Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000974

Physical Location & Seq

Genomic Coordinates Reverse (-)

2253210 .. 2253821

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1029100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGTTCTAGCTATGGCATTGGCGGCAGTATCAATGATGTTGCATACAACAGAAGCTGCAGAGTATGTAGTAGGAGACGACTTGGGTTGGACTGTCCCGCCAGGCGGCGCTGCCAGTTACGCTTCGTGGGCTGCAAAGTATAGGTTTGTAGTTGACGATATTCTATACTTCAACTTCACAGAAGGAGAACATACTGTGGCTTTAGTAACCAAGGAGAATTATGAGATTTGCAACACCACAGATCCCTGGTCTAAACTCGATGGACCAATTGCACTTCAATTTCTTGCGTCAGACACATTTTACTTCACATGCACCTTCGCCGGCCACTGCGCTGGAGGCCAAAAGGTTGCGGTTTATATCGCTCCCTCTGCAAACACTCCAAGTCCAAGTCCAGGTGTTGCTCCTCTTCCTCCTGCTGCTGCTGCGTCCCTGCCCTTCACATTTGTGTCCAAAAAACTTGGGTTCAGGAAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

159

Amino Acids

16.82

Weight (kDa)

5.19

Isoelectric Point (pI)

33.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	30 - 114	4.2e-15	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000974)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02910 FvH4_1g02970 FvH4_6g40671
malus_domestica	MD02G1028900.v1.1 MD02G1029100.v1.1 MD15G1170500.v1.1
prunus_persica	Prupe.7G245800_v2.0.a1 Prupe.7G245900_v2.0.a1 Prupe.7G246100_v2.0.a1
pyrus_communis	pycom02g02370 pycom02g02380 pycom02g02390 pycom02g02400 pycom15g15200
rosa_chinensis	RchiOBHm_Chr2g0088061 RchiOBHm_Chr2g0088081 RchiOBHm_Chr2g0156091 RchiOBHm_Chr2g0156121 RchiOBHm_Chr2g0156131 RchiOBHm_Chr5g0060121 RchiOBHm_Chr5g0060181
rosa_multiflora	Rmu_co8398493.1_g000001 Rmu_sc0000260.1_g000020 Rmu_sc0000493.1_g000045 Rmu_sc0003275.1_g000013 Rmu_sc0003275.1_g000020 Rmu_sc0003275.1_g000042 Rmu_sc0011922.1_g000011
rosa_roxburghii	Rroxscaffold_1G00020520 Rroxscaffold_1G00020540 Rroxscaffold_2G00152970 Rroxscaffold_2G00152990 Rroxscaffold_2G00153000 Rroxscaffold_2G00153020
rosa_rugosa	Rorug01G0480500 Rorug01G0480600 Rorug01G0480800 Rorug02G0451600 Rorug02G0451600 Rorug05G0328200
rosa_samantha	Rh2AG035400 Rh2AG035700 Rh2BG034400 Rh2BG034600 Rh2BG034900 Rh2BG529600 Rh2CG035600 Rh2CG036000 Rh2CG503200 Rh2DG035100 Rh2DG035500 Rh5AG392000 Rh5AG392100 Rh5BG404500 Rh5BG404600 Rh5CG428200 Rh5CG428600 Rh5DG420300
rosa_wichuraiana	Rw2G002780 Rw2G002790 Rw2G002810 Rw5G036960 Rw5G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	23, 98, 105, 350
AclWI	GGATC	1 cut(s)	236
AcoI	YGGCCR	1 cut(s)	322
AfiI	CCNNNNNNNGG	2 cut(s)	104, 392
AgsI	TTSAA	2 cut(s)	172, 278
AjnI	CCWGG	3 cut(s)	100, 245, 391
AleI	CACNNNNGTG	1 cut(s)	443
AluBI	AGCT	2 cut(s)	11, 56
AluI	AGCT	2 cut(s)	11, 56
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	1 cut(s)	236
AlwNI	CAGNNNCTG	1 cut(s)	56
AoxI	GGCC	2 cut(s)	322, 337
ApeKI	GCWGC	6 cut(s)	56, 110, 131, 416, 419, 422
AspLEI	GCGC	2 cut(s)	110, 332
AspS9I	GGNCC	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	263
BbvI	GCAGC	6 cut(s)	43, 97, 118, 403, 406, 409
BccI	CCATC	1 cut(s)	254
BciT130I	CCWGG	3 cut(s)	102, 247, 393
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	1 cut(s)	8
BfmI	CTRYAG	1 cut(s)	57
BfoI	RGCGCY	1 cut(s)	111
BisI	GCNGC	8 cut(s)	24, 57, 106, 111, 132, 417, 420, 423
BlsI	GCNGC	8 cut(s)	25, 58, 107, 112, 133, 418, 421, 424
Bme1390I	CCNGG	3 cut(s)	102, 247, 393
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmrFI	CCNGG	3 cut(s)	102, 247, 393
BpmI	CTGGAG	1 cut(s)	354
BsaJI	CCNNGG	2 cut(s)	210, 245
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 392
Bse118I	RCCGGY	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	114
BseBI	CCWGG	3 cut(s)	102, 247, 393
BseDI	CCNNGG	2 cut(s)	210, 245
BseLI	CCNNNNNNNGG	2 cut(s)	104, 392
BseNI	ACTGG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	393
BseXI	GCAGC	6 cut(s)	43, 97, 118, 403, 406, 409
BshFI	GGCC	2 cut(s)	324, 339
BsiSI	CCGG	1 cut(s)	321
BslFI	GGGAC	2 cut(s)	80, 412
BslI	CCNNNNNNNGG	2 cut(s)	104, 392
BsmAI	GTCTC	1 cut(s)	69
BsmBI	CGTCTC	1 cut(s)	69
BsmFI	GGGAC	2 cut(s)	80, 412
BsnI	GGCC	2 cut(s)	324, 339
Bsp143I	GATC	1 cut(s)	241
BspACI	CCGC	4 cut(s)	23, 98, 105, 350
BspANI	GGCC	2 cut(s)	324, 339
BspMAI	CTGCAG	1 cut(s)	61
BspPI	GGATC	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	114
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	2 cut(s)	210, 245
BssMI	GATC	1 cut(s)	241
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	3 cut(s)	102, 247, 393
Bst4CI	ACNGT	2 cut(s)	94, 196
Bst6I	CTCTTC	1 cut(s)	411
BstC8I	GCNNGC	1 cut(s)	322
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	2 cut(s)	110, 332
BstKTI	GATC	1 cut(s)	244
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 119, 128, 336, 368, 422
BstNI	CCWGG	3 cut(s)	102, 247, 393
BstNSI	RCATGY	1 cut(s)	312
BstSCI	CCNGG	3 cut(s)	100, 245, 391
BstSFI	CTRYAG	1 cut(s)	57
BstV1I	GCAGC	6 cut(s)	43, 97, 118, 403, 406, 409
BstX2I	RGATCY	1 cut(s)	241
BstXI	CCANNNNNNTGG	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	241
BsuRI	GGCC	2 cut(s)	324, 339
BtsI	GCAGTG	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	322
CaiI	CAGNNNCTG	1 cut(s)	56
CfoI	GCGC	2 cut(s)	110, 332
Cfr10I	RCCGGY	1 cut(s)	320
Cfr13I	GGNCC	1 cut(s)	263
CseI	GACGC	2 cut(s)	276, 414
CviAII	CATG	1 cut(s)	309
CviJI	RGCY	6 cut(s)	11, 56, 131, 200, 324, 339
CviKI_1	RGCY	6 cut(s)	11, 56, 131, 200, 324, 339
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Eco130I	CCWWGG	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	263
EcoRII	CCWGG	3 cut(s)	100, 245, 391
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	1 cut(s)	312
FaiI	YATR	9 cut(s)	14, 45, 66, 141, 166, 192, 222, 310, 357
FaqI	GGGAC	2 cut(s)	80, 412
FatI	CATG	1 cut(s)	308
FauI	CCCGC	1 cut(s)	105
Fnu4HI	GCNGC	8 cut(s)	24, 57, 106, 111, 132, 417, 420, 423
Fsp4HI	GCNGC	8 cut(s)	24, 57, 106, 111, 132, 417, 420, 423
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	2 cut(s)	109, 331
GluI	GCNGC	8 cut(s)	24, 57, 106, 111, 132, 417, 420, 423
GsuI	CTGGAG	1 cut(s)	354
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	324, 339
HapII	CCGG	1 cut(s)	321
HgaI	GACGC	2 cut(s)	276, 414
HhaI	GCGC	2 cut(s)	110, 332
Hin1II	CATG	1 cut(s)	312
Hin6I	GCGC	2 cut(s)	108, 330
HinP1I	GCGC	2 cut(s)	108, 330
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HpaII	CCGG	1 cut(s)	321
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	1 cut(s)	466
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	3 cut(s)	176, 325, 445
HpyCH4III	ACNGT	2 cut(s)	94, 196
HpyCH4V	TGCA	7 cut(s)	43, 59, 134, 231, 272, 312, 371
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 119, 128, 336, 368, 422
Hsp92II	CATG	1 cut(s)	312
HspAI	GCGC	2 cut(s)	108, 330
KroI	GCCGGC	1 cut(s)	320
KroNI	GCCGGC	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	241
LmnI	GCTCC	2 cut(s)	367, 406
Lsp1109I	GCAGC	6 cut(s)	43, 97, 118, 403, 406, 409
MaeI	CTAG	1 cut(s)	8
MaeIII	GTNAC	2 cut(s)	116, 205
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	1 cut(s)	398
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	3 cut(s)	217, 267, 278
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	4 cut(s)	329, 376, 414, 420
MroNI	GCCGGC	1 cut(s)	320
MslI	CAYNNNNRTG	1 cut(s)	443
MspI	CCGG	1 cut(s)	321
MspR9I	CCNGG	3 cut(s)	102, 247, 393
MunI	CAATTG	1 cut(s)	267
MvaI	CCWGG	3 cut(s)	102, 247, 393
MwoI	GCNNNNNNNGC	6 cut(s)	23, 119, 128, 336, 368, 422
NaeI	GCCGGC	1 cut(s)	322
NdeII	GATC	1 cut(s)	241
NgoMIV	GCCGGC	1 cut(s)	320
NlaIII	CATG	1 cut(s)	312
NspI	RCATGY	1 cut(s)	312
OliI	CACNNNNGTG	1 cut(s)	443
PdiI	GCCGGC	1 cut(s)	322
PkrI	GCNGC	8 cut(s)	25, 58, 107, 112, 133, 418, 421, 424
Psp6I	CCWGG	3 cut(s)	100, 245, 391
PspGI	CCWGG	3 cut(s)	100, 245, 391
PspPI	GGNCC	1 cut(s)	263
PstI	CTGCAG	1 cut(s)	61
PstNI	CAGNNNCTG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	443
SatI	GCNGC	8 cut(s)	24, 57, 106, 111, 132, 417, 420, 423
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	1 cut(s)	263
ScrFI	CCNGG	3 cut(s)	102, 247, 393
SetI	ASST	6 cut(s)	13, 58, 146, 317, 348, 397
SfcI	CTRYAG	1 cut(s)	57
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	443
Sse9I	AATT	3 cut(s)	217, 267, 278
SsiI	CCGC	4 cut(s)	23, 98, 105, 350
SspMI	CTAG	1 cut(s)	8
StyD4I	CCNGG	3 cut(s)	100, 245, 391
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	94, 196
TaqI	TCGA	1 cut(s)	258
TasI	AATT	3 cut(s)	217, 267, 278
TauI	GCSGC	2 cut(s)	26, 108
TscAI	CASTG	1 cut(s)	332
TseI	GCWGC	6 cut(s)	56, 110, 131, 416, 419, 422
TspRI	CASTG	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	263
XceI	RCATGY	1 cut(s)	312
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.