Rh2BG529600

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000974
Physical Location & Seq
Forward (+)
73890211 .. 73891671
1461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG529600.1

Sequence Viewer

Length: 333 bp
ATGAGACACTTGACTGAAGCGGCTGAACAGTATGGAACTATACCAACTAGCCTGCAATCACCTGCTGGATGTCAGCACAATGCAAACCGGGCTTCAAAGTACACCTTCAAAGTTGACAAGGATCTTCTAGGGTTCGACTTCAAAGCAGGAAAAAATGACGTGATTGTAGTCACAAAGGAGAATTTCGACATCTGCAACACCACGAAACCATTATATCAATACAAGGGTCCAGTATTTCTTAGAGCTGCCATTTCCGGCACATATTATCTCACTTTCAGCTTCGTGGGGCACTGCGCCAAGGGCCAAAAGGTAGCCATCTATTTTGCACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

110

Amino Acids

12.23

Weight (kDa)

9.17

Isoelectric Point (pI)

20.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 31 - 102 8.6e-09 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 70
AciI CCGC 1 cut(s) 20
AclWI GGATC 1 cut(s) 129
AcsI RAATTY 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 1 cut(s) 101
AgsI TTSAA 3 cut(s) 96, 109, 142
AjiI CACGTC 1 cut(s) 160
AluBI AGCT 2 cut(s) 245, 279
AluI AGCT 2 cut(s) 245, 279
AlwI GGATC 1 cut(s) 129
AoxI GGCC 1 cut(s) 301
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 1 cut(s) 181
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 2 cut(s) 227, 301
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 51
AvaII GGWCC 1 cut(s) 227
BaeGI GKGCMC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 232
BccI CCATC 1 cut(s) 323
BcnI CCSGG 1 cut(s) 89
BfaI CTAG 3 cut(s) 48, 128, 331
BfuAI ACCTGC 1 cut(s) 70
BisI GCNGC 2 cut(s) 21, 246
BlsI GCNGC 2 cut(s) 22, 247
Bme1390I CCNGG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 227
BmgBI CACGTC 1 cut(s) 160
BmgT120I GGNCC 2 cut(s) 227, 301
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 230
BseSI GKGCMC 1 cut(s) 291
BseXI GCAGC 1 cut(s) 232
BshFI GGCC 1 cut(s) 303
BsiSI CCGG 2 cut(s) 88, 255
BsnI GGCC 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 1 cut(s) 121
BspACI CCGC 1 cut(s) 20
BspANI GGCC 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 228
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 1 cut(s) 129
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 239
BstF5I GGATG 1 cut(s) 74
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 2 cut(s) 89, 300
BstSCI CCNGG 1 cut(s) 87
BstSLI GKGCMC 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BsuRI GGCC 1 cut(s) 303
BtrI CACGTC 1 cut(s) 160
BtsCI GGATG 1 cut(s) 74
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 289
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 53
CfoI GCGC 1 cut(s) 296
Cfr13I GGNCC 2 cut(s) 227, 301
Csp6I GTAC 1 cut(s) 100
CviJI RGCY 7 cut(s) 23, 51, 92, 245, 279, 303, 314
CviKI_1 RGCY 7 cut(s) 23, 51, 92, 245, 279, 303, 314
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 1 cut(s) 239
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 297
Eco47I GGWCC 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaiI YATR 4 cut(s) 33, 41, 214, 262
FalI AAGNNNNNCTT 2 cut(s) 89, 121
Fnu4HI GCNGC 2 cut(s) 21, 246
FokI GGATG 1 cut(s) 81
Fsp4HI GCNGC 2 cut(s) 21, 246
FspBI CTAG 3 cut(s) 48, 128, 331
GlaI GCGC 1 cut(s) 295
GluI GCNGC 2 cut(s) 21, 246
HaeIII GGCC 1 cut(s) 303
HapII CCGG 2 cut(s) 88, 255
HhaI GCGC 1 cut(s) 296
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HpaII CCGG 2 cut(s) 88, 255
HphI GGTGA 1 cut(s) 51
Hpy166II GTNNAC 2 cut(s) 102, 115
Hpy8I GTNNAC 2 cut(s) 102, 115
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 30
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 4 cut(s) 55, 83, 195, 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 300
HpyF3I CTNAG 1 cut(s) 239
HpySE526I ACGT 1 cut(s) 159
HspAI GCGC 1 cut(s) 294
Kzo9I GATC 1 cut(s) 121
LpnPI CCDG 7 cut(s) 51, 65, 75, 101, 132, 243, 268
Lsp1109I GCAGC 1 cut(s) 232
MaeI CTAG 3 cut(s) 48, 128, 331
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 169
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 1 cut(s) 116
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 1 cut(s) 181
MspI CCGG 2 cut(s) 88, 255
MspR9I CCNGG 1 cut(s) 89
MwoI GCNNNNNNNGC 2 cut(s) 89, 300
NciI CCSGG 1 cut(s) 89
NdeII GATC 1 cut(s) 121
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 169
PaqCI CACCTGC 1 cut(s) 70
PkrI GCNGC 2 cut(s) 22, 247
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 2 cut(s) 227, 301
PsuI RGATCY 1 cut(s) 121
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SatI GCNGC 2 cut(s) 21, 246
Sau3AI GATC 1 cut(s) 121
Sau96I GGNCC 2 cut(s) 227, 301
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 291
SetI ASST 6 cut(s) 64, 107, 162, 247, 281, 312
SinI GGWCC 1 cut(s) 227
Sse9I AATT 1 cut(s) 181
SsiI CCGC 1 cut(s) 20
SspMI CTAG 3 cut(s) 48, 128, 331
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 30
TaiI ACGT 1 cut(s) 162
TaqI TCGA 2 cut(s) 135, 186
TasI AATT 1 cut(s) 181
TatI WGTACW 1 cut(s) 99
TauI GCSGC 1 cut(s) 23
TscAI CASTG 1 cut(s) 296
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 169
TspRI CASTG 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 227
XapI RAATTY 1 cut(s) 181
XspI CTAG 3 cut(s) 48, 128, 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.