Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000974

Physical Location & Seq

Genomic Coordinates Reverse (-)

2221787 .. 2222585

Gene Structure 799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1028900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTAGAACCATGAACATGAACAATGTGATGGTCCTTGCTATAGCAATCATAGCAATATCCGTAGTGCTACCTACAACAGAAGCTGCATTGTATACCGTCGGCGACGAGTTGGGTTGGGCTATTCCTCCCGAAGCTGGCTATTATGCTGCCTGGGCTTCCAAGCATAGCTTCTTCGTTAACGATATTCTAGTATTTAACTTCACTGAAGGAGAAGAAGACTTGGCTATGGTAACCAAGGAAGATTTTGATGCGTGTAACACCTCGAATCCCTTGTTTTATTTCGATGAACCACCAACGCTTAAATTTCTCGCAAGTGACACGTTTTATTTCACGAGCACCTTTGACGGGCACTGCCCCAGAGGGCAAAAGGTAGCTATTTACATCGCTCCGTCTTCAGCCACTCCCCCATGCCCAAGTCCAACTGCTGCTGTTCAGGCTCATGCGACAATCCCCATCAAATTTGTGTCTATGAAGGTCAAGCAAGGCAAAAGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

167

Amino Acids

18.14

Weight (kDa)

5.06

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	40 - 123	6.6e-14	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000974)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02910 FvH4_1g02970 FvH4_6g40671
malus_domestica	MD02G1028900.v1.1 MD02G1029100.v1.1 MD15G1170500.v1.1
prunus_persica	Prupe.7G245800_v2.0.a1 Prupe.7G245900_v2.0.a1 Prupe.7G246100_v2.0.a1
pyrus_communis	pycom02g02370 pycom02g02380 pycom02g02390 pycom02g02400 pycom15g15200
rosa_chinensis	RchiOBHm_Chr2g0088061 RchiOBHm_Chr2g0088081 RchiOBHm_Chr2g0156091 RchiOBHm_Chr2g0156121 RchiOBHm_Chr2g0156131 RchiOBHm_Chr5g0060121 RchiOBHm_Chr5g0060181
rosa_multiflora	Rmu_co8398493.1_g000001 Rmu_sc0000260.1_g000020 Rmu_sc0000493.1_g000045 Rmu_sc0003275.1_g000013 Rmu_sc0003275.1_g000020 Rmu_sc0003275.1_g000042 Rmu_sc0011922.1_g000011
rosa_roxburghii	Rroxscaffold_1G00020520 Rroxscaffold_1G00020540 Rroxscaffold_2G00152970 Rroxscaffold_2G00152990 Rroxscaffold_2G00153000 Rroxscaffold_2G00153020
rosa_rugosa	Rorug01G0480500 Rorug01G0480600 Rorug01G0480800 Rorug02G0451600 Rorug02G0451600 Rorug05G0328200
rosa_samantha	Rh2AG035400 Rh2AG035700 Rh2BG034400 Rh2BG034600 Rh2BG034900 Rh2BG529600 Rh2CG035600 Rh2CG036000 Rh2CG503200 Rh2DG035100 Rh2DG035500 Rh5AG392000 Rh5AG392100 Rh5BG404500 Rh5BG404600 Rh5CG428200 Rh5CG428600 Rh5DG420300
rosa_wichuraiana	Rw2G002780 Rw2G002790 Rw2G002810 Rw5G036960 Rw5G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	95
AcsI	RAATTY	2 cut(s)	305, 461
AcuI	CTGAAG	2 cut(s)	228, 381
AfiI	CCNNNNNNNGG	2 cut(s)	137, 348
AflIII	ACRYGT	1 cut(s)	321
AjnI	CCWGG	1 cut(s)	152
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
AluBI	AGCT	4 cut(s)	86, 137, 171, 377
AluI	AGCT	4 cut(s)	86, 137, 171, 377
Alw21I	GWGCWC	1 cut(s)	341
AlwNI	CAGNNNCTG	1 cut(s)	86
ApeKI	GCWGC	3 cut(s)	86, 149, 428
ApoI	RAATTY	2 cut(s)	305, 461
AspS9I	GGNCC	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	354
BauI	CACGAG	1 cut(s)	334
BbsI	GAAGAC	2 cut(s)	225, 387
Bbv12I	GWGCWC	1 cut(s)	341
BbvI	GCAGC	3 cut(s)	73, 136, 415
BccI	CCATC	2 cut(s)	25, 464
BciT130I	CCWGG	1 cut(s)	154
BfaI	CTAG	2 cut(s)	6, 191
BfmI	CTRYAG	1 cut(s)	42
BisI	GCNGC	3 cut(s)	87, 150, 429
BlsI	GCNGC	3 cut(s)	88, 151, 430
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	241
BpiI	GAAGAC	2 cut(s)	225, 387
BsaJI	CCNNGG	2 cut(s)	153, 237
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 348
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	2 cut(s)	153, 237
BseLI	CCNNNNNNNGG	2 cut(s)	137, 348
BseSI	GKGCMC	1 cut(s)	354
BseXI	GCAGC	3 cut(s)	73, 136, 415
BsiHKAI	GWGCWC	1 cut(s)	341
BslI	CCNNNNNNNGG	2 cut(s)	137, 348
Bsp1286I	GDGCHC	2 cut(s)	341, 354
Bsp143I	GATC	1 cut(s)	494
BspHI	TCATGA	1 cut(s)	497
BssECI	CCNNGG	2 cut(s)	153, 237
BssMI	GATC	1 cut(s)	494
BssNAI	GTATAC	1 cut(s)	96
BssSI	CACGAG	1 cut(s)	334
BssT1I	CCWWGG	1 cut(s)	237
Bst1107I	GTATAC	1 cut(s)	96
Bst2BI	CACGAG	1 cut(s)	334
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	139
BstEII	GGTNACC	1 cut(s)	232
BstKTI	GATC	1 cut(s)	497
BstMBI	GATC	1 cut(s)	494
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 155, 437
BstNI	CCWGG	1 cut(s)	154
BstPI	GGTNACC	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	42
BstSLI	GKGCMC	1 cut(s)	354
BstV1I	GCAGC	3 cut(s)	73, 136, 415
BstV2I	GAAGAC	2 cut(s)	225, 387
BstZ17I	GTATAC	1 cut(s)	96
BtgZI	GCGATG	1 cut(s)	370
BtsI	GCAGTG	1 cut(s)	352
BtsIMutI	CAGTG	2 cut(s)	204, 352
Cac8I	GCNNGC	1 cut(s)	139
CaiI	CAGNNNCTG	1 cut(s)	86
CciI	TCATGA	1 cut(s)	497
Cfr13I	GGNCC	1 cut(s)	34
CviAII	CATG	5 cut(s)	13, 19, 411, 443, 498
DpnI	GATC	1 cut(s)	496
DpnII	GATC	1 cut(s)	494
Eco130I	CCWWGG	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	34
Eco57I	CTGAAG	2 cut(s)	228, 381
Eco91I	GGTNACC	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	5 cut(s)	16, 22, 414, 446, 501
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FatI	CATG	5 cut(s)	12, 18, 410, 442, 497
FblI	GTMKAC	1 cut(s)	95
Fnu4HI	GCNGC	3 cut(s)	87, 150, 429
Fsp4HI	GCNGC	3 cut(s)	87, 150, 429
FspBI	CTAG	2 cut(s)	6, 191
GluI	GCNGC	3 cut(s)	87, 150, 429
Hin1II	CATG	5 cut(s)	16, 22, 414, 446, 501
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	1 cut(s)	268
HpaI	GTTAAC	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	96, 181
Hpy188III	TCNNGA	3 cut(s)	131, 334, 498
Hpy8I	GTNNAC	2 cut(s)	96, 181
Hpy99I	CGWCG	2 cut(s)	104, 110
HpyAV	CCTTC	2 cut(s)	203, 469
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	1 cut(s)	89
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 155, 437
HpySE526I	ACGT	1 cut(s)	323
Hsp92II	CATG	5 cut(s)	16, 22, 414, 446, 501
KspAI	GTTAAC	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	494
LmnI	GCTCC	1 cut(s)	394
LpnPI	CCDG	5 cut(s)	123, 139, 166, 373, 422
Lsp1109I	GCAGC	3 cut(s)	73, 136, 415
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	2 cut(s)	6, 191
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	3 cut(s)	232, 257, 317
MalI	GATC	1 cut(s)	496
MboI	GATC	1 cut(s)	494
MboII	GAAGA	5 cut(s)	166, 227, 230, 254, 387
MhlI	GDGCHC	2 cut(s)	341, 354
MluCI	AATT	2 cut(s)	305, 461
MmeI	TCCRAC	1 cut(s)	446
MnlI	CCTC	3 cut(s)	138, 274, 356
MseI	TTAA	3 cut(s)	180, 198, 303
MslI	CAYNNNNRTG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	3 cut(s)	53, 155, 437
NdeII	GATC	1 cut(s)	494
NlaIII	CATG	5 cut(s)	16, 22, 414, 446, 501
NmuCI	GTSAC	1 cut(s)	317
PagI	TCATGA	1 cut(s)	497
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	3 cut(s)	88, 151, 430
Psp6I	CCWGG	1 cut(s)	152
PspEI	GGTNACC	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	152
PspPI	GGNCC	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	17
SaqAI	TTAA	3 cut(s)	180, 198, 303
SatI	GCNGC	3 cut(s)	87, 150, 429
Sau3AI	GATC	1 cut(s)	494
Sau96I	GGNCC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	2 cut(s)	341, 354
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	42
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	17
Sse9I	AATT	2 cut(s)	305, 461
SspMI	CTAG	2 cut(s)	6, 191
StyD4I	CCNGG	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	2 cut(s)	266, 285
TasI	AATT	2 cut(s)	305, 461
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	3 cut(s)	180, 198, 303
Tru9I	TTAA	3 cut(s)	180, 198, 303
TscAI	CASTG	2 cut(s)	211, 359
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	3 cut(s)	86, 149, 428
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	4 cut(s)	29, 35, 303, 488
TspGWI	ACGGA	2 cut(s)	52, 381
TspRI	CASTG	2 cut(s)	211, 359
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	2 cut(s)	305, 461
XmiI	GTMKAC	1 cut(s)	95
XspI	CTAG	2 cut(s)	6, 191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.