Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000974

Physical Location & Seq

Genomic Coordinates Reverse (-)

2732997 .. 2733560

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46347

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAAGTATGTGATCGTGCTTGTCATAGCAATTGCAGCAATCGCAGAAGGCGCAATATACACTGTAGGAGACGACATGGGCTGGATGGTTCCTCCCACTCCCGACTATTATGCTTCATGGGTTTCCAAGTATTACTTTGTGGAGAACGATACTCTAGTGTTCAACTTTGAAGAAGGACAGCATGACATCACTGTACTAACCAAGGAAGACTTCGACTCCTGCAACATGACGAATCCCTTGTTTCAAACCCCAGAACCAGGTGCAGTTTCGGTTGAGGCGAGCGACACGTTTTACTTCACGTGCAGCTTTGGTCAGCACTGCGCTAAAGGGCAAAAGTTCGCCATTTATTTTGCCCCTGCACCTTTGCCTCCCAGTCCGAGTCCGAGTGCATCTGCTGCTGCTGATCAATCTCTGGAGACCCGACTGTTCAAGTTTGTGACGGAAAAGAAGGGTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

152

Amino Acids

16.76

Weight (kDa)

4.46

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	29 - 111	2.8e-13	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000974)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02910 FvH4_1g02970 FvH4_6g40671
malus_domestica	MD02G1028900.v1.1 MD02G1029100.v1.1 MD15G1170500.v1.1
prunus_persica	Prupe.7G245800_v2.0.a1 Prupe.7G245900_v2.0.a1 Prupe.7G246100_v2.0.a1
pyrus_communis	pycom02g02370 pycom02g02380 pycom02g02390 pycom02g02400 pycom15g15200
rosa_chinensis	RchiOBHm_Chr2g0088061 RchiOBHm_Chr2g0088081 RchiOBHm_Chr2g0156091 RchiOBHm_Chr2g0156121 RchiOBHm_Chr2g0156131 RchiOBHm_Chr5g0060121 RchiOBHm_Chr5g0060181
rosa_multiflora	Rmu_co8398493.1_g000001 Rmu_sc0000260.1_g000020 Rmu_sc0000493.1_g000045 Rmu_sc0003275.1_g000013 Rmu_sc0003275.1_g000020 Rmu_sc0003275.1_g000042 Rmu_sc0011922.1_g000011
rosa_roxburghii	Rroxscaffold_1G00020520 Rroxscaffold_1G00020540 Rroxscaffold_2G00152970 Rroxscaffold_2G00152990 Rroxscaffold_2G00153000 Rroxscaffold_2G00153020
rosa_rugosa	Rorug01G0480500 Rorug01G0480600 Rorug01G0480800 Rorug02G0451600 Rorug02G0451600 Rorug05G0328200
rosa_samantha	Rh2AG035400 Rh2AG035700 Rh2BG034400 Rh2BG034600 Rh2BG034900 Rh2BG529600 Rh2CG035600 Rh2CG036000 Rh2CG503200 Rh2DG035100 Rh2DG035500 Rh5AG392000 Rh5AG392100 Rh5BG404500 Rh5BG404600 Rh5CG428200 Rh5CG428600 Rh5DG420300
rosa_wichuraiana	Rw2G002780 Rw2G002790 Rw2G002810 Rw5G036960 Rw5G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcvI	CACGTG	1 cut(s)	300
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	257
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	4 cut(s)	163, 170, 245, 430
AjnI	CCWGG	1 cut(s)	256
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	1 cut(s)	306
AluI	AGCT	1 cut(s)	306
Alw26I	GTCTC	2 cut(s)	63, 410
ApeKI	GCWGC	4 cut(s)	35, 303, 395, 398
AspLEI	GCGC	2 cut(s)	53, 323
BaeI	ACNNNNGTAYC	2 cut(s)	141, 174
BbrPI	CACGTG	1 cut(s)	300
BbsI	GAAGAC	1 cut(s)	213
BbvI	GCAGC	4 cut(s)	47, 315, 382, 385
BccI	CCATC	1 cut(s)	79
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciT130I	CCWGG	1 cut(s)	258
BclI	TGATCA	1 cut(s)	403
BcoDI	GTCTC	2 cut(s)	63, 410
BfaI	CTAG	2 cut(s)	155, 457
BfmI	CTRYAG	1 cut(s)	63
BisI	GCNGC	4 cut(s)	36, 304, 396, 399
BlsI	GCNGC	4 cut(s)	37, 305, 397, 400
Bme1390I	CCNGG	1 cut(s)	258
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	258
BmrI	ACTGGG	1 cut(s)	366
BmsI	GCATC	1 cut(s)	398
BmuI	ACTGGG	1 cut(s)	366
BpiI	GAAGAC	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	434
BsaAI	YACGTR	1 cut(s)	300
BsaI	GGTCTC	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	201
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseNI	ACTGG	1 cut(s)	372
BseXI	GCAGC	4 cut(s)	47, 315, 382, 385
BsgI	GTGCAG	3 cut(s)	282, 322, 342
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmAI	GTCTC	2 cut(s)	63, 410
BsmBI	CGTCTC	1 cut(s)	63
Bso31I	GGTCTC	1 cut(s)	410
Bsp143I	GATC	2 cut(s)	12, 403
BspLI	GGNNCC	1 cut(s)	90
BspTNI	GGTCTC	1 cut(s)	410
BsrI	ACTGG	1 cut(s)	372
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	2 cut(s)	12, 403
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	3 cut(s)	64, 193, 426
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstBAI	YACGTR	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	280
BstF5I	GGATG	1 cut(s)	90
BstHHI	GCGC	2 cut(s)	53, 323
BstKTI	GATC	2 cut(s)	15, 406
BstMAI	GTCTC	2 cut(s)	63, 410
BstMBI	GATC	2 cut(s)	12, 403
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 41, 50, 395
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	256
BstSFI	CTRYAG	1 cut(s)	63
BstV1I	GCAGC	4 cut(s)	47, 315, 382, 385
BstV2I	GAAGAC	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	90
BtsI	GCAGTG	1 cut(s)	316
BtsIMutI	CAGTG	3 cut(s)	60, 189, 316
Cac8I	GCNNGC	1 cut(s)	280
CfoI	GCGC	2 cut(s)	53, 323
CsiI	ACCWGGT	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	4 cut(s)	76, 117, 182, 226
CviJI	RGCY	2 cut(s)	81, 306
CviKI_1	RGCY	2 cut(s)	81, 306
CviQI	GTAC	1 cut(s)	194
DpnI	GATC	2 cut(s)	14, 405
DpnII	GATC	2 cut(s)	12, 403
Eco130I	CCWWGG	1 cut(s)	201
Eco31I	GGTCTC	1 cut(s)	410
Eco72I	CACGTG	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	4 cut(s)	79, 120, 185, 229
FaiI	YATR	8 cut(s)	9, 26, 58, 77, 111, 118, 183, 227
FalI	AAGNNNNNCTT	4 cut(s)	119, 151, 194, 226
FatI	CATG	4 cut(s)	75, 116, 181, 225
FbaI	TGATCA	1 cut(s)	403
Fnu4HI	GCNGC	4 cut(s)	36, 304, 396, 399
FokI	GGATG	1 cut(s)	97
Fsp4HI	GCNGC	4 cut(s)	36, 304, 396, 399
FspBI	CTAG	2 cut(s)	155, 457
GlaI	GCGC	2 cut(s)	52, 322
GluI	GCNGC	4 cut(s)	36, 304, 396, 399
GsuI	CTGGAG	1 cut(s)	434
HhaI	GCGC	2 cut(s)	53, 323
Hin1II	CATG	4 cut(s)	79, 120, 185, 229
Hin6I	GCGC	2 cut(s)	51, 321
HinP1I	GCGC	2 cut(s)	51, 321
HinfI	GANTC	3 cut(s)	215, 232, 379
Hpy188I	TCNGA	2 cut(s)	378, 384
Hpy188III	TCNNGA	2 cut(s)	101, 413
HpyAV	CCTTC	3 cut(s)	41, 167, 442
HpyCH4III	ACNGT	3 cut(s)	64, 193, 426
HpyCH4IV	ACGT	2 cut(s)	287, 299
HpyCH4V	TGCA	6 cut(s)	35, 222, 263, 303, 359, 389
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 41, 50, 395
HpySE526I	ACGT	2 cut(s)	287, 299
Hsp92II	CATG	4 cut(s)	79, 120, 185, 229
HspAI	GCGC	2 cut(s)	51, 321
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	2 cut(s)	12, 403
LpnPI	CCDG	8 cut(s)	67, 232, 243, 264, 270, 369, 385, 398
Lsp1109I	GCAGC	4 cut(s)	47, 315, 382, 385
LweI	GCATC	1 cut(s)	398
MabI	ACCWGGT	1 cut(s)	256
MaeI	CTAG	2 cut(s)	155, 457
MaeII	ACGT	2 cut(s)	287, 299
MaeIII	GTNAC	2 cut(s)	436, 452
MalI	GATC	2 cut(s)	14, 405
MboI	GATC	2 cut(s)	12, 403
MboII	GAAGA	2 cut(s)	182, 218
MfeI	CAATTG	1 cut(s)	30
MluCI	AATT	1 cut(s)	30
MlyI	GAGTC	2 cut(s)	209, 388
MnlI	CCTC	3 cut(s)	102, 268, 378
MspR9I	CCNGG	1 cut(s)	258
MunI	CAATTG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	4 cut(s)	35, 41, 50, 395
NdeII	GATC	2 cut(s)	12, 403
NlaIII	CATG	4 cut(s)	79, 120, 185, 229
NlaIV	GGNNCC	1 cut(s)	90
NmuCI	GTSAC	1 cut(s)	436
PcsI	WCGNNNNNNNCGW	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	4 cut(s)	37, 305, 397, 400
PleI	GAGTC	2 cut(s)	209, 387
PmaCI	CACGTG	1 cut(s)	300
PmlI	CACGTG	1 cut(s)	300
PpsI	GAGTC	2 cut(s)	209, 387
Ppu21I	YACGTR	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	256
PspCI	CACGTG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	90
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SatI	GCNGC	4 cut(s)	36, 304, 396, 399
Sau3AI	GATC	2 cut(s)	12, 403
SchI	GAGTC	2 cut(s)	209, 388
ScrFI	CCNGG	1 cut(s)	258
SetI	ASST	5 cut(s)	262, 290, 302, 308, 364
SexAI	ACCWGGT	1 cut(s)	256
SfaNI	GCATC	1 cut(s)	398
SfcI	CTRYAG	1 cut(s)	63
Sse9I	AATT	1 cut(s)	30
SspMI	CTAG	2 cut(s)	155, 457
StyD4I	CCNGG	1 cut(s)	256
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	3 cut(s)	64, 193, 426
TaiI	ACGT	2 cut(s)	290, 302
TaqI	TCGA	1 cut(s)	213
TasI	AATT	1 cut(s)	30
TatI	WGTACW	1 cut(s)	193
TfiI	GAWTC	1 cut(s)	232
TscAI	CASTG	3 cut(s)	67, 196, 323
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	4 cut(s)	35, 303, 395, 398
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	2 cut(s)	17, 105
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	3 cut(s)	67, 196, 323
XspI	CTAG	2 cut(s)	155, 457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.