Rw2G002790

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000974
Physical Location & Seq
Reverse (-)
2525200 .. 2525782
583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G002790.1

Sequence Viewer

Length: 432 bp
ATGAATATGAAGTACGTGTTCGTGCTTGTCATAGCAATCGCAGCCATCGCAGAAGGCGCAGAATACACTGTAGGAGACGACATGGGTTGGATGGTTCCTCCCACTCCGGACTATTATGCTTCATGGGTTTCCAAGTATTACTTTGTGGAGAATGATACTCTAGTGTTTAACTTTGAACAAGGAATACATGACATCACTGTACTAACCAAGGAAGACTTCGACGCCTGTGAAGTTATGGTTATGGCGAGCGACACATTTTACTTCACGTGCAGCTTTGGTCAGCACTGCGCTAATGGGCAAAAGTTTGCCATTTATTTTGCCTCTGCACCTTTGCCTCCCAGTCCAAGTCTGTGTCCAAGTGAATCTGCTACTGCTGATCAATCTACGGAGTCCCGGCCGTTCAAGTTTGTATCGGCAAAGATGGGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

143

Amino Acids

15.87

Weight (kDa)

4.3

Isoelectric Point (pI)

46.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 31 - 80 6e-06 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 106
AcoI YGGCCR 1 cut(s) 395
AcvI CACGTG 1 cut(s) 267
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 2 cut(s) 14, 201
AflIII ACRYGT 1 cut(s) 15
AgsI TTSAA 2 cut(s) 176, 403
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 1 cut(s) 273
AluI AGCT 1 cut(s) 273
Alw26I GTCTC 1 cut(s) 69
Aor13HI TCCGGA 1 cut(s) 106
AoxI GGCC 1 cut(s) 395
ApeKI GCWGC 2 cut(s) 41, 270
AspLEI GCGC 2 cut(s) 59, 290
AsuC2I CCSGG 1 cut(s) 394
BaeI ACNNNNGTAYC 2 cut(s) 147, 180
BbrPI CACGTG 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 219
BbvI GCAGC 2 cut(s) 53, 282
BccI CCATC 3 cut(s) 53, 85, 415
BceAI ACGGC 1 cut(s) 382
BclI TGATCA 1 cut(s) 376
BcnI CCSGG 1 cut(s) 394
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 2 cut(s) 161, 430
BfmI CTRYAG 1 cut(s) 69
BisI GCNGC 2 cut(s) 42, 271
BlsI GCNGC 2 cut(s) 43, 272
Bme1390I CCNGG 1 cut(s) 394
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 1 cut(s) 394
BmrI ACTGGG 1 cut(s) 333
BmuI ACTGGG 1 cut(s) 333
BpiI GAAGAC 1 cut(s) 219
BpuMI CCSGG 1 cut(s) 394
BsaAI YACGTR 2 cut(s) 16, 267
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 339
BseAI TCCGGA 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 339
BseX3I CGGCCG 1 cut(s) 395
BseXI GCAGC 2 cut(s) 53, 282
BsgI GTGCAG 2 cut(s) 289, 309
Bsh1285I CGRYCG 1 cut(s) 398
BshFI GGCC 1 cut(s) 397
BsiEI CGRYCG 1 cut(s) 398
BsiSI CCGG 2 cut(s) 107, 394
BslFI GGGAC 1 cut(s) 376
BsmAI GTCTC 1 cut(s) 69
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 376
BsnI GGCC 1 cut(s) 397
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 1 cut(s) 376
BspANI GGCC 1 cut(s) 397
BspEI TCCGGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 96
BsrI ACTGG 1 cut(s) 339
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 1 cut(s) 376
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 70, 199
BstACI GRCGYC 1 cut(s) 222
BstBAI YACGTR 2 cut(s) 16, 267
BstC8I GCNNGC 1 cut(s) 247
BstF5I GGATG 1 cut(s) 96
BstHHI GCGC 2 cut(s) 59, 290
BstKTI GATC 1 cut(s) 379
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 1 cut(s) 376
BstMCI CGRYCG 1 cut(s) 398
BstMWI GCNNNNNNNGC 3 cut(s) 41, 47, 56
BstSCI CCNGG 1 cut(s) 392
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 2 cut(s) 53, 282
BstV2I GAAGAC 1 cut(s) 219
BstZI CGGCCG 1 cut(s) 395
BsuRI GGCC 1 cut(s) 397
BtgZI GCGATG 1 cut(s) 31
BtsCI GGATG 1 cut(s) 96
BtsI GCAGTG 1 cut(s) 283
BtsIMutI CAGTG 3 cut(s) 66, 195, 283
Cac8I GCNNGC 1 cut(s) 247
CfoI GCGC 2 cut(s) 59, 290
CseI GACGC 1 cut(s) 230
Csp6I GTAC 2 cut(s) 13, 200
CviAII CATG 3 cut(s) 82, 123, 188
CviJI RGCY 3 cut(s) 44, 273, 397
CviKI_1 RGCY 3 cut(s) 44, 273, 397
CviQI GTAC 2 cut(s) 13, 200
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
EaeI YGGCCR 1 cut(s) 395
EagI CGGCCG 1 cut(s) 395
EclXI CGGCCG 1 cut(s) 395
Eco130I CCWWGG 1 cut(s) 207
Eco52I CGGCCG 1 cut(s) 395
Eco72I CACGTG 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 3 cut(s) 85, 126, 191
FaiI YATR 8 cut(s) 8, 32, 83, 117, 124, 189, 236, 242
FalI AAGNNNNNCTT 4 cut(s) 125, 157, 200, 232
FaqI GGGAC 1 cut(s) 376
FatI CATG 3 cut(s) 81, 122, 187
FbaI TGATCA 1 cut(s) 376
Fnu4HI GCNGC 2 cut(s) 42, 271
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 2 cut(s) 42, 271
FspBI CTAG 2 cut(s) 161, 430
GlaI GCGC 2 cut(s) 58, 289
GluI GCNGC 2 cut(s) 42, 271
HaeIII GGCC 1 cut(s) 397
HapII CCGG 2 cut(s) 107, 394
HgaI GACGC 1 cut(s) 230
HhaI GCGC 2 cut(s) 59, 290
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 3 cut(s) 85, 126, 191
Hin6I GCGC 2 cut(s) 57, 288
HinP1I GCGC 2 cut(s) 57, 288
HinfI GANTC 2 cut(s) 362, 389
HpaII CCGG 2 cut(s) 107, 394
Hpy188III TCNNGA 1 cut(s) 107
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 2 cut(s) 70, 199
HpyCH4IV ACGT 2 cut(s) 15, 266
HpyCH4V TGCA 2 cut(s) 270, 326
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 47, 56
HpySE526I ACGT 2 cut(s) 15, 266
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 3 cut(s) 85, 126, 191
HspAI GCGC 2 cut(s) 57, 288
Kpn2I TCCGGA 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 1 cut(s) 376
LpnPI CCDG 4 cut(s) 120, 238, 352, 407
Lsp1109I GCAGC 2 cut(s) 53, 282
MaeI CTAG 2 cut(s) 161, 430
MaeII ACGT 2 cut(s) 15, 266
MaeIII GTNAC 1 cut(s) 425
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
MboII GAAGA 1 cut(s) 224
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 3 cut(s) 108, 331, 345
MroI TCCGGA 1 cut(s) 106
MseI TTAA 1 cut(s) 168
MspI CCGG 2 cut(s) 107, 394
MspR9I CCNGG 1 cut(s) 394
MwoI GCNNNNNNNGC 3 cut(s) 41, 47, 56
NciI CCSGG 1 cut(s) 394
NdeII GATC 1 cut(s) 376
NlaIII CATG 3 cut(s) 85, 126, 191
NlaIV GGNNCC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 362
PkrI GCNGC 2 cut(s) 43, 272
PleI GAGTC 1 cut(s) 397
PmaCI CACGTG 1 cut(s) 267
PmlI CACGTG 1 cut(s) 267
PpsI GAGTC 1 cut(s) 397
Ppu21I YACGTR 2 cut(s) 16, 267
PspCI CACGTG 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 96
PsrI GAACNNNNNNTAC 2 cut(s) 168, 200
RsaI GTAC 2 cut(s) 14, 201
RsaNI GTAC 2 cut(s) 13, 200
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 2 cut(s) 42, 271
Sau3AI GATC 1 cut(s) 376
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 1 cut(s) 394
SetI ASST 4 cut(s) 18, 269, 275, 331
SfcI CTRYAG 1 cut(s) 69
SspMI CTAG 2 cut(s) 161, 430
StyD4I CCNGG 1 cut(s) 392
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 70, 199
TaiI ACGT 2 cut(s) 18, 269
TaqI TCGA 1 cut(s) 219
TatI WGTACW 1 cut(s) 199
TfiI GAWTC 1 cut(s) 362
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 3 cut(s) 73, 202, 290
TseI GCWGC 2 cut(s) 41, 270
TspDTI ATGAA 3 cut(s) 17, 23, 111
TspGWI ACGGA 1 cut(s) 401
TspRI CASTG 3 cut(s) 73, 202, 290
XspI CTAG 2 cut(s) 161, 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.