Prupe.7G245800_v2.0.a1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000974
Physical Location & Seq
Forward (+)
20941263 .. 20942151
889 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G245800.1

Sequence Viewer

Length: 522 bp
ATGGTGGCTAAAAGCATGAATGTGAGCAATGTGCTGGTCCTTGTTATAGCAGCGGCAGTATTCACGCTACATGGAACAGAAGCTGCACAATACACAGTAGGTGACGAGCTCGGTTGGACCATTCCTCCGGGTGGCGCCGCCACTTACGCTTCATGGGCTGCCAAGCATAGTTTGGTAGTTTCTGATATTCTAACATTTAACTTTGCGGTTGGAGAACAAGATTTGGCTTTAGTAACCAAGGAGGATTTTGATGCGTGCAACACAGCCGAACCGTTGTTTGTGTTCCAAGAACCAGGAGACTTTATATTTGAAAGTGAGGGCATGTATTATTTGACCTGCACCTTCGCCGGCCATTGCGCCAAAGGCCAAAAGATTGCCCTCTACTTCGCTCCCTCAGGCGGATCTCCATCTCCAAGTCCCGCTGCAAGTCAAAGTGCTGATGATGCTGCCGCGGTCAAATTTGTGTCCAAGAAAGAGTATGGCTTCAAGAAATCAATACCTGTAACGATGAAGTCCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

174

Amino Acids

18.31

Weight (kDa)

4.92

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 344
AccB1I GGYRCC 1 cut(s) 134
AccII CGCG 1 cut(s) 452
AciI CCGC 7 cut(s) 53, 138, 206, 399, 420, 450, 452
AclWI GGATC 1 cut(s) 409
AcoI YGGCCR 1 cut(s) 349
AcsI RAATTY 1 cut(s) 458
AcyI GRCGYC 1 cut(s) 135
AfiI CCNNNNNNNGG 2 cut(s) 131, 398
AgsI TTSAA 2 cut(s) 311, 487
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 2 cut(s) 83, 109
AluI AGCT 2 cut(s) 83, 109
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 1 cut(s) 291
AlwI GGATC 1 cut(s) 409
AlwNI CAGNNNCTG 1 cut(s) 83
AoxI GGCC 2 cut(s) 349, 364
ApeKI GCWGC 5 cut(s) 50, 83, 158, 422, 446
ApoI RAATTY 1 cut(s) 458
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AspLEI GCGC 2 cut(s) 137, 359
AspS9I GGNCC 2 cut(s) 37, 117
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 113
AvaII GGWCC 2 cut(s) 37, 117
AxyI CCTNAGG 1 cut(s) 394
BanI GGYRCC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 5 cut(s) 62, 70, 145, 409, 433
BccI CCATC 1 cut(s) 415
BciT130I CCWGG 1 cut(s) 294
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 291
BfoI RGCGCY 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 344
BisI GCNGC 8 cut(s) 51, 54, 84, 138, 159, 423, 447, 450
BlsI GCNGC 8 cut(s) 52, 55, 85, 139, 160, 424, 448, 451
Bme1390I CCNGG 2 cut(s) 129, 294
Bme18I GGWCC 2 cut(s) 37, 117
BmgT120I GGNCC 2 cut(s) 37, 117
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 2 cut(s) 129, 294
BmsI GCATC 2 cut(s) 241, 433
BpuMI CCSGG 1 cut(s) 129
BsaBI GATNNNNATC 1 cut(s) 406
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 237, 450
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 398
Bse118I RCCGGY 1 cut(s) 347
Bse21I CCTNAGG 1 cut(s) 394
Bse3DI GCAATG 2 cut(s) 34, 352
Bse8I GATNNNNATC 1 cut(s) 406
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 237, 450
BseJI GATNNNNATC 1 cut(s) 406
BseLI CCNNNNNNNGG 2 cut(s) 131, 398
BseMI GCAATG 2 cut(s) 34, 352
BseMII CTCAG 1 cut(s) 408
BseXI GCAGC 5 cut(s) 62, 70, 145, 409, 433
BsgI GTGCAG 2 cut(s) 69, 322
Bsh1236I CGCG 1 cut(s) 452
BshFI GGCC 2 cut(s) 351, 366
BshNI GGYRCC 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 111
BsiSI CCGG 2 cut(s) 128, 348
BslFI GGGAC 2 cut(s) 402, 499
BslI CCNNNNNNNGG 2 cut(s) 131, 398
BsmAI GTCTC 1 cut(s) 291
BsmFI GGGAC 2 cut(s) 402, 499
BsnI GGCC 2 cut(s) 351, 366
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 1 cut(s) 401
BspACI CCGC 7 cut(s) 53, 138, 206, 399, 420, 450, 452
BspANI GGCC 2 cut(s) 351, 366
BspCNI CTCAG 1 cut(s) 407
BspFNI CGCG 1 cut(s) 452
BspLI GGNNCC 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 344
BspPI GGATC 1 cut(s) 409
BspT107I GGYRCC 1 cut(s) 134
BsrDI GCAATG 2 cut(s) 34, 352
BsrFI RCCGGY 1 cut(s) 347
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 2 cut(s) 237, 450
BssMI GATC 1 cut(s) 401
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 2 cut(s) 97, 273
BstACI GRCGYC 1 cut(s) 135
BstC8I GCNNGC 2 cut(s) 256, 349
BstDEI CTNAG 1 cut(s) 394
BstDSI CCRYGG 1 cut(s) 450
BstFNI CGCG 1 cut(s) 452
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 2 cut(s) 137, 359
BstKTI GATC 1 cut(s) 404
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 1 cut(s) 401
BstMWI GCNNNNNNNGC 4 cut(s) 146, 155, 363, 443
BstNI CCWGG 1 cut(s) 294
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 2 cut(s) 127, 292
BstUI CGCG 1 cut(s) 452
BstV1I GCAGC 5 cut(s) 62, 70, 145, 409, 433
BstX2I RGATCY 1 cut(s) 401
BstYI RGATCY 1 cut(s) 401
Bsu36I CCTNAGG 1 cut(s) 394
BsuRI GGCC 2 cut(s) 351, 366
BtgI CCRYGG 1 cut(s) 450
BveI ACCTGC 1 cut(s) 344
Cac8I GCNNGC 2 cut(s) 256, 349
CaiI CAGNNNCTG 1 cut(s) 83
CfoI GCGC 2 cut(s) 137, 359
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 2 cut(s) 37, 117
Cfr42I CCGCGG 1 cut(s) 453
CviAII CATG 4 cut(s) 16, 71, 153, 322
CviJI RGCY 9 cut(s) 8, 83, 109, 158, 227, 266, 351, 366, 483
CviKI_1 RGCY 9 cut(s) 8, 83, 109, 158, 227, 266, 351, 366, 483
DdeI CTNAG 1 cut(s) 394
DinI GGCGCC 1 cut(s) 136
DpnI GATC 1 cut(s) 403
DpnII GATC 1 cut(s) 401
EaeI YGGCCR 1 cut(s) 349
EciI GGCGGA 1 cut(s) 414
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 111
Eco47I GGWCC 2 cut(s) 37, 117
Eco53kI GAGCTC 1 cut(s) 109
Eco81I CCTNAGG 1 cut(s) 394
EcoICRI GAGCTC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 237
EcoT38I GRGCYC 1 cut(s) 111
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 4 cut(s) 19, 74, 156, 325
FaiI YATR 8 cut(s) 17, 47, 72, 154, 168, 305, 323, 480
FaqI GGGAC 2 cut(s) 402, 499
FatI CATG 4 cut(s) 15, 70, 152, 321
FauI CCCGC 1 cut(s) 427
Fnu4HI GCNGC 8 cut(s) 51, 54, 84, 138, 159, 423, 447, 450
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 8 cut(s) 51, 54, 84, 138, 159, 423, 447, 450
GlaI GCGC 2 cut(s) 136, 358
GluI GCNGC 8 cut(s) 51, 54, 84, 138, 159, 423, 447, 450
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 2 cut(s) 351, 366
HapII CCGG 2 cut(s) 128, 348
HhaI GCGC 2 cut(s) 137, 359
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 4 cut(s) 19, 74, 156, 325
Hin6I GCGC 2 cut(s) 135, 357
HinP1I GCGC 2 cut(s) 135, 357
HpaII CCGG 2 cut(s) 128, 348
HphI GGTGA 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 1 cut(s) 487
HpyAV CCTTC 1 cut(s) 352
HpyCH4III ACNGT 2 cut(s) 97, 273
HpyCH4V TGCA 4 cut(s) 86, 258, 339, 425
HpyF10VI GCNNNNNNNGC 4 cut(s) 146, 155, 363, 443
HpyF3I CTNAG 1 cut(s) 394
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 4 cut(s) 19, 74, 156, 325
HspAI GCGC 2 cut(s) 135, 357
KasI GGCGCC 1 cut(s) 134
KroI GCCGGC 1 cut(s) 347
KroNI GCCGGC 1 cut(s) 349
KspI CCGCGG 1 cut(s) 453
Kzo9I GATC 1 cut(s) 401
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 8 cut(s) 20, 141, 279, 306, 349, 361, 381, 513
Lsp1109I GCAGC 5 cut(s) 62, 70, 145, 409, 433
LweI GCATC 2 cut(s) 241, 433
MaeIII GTNAC 3 cut(s) 101, 232, 502
MalI GATC 1 cut(s) 403
MboI GATC 1 cut(s) 401
MflI RGATCY 1 cut(s) 401
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 1 cut(s) 458
Mly113I GGCGCC 1 cut(s) 135
MmeI TCCRAC 2 cut(s) 95, 190
MnlI CCTC 5 cut(s) 135, 235, 310, 389, 403
MroNI GCCGGC 1 cut(s) 347
MseI TTAA 1 cut(s) 198
MslI CAYNNNNRTG 1 cut(s) 20
MspA1I CMGCKG 3 cut(s) 53, 422, 452
MspI CCGG 2 cut(s) 128, 348
MspR9I CCNGG 2 cut(s) 129, 294
MvaI CCWGG 1 cut(s) 294
MvnI CGCG 1 cut(s) 452
MwoI GCNNNNNNNGC 4 cut(s) 146, 155, 363, 443
NaeI GCCGGC 1 cut(s) 349
NarI GGCGCC 1 cut(s) 135
NciI CCSGG 1 cut(s) 129
NdeII GATC 1 cut(s) 401
NgoMIV GCCGGC 1 cut(s) 347
NlaIII CATG 4 cut(s) 19, 74, 156, 325
NlaIV GGNNCC 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 101
NspI RCATGY 1 cut(s) 325
PdiI GCCGGC 1 cut(s) 349
PkrI GCNGC 8 cut(s) 52, 55, 85, 139, 160, 424, 448, 451
PluTI GGCGCC 1 cut(s) 138
Psp124BI GAGCTC 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 136
PspPI GGNCC 2 cut(s) 37, 117
PstNI CAGNNNCTG 1 cut(s) 83
PsuI RGATCY 1 cut(s) 401
RseI CAYNNNNRTG 1 cut(s) 20
SacI GAGCTC 1 cut(s) 111
SacII CCGCGG 1 cut(s) 453
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 8 cut(s) 51, 54, 84, 138, 159, 423, 447, 450
Sau3AI GATC 1 cut(s) 401
Sau96I GGNCC 2 cut(s) 37, 117
ScrFI CCNGG 2 cut(s) 129, 294
SduI GDGCHC 1 cut(s) 111
SetI ASST 6 cut(s) 85, 103, 111, 338, 344, 502
SfaNI GCATC 2 cut(s) 241, 433
SfoI GGCGCC 1 cut(s) 136
Sfr303I CCGCGG 1 cut(s) 453
SgrBI CCGCGG 1 cut(s) 453
SinI GGWCC 2 cut(s) 37, 117
SmiMI CAYNNNNRTG 1 cut(s) 20
Sse9I AATT 1 cut(s) 458
SsiI CCGC 7 cut(s) 53, 138, 206, 399, 420, 450, 452
SspDI GGCGCC 1 cut(s) 134
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 127, 292
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 2 cut(s) 97, 273
TasI AATT 1 cut(s) 458
TauI GCSGC 3 cut(s) 56, 140, 452
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 5 cut(s) 50, 83, 158, 422, 446
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 2 cut(s) 32, 141
VpaK11BI GGWCC 2 cut(s) 37, 117
XapI RAATTY 1 cut(s) 458
XceI RCATGY 1 cut(s) 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.