Rmu_sc0003275.1_g000020

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003275.1
OG0000974
Physical Location & Seq
Reverse (-)
70385 .. 70967
583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003275.1_g000020.1.cds

Sequence Viewer

Length: 375 bp
atgaatatgaagtacgtgttcgtgcttgtcatagcaatcgcagccatcgcagaaggcgcagaatacactgtaggagacgacatgggttggatggttcctcccactccggactattatgcttcatgggtttccaagtattactttgtggagaatgatactctagaaccaggtgaagttatggttatggcgagcgacacattttacttcacgtgcagctttggtcagcactgcgctaatgggcaaaagtttgccatttattttgcctctgcacctttgcctcccagtccaagtctgtgtccaagtgaatctgctactgctgatcaatctacggagtcccggccgttcaagtttgtatcggcaaagatgggtaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

124

Amino Acids

13.63

Weight (kDa)

4.35

Isoelectric Point (pI)

47.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 106
AcoI YGGCCR 1 cut(s) 338
AcvI CACGTG 1 cut(s) 210
AfaI GTAC 1 cut(s) 14
AflIII ACRYGT 1 cut(s) 15
AgsI TTSAA 1 cut(s) 346
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 1 cut(s) 216
AluI AGCT 1 cut(s) 216
Alw26I GTCTC 1 cut(s) 69
Aor13HI TCCGGA 1 cut(s) 106
AoxI GGCC 1 cut(s) 338
ApeKI GCWGC 2 cut(s) 41, 213
AspLEI GCGC 2 cut(s) 59, 233
AsuC2I CCSGG 1 cut(s) 337
AsuHPI GGTGA 1 cut(s) 182
BbrPI CACGTG 1 cut(s) 210
BbvI GCAGC 2 cut(s) 53, 225
BccI CCATC 3 cut(s) 53, 85, 358
BceAI ACGGC 1 cut(s) 325
BciT130I CCWGG 1 cut(s) 168
BclI TGATCA 1 cut(s) 319
BcnI CCSGG 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 2 cut(s) 161, 373
BfmI CTRYAG 1 cut(s) 69
BisI GCNGC 2 cut(s) 42, 214
BlsI GCNGC 2 cut(s) 43, 215
Bme1390I CCNGG 2 cut(s) 168, 337
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 2 cut(s) 168, 337
BmrI ACTGGG 1 cut(s) 276
BmuI ACTGGG 1 cut(s) 276
BpuMI CCSGG 1 cut(s) 337
BsaAI YACGTR 2 cut(s) 16, 210
BsaWI WCCGGW 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 282
BseAI TCCGGA 1 cut(s) 106
BseBI CCWGG 1 cut(s) 168
BseGI GGATG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 282
BseX3I CGGCCG 1 cut(s) 338
BseXI GCAGC 2 cut(s) 53, 225
BsgI GTGCAG 2 cut(s) 232, 252
Bsh1285I CGRYCG 1 cut(s) 341
BshFI GGCC 1 cut(s) 340
BsiEI CGRYCG 1 cut(s) 341
BsiSI CCGG 2 cut(s) 107, 337
BslFI GGGAC 1 cut(s) 319
BsmAI GTCTC 1 cut(s) 69
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 319
BsnI GGCC 1 cut(s) 340
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 1 cut(s) 319
BspANI GGCC 1 cut(s) 340
BspEI TCCGGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 96
BsrI ACTGG 1 cut(s) 282
BssMI GATC 1 cut(s) 319
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 70
BstBAI YACGTR 2 cut(s) 16, 210
BstC8I GCNNGC 1 cut(s) 190
BstF5I GGATG 1 cut(s) 96
BstHHI GCGC 2 cut(s) 59, 233
BstKTI GATC 1 cut(s) 322
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 1 cut(s) 319
BstMCI CGRYCG 1 cut(s) 341
BstMWI GCNNNNNNNGC 3 cut(s) 41, 47, 56
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 2 cut(s) 166, 335
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 2 cut(s) 53, 225
BstZI CGGCCG 1 cut(s) 338
BsuRI GGCC 1 cut(s) 340
BtgZI GCGATG 1 cut(s) 31
BtsCI GGATG 1 cut(s) 96
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 2 cut(s) 66, 226
Cac8I GCNNGC 1 cut(s) 190
CfoI GCGC 2 cut(s) 59, 233
CsiI ACCWGGT 1 cut(s) 166
Csp6I GTAC 1 cut(s) 13
CviAII CATG 2 cut(s) 82, 123
CviJI RGCY 3 cut(s) 44, 216, 340
CviKI_1 RGCY 3 cut(s) 44, 216, 340
CviQI GTAC 1 cut(s) 13
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
EaeI YGGCCR 1 cut(s) 338
EagI CGGCCG 1 cut(s) 338
EclXI CGGCCG 1 cut(s) 338
Eco52I CGGCCG 1 cut(s) 338
Eco72I CACGTG 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 166
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 2 cut(s) 85, 126
FaiI YATR 7 cut(s) 8, 32, 83, 117, 124, 179, 185
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FaqI GGGAC 1 cut(s) 319
FatI CATG 2 cut(s) 81, 122
FbaI TGATCA 1 cut(s) 319
Fnu4HI GCNGC 2 cut(s) 42, 214
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 2 cut(s) 42, 214
FspBI CTAG 2 cut(s) 161, 373
GlaI GCGC 2 cut(s) 58, 232
GluI GCNGC 2 cut(s) 42, 214
HaeIII GGCC 1 cut(s) 340
HapII CCGG 2 cut(s) 107, 337
HhaI GCGC 2 cut(s) 59, 233
Hin1II CATG 2 cut(s) 85, 126
Hin6I GCGC 2 cut(s) 57, 231
HinP1I GCGC 2 cut(s) 57, 231
HinfI GANTC 2 cut(s) 305, 332
HpaII CCGG 2 cut(s) 107, 337
HphI GGTGA 1 cut(s) 182
Hpy188III TCNNGA 2 cut(s) 107, 161
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4IV ACGT 2 cut(s) 15, 209
HpyCH4V TGCA 2 cut(s) 213, 269
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 47, 56
HpySE526I ACGT 2 cut(s) 15, 209
Hsp92II CATG 2 cut(s) 85, 126
HspAI GCGC 2 cut(s) 57, 231
Kpn2I TCCGGA 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 1 cut(s) 319
LpnPI CCDG 5 cut(s) 120, 153, 180, 295, 350
Lsp1109I GCAGC 2 cut(s) 53, 225
MabI ACCWGGT 1 cut(s) 166
MaeI CTAG 2 cut(s) 161, 373
MaeII ACGT 2 cut(s) 15, 209
MaeIII GTNAC 1 cut(s) 368
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 3 cut(s) 108, 274, 288
MroI TCCGGA 1 cut(s) 106
MspI CCGG 2 cut(s) 107, 337
MspR9I CCNGG 2 cut(s) 168, 337
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 41, 47, 56
NciI CCSGG 1 cut(s) 337
NdeII GATC 1 cut(s) 319
NlaIII CATG 2 cut(s) 85, 126
NlaIV GGNNCC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 305
PkrI GCNGC 2 cut(s) 43, 215
PleI GAGTC 1 cut(s) 340
PmaCI CACGTG 1 cut(s) 210
PmlI CACGTG 1 cut(s) 210
PpsI GAGTC 1 cut(s) 340
Ppu21I YACGTR 2 cut(s) 16, 210
Psp6I CCWGG 1 cut(s) 166
PspCI CACGTG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 96
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SatI GCNGC 2 cut(s) 42, 214
Sau3AI GATC 1 cut(s) 319
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 2 cut(s) 168, 337
SetI ASST 5 cut(s) 18, 172, 212, 218, 274
SexAI ACCWGGT 1 cut(s) 166
SfcI CTRYAG 1 cut(s) 69
SspMI CTAG 2 cut(s) 161, 373
StyD4I CCNGG 2 cut(s) 166, 335
TaaI ACNGT 1 cut(s) 70
TaiI ACGT 2 cut(s) 18, 212
TfiI GAWTC 1 cut(s) 305
TscAI CASTG 2 cut(s) 73, 233
TseI GCWGC 2 cut(s) 41, 213
TspDTI ATGAA 3 cut(s) 17, 23, 111
TspGWI ACGGA 1 cut(s) 344
TspRI CASTG 2 cut(s) 73, 233
XbaI TCTAGA 1 cut(s) 160
XspI CTAG 2 cut(s) 161, 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.