Rh5BG404500

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000974
Physical Location & Seq
Forward (+)
65633583 .. 65675037
41455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG404500.1

Sequence Viewer

Length: 642 bp
ATGATGAGTATGAAGTATATGATCGTGCTTGTCATAGCAATTGTAGCAATCGCAGAAGGCGCCGAGTACACTGTAGGAGACGACATGGGTTGGATGGTTCCTCCCACTCCCGACTATTATGCTTCATGGGTTTCCAAGTATTCTTTTGTGGAGAACGACACTCTAGTGTTTAACTTTGAAGAAGGAATGCATGACATCACTGTACTAACCAAGGAAGACTTCGACGCCTGCAACATGAAGAATCCCTTGTTTCAGTTCCCAAATCCAGGGGGAGTTACAGTTGAGGCGCTGCACTTGAGACCCGATCTCGACCTCGAATCCGCCACTGCCTGCAGCACCAGAGTCCCATCTGCAATCAGACGGAGGAGGAAGAAGATCCCAGCAGCACTCGATCCCAGACCAGCCAGACCGGCCTGTCCTCCCAGCAGCCACCGATTAGCTGCTGCTTTGACAACTATGTTTTTGTTAATCATTTATGTATCCTTTCCTTTATCTCAATCTCAATTCTTTTGTGGCAGCATCATCAAAGTCAGTAAGATGATCCGACTTAACCTTTCCGGAGATCAGTTGTATTGTGCATATCTATACACCATCCCCAATTTGTTCTATTGTATGGGATTTTATCCCTGGACACTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

213

Amino Acids

24.01

Weight (kDa)

6.28

Isoelectric Point (pI)

55.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 87 1.1e-08 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 414
AccB1I GGYRCC 1 cut(s) 59
AccIII TCCGGA 1 cut(s) 557
AciI CCGC 1 cut(s) 321
AclWI GGATC 3 cut(s) 370, 386, 535
AcyI GRCGYC 2 cut(s) 60, 225
AfaI GTAC 2 cut(s) 68, 204
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 1 cut(s) 179
AjnI CCWGG 2 cut(s) 265, 626
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AleI CACNNNNGTG 1 cut(s) 164
AluBI AGCT 1 cut(s) 440
AluI AGCT 1 cut(s) 440
Alw26I GTCTC 2 cut(s) 72, 292
AlwI GGATC 3 cut(s) 370, 386, 535
Aor13HI TCCGGA 1 cut(s) 557
AoxI GGCC 1 cut(s) 411
ApeKI GCWGC 7 cut(s) 289, 333, 383, 426, 440, 443, 516
AspLEI GCGC 2 cut(s) 62, 289
BanI GGYRCC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 222
BbvI GCAGC 7 cut(s) 276, 345, 395, 427, 430, 438, 528
BccI CCATC 3 cut(s) 88, 355, 599
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 2 cut(s) 267, 628
BciVI GTATCC 1 cut(s) 490
BcoDI GTCTC 2 cut(s) 72, 292
BfaI CTAG 1 cut(s) 164
BfmI CTRYAG 2 cut(s) 72, 331
BfoI RGCGCY 2 cut(s) 63, 290
BfuI GTATCC 1 cut(s) 490
BglI GCCNNNNNGGC 1 cut(s) 410
BisI GCNGC 7 cut(s) 290, 334, 384, 427, 441, 444, 517
BlsI GCNGC 7 cut(s) 291, 335, 385, 428, 442, 445, 518
Bme1390I CCNGG 2 cut(s) 267, 628
BmiI GGNNCC 2 cut(s) 61, 99
BmrFI CCNGG 2 cut(s) 267, 628
BmsI GCATC 1 cut(s) 528
BpiI GAAGAC 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 316
BsaHI GRCGYC 2 cut(s) 60, 225
BsaI GGTCTC 1 cut(s) 292
BsaJI CCNNGG 3 cut(s) 210, 266, 626
BsaWI WCCGGW 1 cut(s) 557
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse118I RCCGGY 1 cut(s) 409
BseAI TCCGGA 1 cut(s) 557
BseBI CCWGG 2 cut(s) 267, 628
BseDI CCNNGG 3 cut(s) 210, 266, 626
BseGI GGATG 2 cut(s) 99, 591
BseLI CCNNNNNNNGG 1 cut(s) 266
BseRI GAGGAG 1 cut(s) 379
BseXI GCAGC 7 cut(s) 276, 345, 395, 427, 430, 438, 528
BseYI CCCAGC 2 cut(s) 379, 422
BsgI GTGCAG 1 cut(s) 275
BshFI GGCC 1 cut(s) 413
BshNI GGYRCC 1 cut(s) 59
BsiSI CCGG 2 cut(s) 410, 558
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 1 cut(s) 266
BsmAI GTCTC 2 cut(s) 72, 292
BsmBI CGTCTC 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 329
BsmI GAATGC 1 cut(s) 192
BsnI GGCC 1 cut(s) 413
Bso31I GGTCTC 1 cut(s) 292
Bsp13I TCCGGA 1 cut(s) 557
Bsp143I GATC 6 cut(s) 21, 304, 375, 391, 540, 562
BspACI CCGC 1 cut(s) 321
BspANI GGCC 1 cut(s) 413
BspEI TCCGGA 1 cut(s) 557
BspLI GGNNCC 2 cut(s) 61, 99
BspMAI CTGCAG 1 cut(s) 335
BspPI GGATC 3 cut(s) 370, 386, 535
BspT107I GGYRCC 1 cut(s) 59
BspTNI GGTCTC 1 cut(s) 292
BsrFI RCCGGY 1 cut(s) 409
BssAI RCCGGY 1 cut(s) 409
BssECI CCNNGG 3 cut(s) 210, 266, 626
BssMI GATC 6 cut(s) 21, 304, 375, 391, 540, 562
BssNI GRCGYC 2 cut(s) 60, 225
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 2 cut(s) 267, 628
Bst4CI ACNGT 3 cut(s) 73, 202, 280
BstACI GRCGYC 2 cut(s) 60, 225
BstC8I GCNNGC 2 cut(s) 229, 331
BstF5I GGATG 2 cut(s) 99, 591
BstH2I RGCGCY 2 cut(s) 63, 290
BstHHI GCGC 2 cut(s) 62, 289
BstKTI GATC 6 cut(s) 24, 307, 378, 394, 543, 565
BstMAI GTCTC 2 cut(s) 72, 292
BstMBI GATC 6 cut(s) 21, 304, 375, 391, 540, 562
BstMWI GCNNNNNNNGC 3 cut(s) 44, 59, 410
BstNI CCWGG 2 cut(s) 267, 628
BstSCI CCNGG 2 cut(s) 265, 626
BstSFI CTRYAG 2 cut(s) 72, 331
BstV1I GCAGC 7 cut(s) 276, 345, 395, 427, 430, 438, 528
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 375
BstYI RGATCY 1 cut(s) 375
BsuI GTATCC 1 cut(s) 490
BsuRI GGCC 1 cut(s) 413
BtsCI GGATG 2 cut(s) 99, 591
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 4 cut(s) 69, 198, 324, 632
Cac8I GCNNGC 2 cut(s) 229, 331
CfoI GCGC 2 cut(s) 62, 289
Cfr10I RCCGGY 1 cut(s) 409
CseI GACGC 1 cut(s) 233
Csp6I GTAC 2 cut(s) 67, 203
CviAII CATG 4 cut(s) 85, 126, 191, 235
CviJI RGCY 4 cut(s) 404, 413, 429, 440
CviKI_1 RGCY 4 cut(s) 404, 413, 429, 440
CviQI GTAC 2 cut(s) 67, 203
DinI GGCGCC 1 cut(s) 61
DpnI GATC 6 cut(s) 23, 306, 377, 393, 542, 564
DpnII GATC 6 cut(s) 21, 304, 375, 391, 540, 562
DrdI GACNNNNNNGTC 1 cut(s) 414
DseDI GACNNNNNNGTC 1 cut(s) 414
EciI GGCGGA 1 cut(s) 310
Eco130I CCWWGG 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 292
EcoRII CCWGG 2 cut(s) 265, 626
EcoT14I CCWWGG 1 cut(s) 210
EcoT22I ATGCAT 1 cut(s) 192
EgeI GGCGCC 1 cut(s) 61
EheI GGCGCC 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 210
Esp3I CGTCTC 1 cut(s) 72
FaeI CATG 4 cut(s) 88, 129, 194, 238
FalI AAGNNNNNCTT 4 cut(s) 203, 235, 230, 262
FaqI GGGAC 1 cut(s) 329
FatI CATG 4 cut(s) 84, 125, 190, 234
Fnu4HI GCNGC 7 cut(s) 290, 334, 384, 427, 441, 444, 517
FokI GGATG 2 cut(s) 106, 578
Fsp4HI GCNGC 7 cut(s) 290, 334, 384, 427, 441, 444, 517
FspBI CTAG 1 cut(s) 164
GlaI GCGC 2 cut(s) 61, 288
GluI GCNGC 7 cut(s) 290, 334, 384, 427, 441, 444, 517
GsaI CCCAGC 2 cut(s) 383, 426
HaeII RGCGCY 2 cut(s) 63, 290
HaeIII GGCC 1 cut(s) 413
HapII CCGG 2 cut(s) 410, 558
HgaI GACGC 1 cut(s) 233
HhaI GCGC 2 cut(s) 62, 289
Hin1I GRCGYC 2 cut(s) 60, 225
Hin1II CATG 4 cut(s) 88, 129, 194, 238
Hin6I GCGC 2 cut(s) 60, 287
HinP1I GCGC 2 cut(s) 60, 287
HinfI GANTC 3 cut(s) 241, 317, 342
HpaII CCGG 2 cut(s) 410, 558
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 2 cut(s) 359, 545
Hpy188III TCNNGA 3 cut(s) 110, 308, 558
Hpy8I GTNNAC 1 cut(s) 69
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 2 cut(s) 50, 176
HpyCH4III ACNGT 3 cut(s) 73, 202, 280
HpyCH4V TGCA 6 cut(s) 190, 231, 292, 333, 353, 578
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 59, 410
Hsp92I GRCGYC 2 cut(s) 60, 225
Hsp92II CATG 4 cut(s) 88, 129, 194, 238
HspAI GCGC 2 cut(s) 60, 287
KasI GGCGCC 1 cut(s) 59
Kpn2I TCCGGA 1 cut(s) 557
Kzo9I GATC 6 cut(s) 21, 304, 375, 391, 540, 562
Lsp1109I GCAGC 7 cut(s) 276, 345, 395, 427, 430, 438, 528
LweI GCATC 1 cut(s) 528
MaeI CTAG 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 274
MalI GATC 6 cut(s) 23, 306, 377, 393, 542, 564
MboI GATC 6 cut(s) 21, 304, 375, 391, 540, 562
MboII GAAGA 5 cut(s) 191, 227, 250, 382, 385
MfeI CAATTG 1 cut(s) 39
MflI RGATCY 1 cut(s) 375
MluCI AATT 3 cut(s) 39, 503, 598
Mly113I GGCGCC 1 cut(s) 60
MlyI GAGTC 1 cut(s) 351
MmeI TCCRAC 2 cut(s) 71, 568
MnlI CCTC 6 cut(s) 111, 277, 323, 357, 360, 429
Mph1103I ATGCAT 1 cut(s) 192
MroI TCCGGA 1 cut(s) 557
MseI TTAA 3 cut(s) 171, 467, 549
MslI CAYNNNNRTG 2 cut(s) 164, 637
MspI CCGG 2 cut(s) 410, 558
MspR9I CCNGG 2 cut(s) 267, 628
MunI CAATTG 1 cut(s) 39
Mva1269I GAATGC 1 cut(s) 192
MvaI CCWGG 2 cut(s) 267, 628
MwoI GCNNNNNNNGC 3 cut(s) 44, 59, 410
NarI GGCGCC 1 cut(s) 60
NdeII GATC 6 cut(s) 21, 304, 375, 391, 540, 562
NlaIII CATG 4 cut(s) 88, 129, 194, 238
NlaIV GGNNCC 2 cut(s) 61, 99
NmeAIII GCCGAG 1 cut(s) 88
NsiI ATGCAT 1 cut(s) 192
OliI CACNNNNGTG 1 cut(s) 164
PctI GAATGC 1 cut(s) 192
PfeI GAWTC 2 cut(s) 241, 317
PkrI GCNGC 7 cut(s) 291, 335, 385, 428, 442, 445, 518
PleI GAGTC 1 cut(s) 350
PluTI GGCGCC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 350
Psp6I CCWGG 2 cut(s) 265, 626
PspFI CCCAGC 2 cut(s) 379, 422
PspGI CCWGG 2 cut(s) 265, 626
PspN4I GGNNCC 2 cut(s) 61, 99
PstI CTGCAG 1 cut(s) 335
PsuI RGATCY 1 cut(s) 375
RsaI GTAC 2 cut(s) 68, 204
RsaNI GTAC 2 cut(s) 67, 203
RseI CAYNNNNRTG 2 cut(s) 164, 637
SaqAI TTAA 3 cut(s) 171, 467, 549
SatI GCNGC 7 cut(s) 290, 334, 384, 427, 441, 444, 517
Sau3AI GATC 6 cut(s) 21, 304, 375, 391, 540, 562
SchI GAGTC 1 cut(s) 351
ScrFI CCNGG 2 cut(s) 267, 628
SetI ASST 3 cut(s) 315, 442, 555
SfaNI GCATC 1 cut(s) 528
SfcI CTRYAG 2 cut(s) 72, 331
SfoI GGCGCC 1 cut(s) 61
SmiMI CAYNNNNRTG 2 cut(s) 164, 637
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
Sse9I AATT 3 cut(s) 39, 503, 598
SsiI CCGC 1 cut(s) 321
SspDI GGCGCC 1 cut(s) 59
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 2 cut(s) 265, 626
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 3 cut(s) 73, 202, 280
TaqI TCGA 4 cut(s) 222, 309, 315, 390
TasI AATT 3 cut(s) 39, 503, 598
TatI WGTACW 2 cut(s) 66, 202
TfiI GAWTC 2 cut(s) 241, 317
Tru1I TTAA 3 cut(s) 171, 467, 549
Tru9I TTAA 3 cut(s) 171, 467, 549
TscAI CASTG 4 cut(s) 76, 205, 331, 639
TseI GCWGC 7 cut(s) 289, 333, 383, 426, 440, 443, 516
TspDTI ATGAA 3 cut(s) 26, 114, 251
TspGWI ACGGA 1 cut(s) 376
TspRI CASTG 4 cut(s) 76, 205, 331, 639
XspI CTAG 1 cut(s) 164
Zsp2I ATGCAT 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.