73, 202, 329
TseI GCWGC 3 cut(s) 41, 56, 309
TspDTI ATGAA 2 cut(s) 17, 23
TspRI CASTG 3 cut(s) 73, 202, 329
XspI CTAG 2 cut(s) 161, 463
Zsp2I ATGCAT 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.