Rroxscaffold_2G00153000

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000974
Physical Location & Seq
Forward (+)
89832441 .. 89833234
794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00153000.1

Sequence Viewer

Length: 447 bp
ATGAATGTGAAGCATGTCATGGTGGTCCTTGCGATAGCATTTGTAGCAACAATGCTATATGGAACAGAAACTAAGTCTACGGAGTACGTAGGAGGCGACTTGGGTTGGACTATCCCTCCCGGCGGCGCTGCCACTTATGCTAAATGGGCTTCAAAGCATACCCTTGAAGTTAATAACGATATTATAGATAAACTTCGCCGGGCACTGCTCCAAGGGGCAAGAAGTAGTCATCTATTTCACTTCCCAGTTCCCCCACCGCCTGGGGTAGCTAGTTCCAAGTCCGCCAAGTGCTTCCGATCAATCTGCGACGACTCCGCTGTTAGAAATCATGGTAGAAACGGAGAGGCAAAGAAAATGGCTATGATGGAGTACTCTGTAACAAACTGTAGAAAACTGGGTACATGGATGAATGAAGAAGACGATGTACAGTTACAAAGAAATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

148

Amino Acids

16.35

Weight (kDa)

8.81

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 260
AccI GTMKAC 1 cut(s) 77
AciI CCGC 4 cut(s) 123, 257, 282, 315
AfaI GTAC 4 cut(s) 86, 371, 400, 426
AfiI CCNNNNNNNGG 2 cut(s) 122, 260
AgsI TTSAA 2 cut(s) 153, 167
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
ApeKI GCWGC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 25
AsuC2I CCSGG 2 cut(s) 120, 200
AvaII GGWCC 1 cut(s) 25
BaeGI GKGCMC 1 cut(s) 205
BarI GAAGNNNNNNTAC 2 cut(s) 408, 440
BbsI GAAGAC 1 cut(s) 423
BbvI GCAGC 1 cut(s) 115
BccI CCATC 1 cut(s) 358
BcgI CGANNNNNNTGC 2 cut(s) 285, 319
BciT130I CCWGG 1 cut(s) 261
BcnI CCSGG 2 cut(s) 120, 200
BfaI CTAG 1 cut(s) 270
BfmI CTRYAG 1 cut(s) 385
BfoI RGCGCY 1 cut(s) 129
BisI GCNGC 2 cut(s) 124, 129
BlsI GCNGC 2 cut(s) 125, 130
BmcAI AGTACT 1 cut(s) 371
Bme1390I CCNGG 3 cut(s) 120, 200, 261
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 25
BmrFI CCNGG 3 cut(s) 120, 200, 261
BmrI ACTGGG 2 cut(s) 239, 404
BmuI ACTGGG 2 cut(s) 239, 404
BpiI GAAGAC 1 cut(s) 423
BpuMI CCSGG 2 cut(s) 120, 200
BsaAI YACGTR 1 cut(s) 88
BsaJI CCNNGG 2 cut(s) 211, 260
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 260
Bse1I ACTGG 2 cut(s) 245, 399
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 2 cut(s) 211, 260
BseGI GGATG 1 cut(s) 411
BseLI CCNNNNNNNGG 2 cut(s) 122, 260
BseNI ACTGG 2 cut(s) 245, 399
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 1 cut(s) 115
BsiSI CCGG 2 cut(s) 120, 199
BslI CCNNNNNNNGG 2 cut(s) 122, 260
Bsp1286I GDGCHC 1 cut(s) 205
Bsp1407I TGTACA 1 cut(s) 424
Bsp143I GATC 1 cut(s) 296
BspACI CCGC 4 cut(s) 123, 257, 282, 315
BsrGI TGTACA 1 cut(s) 424
BsrI ACTGG 2 cut(s) 245, 399
BssECI CCNNGG 2 cut(s) 211, 260
BssMI GATC 1 cut(s) 296
BssT1I CCWWGG 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 386, 429
BstAUI TGTACA 1 cut(s) 424
BstBAI YACGTR 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 411
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 1 cut(s) 299
BstMBI GATC 1 cut(s) 296
BstMWI GCNNNNNNNGC 3 cut(s) 44, 137, 146
BstNI CCWGG 1 cut(s) 261
BstNSI RCATGY 1 cut(s) 17
BstSCI CCNGG 3 cut(s) 118, 198, 259
BstSFI CTRYAG 1 cut(s) 385
BstSLI GKGCMC 1 cut(s) 205
BstSNI TACGTA 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 115
BstV2I GAAGAC 1 cut(s) 423
BtsCI GGATG 1 cut(s) 411
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 203
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 25
Csp6I GTAC 4 cut(s) 85, 370, 399, 425
CviAII CATG 4 cut(s) 14, 19, 329, 402
CviJI RGCY 3 cut(s) 149, 269, 359
CviKI_1 RGCY 3 cut(s) 149, 269, 359
CviQI GTAC 4 cut(s) 85, 370, 399, 425
DdeI CTNAG 1 cut(s) 72
DpnI GATC 1 cut(s) 298
DpnII GATC 1 cut(s) 296
EciI GGCGGA 1 cut(s) 271
Eco105I TACGTA 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 211
FaeI CATG 4 cut(s) 17, 22, 332, 405
FatI CATG 4 cut(s) 13, 18, 328, 401
FblI GTMKAC 1 cut(s) 77
Fnu4HI GCNGC 2 cut(s) 124, 129
FokI GGATG 1 cut(s) 418
Fsp4HI GCNGC 2 cut(s) 124, 129
FspBI CTAG 1 cut(s) 270
GlaI GCGC 1 cut(s) 127
GluI GCNGC 2 cut(s) 124, 129
HaeII RGCGCY 1 cut(s) 129
HapII CCGG 2 cut(s) 120, 199
HhaI GCGC 1 cut(s) 128
Hin1II CATG 4 cut(s) 17, 22, 332, 405
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HinfI GANTC 1 cut(s) 311
HpaII CCGG 2 cut(s) 120, 199
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 296
Hpy8I GTNNAC 1 cut(s) 78
Hpy99I CGWCG 1 cut(s) 311
HpyCH4III ACNGT 2 cut(s) 386, 429
HpyCH4IV ACGT 1 cut(s) 87
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 137, 146
HpyF3I CTNAG 1 cut(s) 72
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 4 cut(s) 17, 22, 332, 405
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 1 cut(s) 296
LmnI GCTCC 1 cut(s) 213
LpnPI CCDG 6 cut(s) 133, 212, 246, 258, 273, 380
Lsp1109I GCAGC 1 cut(s) 115
MaeI CTAG 1 cut(s) 270
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 2 cut(s) 376, 429
MalI GATC 1 cut(s) 298
MboI GATC 1 cut(s) 296
MboII GAAGA 2 cut(s) 425, 428
MhlI GDGCHC 1 cut(s) 205
MlyI GAGTC 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 86
MnlI CCTC 3 cut(s) 86, 126, 337
MseI TTAA 1 cut(s) 171
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 2 cut(s) 120, 199
MspR9I CCNGG 3 cut(s) 120, 200, 261
MvaI CCWGG 1 cut(s) 261
MwoI GCNNNNNNNGC 3 cut(s) 44, 137, 146
NciI CCSGG 2 cut(s) 120, 200
NdeII GATC 1 cut(s) 296
NlaIII CATG 4 cut(s) 17, 22, 332, 405
NspI RCATGY 1 cut(s) 17
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PflMI CCANNNNNTGG 1 cut(s) 260
PkrI GCNGC 2 cut(s) 125, 130
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
Ppu21I YACGTR 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PspPI GGNCC 1 cut(s) 25
RsaI GTAC 4 cut(s) 86, 371, 400, 426
RsaNI GTAC 4 cut(s) 85, 370, 399, 425
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 2 cut(s) 124, 129
Sau3AI GATC 1 cut(s) 296
Sau96I GGNCC 1 cut(s) 25
ScaI AGTACT 1 cut(s) 371
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 3 cut(s) 120, 200, 261
SduI GDGCHC 1 cut(s) 205
SetI ASST 2 cut(s) 90, 271
SfcI CTRYAG 1 cut(s) 385
SinI GGWCC 1 cut(s) 25
SnaBI TACGTA 1 cut(s) 88
SsiI CCGC 4 cut(s) 123, 257, 282, 315
SspMI CTAG 1 cut(s) 270
StyD4I CCNGG 3 cut(s) 118, 198, 259
StyI CCWWGG 1 cut(s) 211
TaaI ACNGT 2 cut(s) 386, 429
TaiI ACGT 1 cut(s) 90
TatI WGTACW 2 cut(s) 369, 424
TauI GCSGC 1 cut(s) 126
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 1 cut(s) 210
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 3 cut(s) 17, 422, 426
TspGWI ACGGA 2 cut(s) 95, 354
TspRI CASTG 1 cut(s) 210
Van91I CCANNNNNTGG 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 25
XceI RCATGY 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 77
XspI CTAG 1 cut(s) 270
ZrmI AGTACT 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.