Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000974

Physical Location & Seq

Genomic Coordinates Reverse (-)

1484800 .. 1485452

Gene Structure 653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g02380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGATCAAAGCCATGAACTTTAGGAACCTGATGGTTCTAGCTATAGCAGTGGCAACAGTAGCAATGATGTCACATACAACAGCAGCTACAGAGTACGTAGTTGGAGACGACTTGGGTTGGACTGTCCCGCCCGGCGGCGCTGCCTATTACGTTTCATGGGCTGCCAATCATAGCTTTGTACTTAACGATGCTCTATACTTCAAGTTTACAGAAGGAGAACATACCGTGGCTATGGTAACCAAGGAAAATTTCGAGATTTGCAACACTACAAATCCCATATTTGAACTCCAGAAACCAAGTATAATTGGATTTACTGCGTCAGACACATATTATTTCACCTGCACTATCGCCGGCCACTGCGCTGAAGGCCAAAAGGTTGCGGTTTATTTCGCTCCCTCTGCAAATACTCCAAGTCCAAGTCCAAGTGGTGCTCCTCCTACCCCTGCTGCTTCTCTACCGCCCGTCAAATTTATCTCTAAAAGACTAGGGCACAGAAAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

168

Amino Acids

17.98

Weight (kDa)

6.95

Isoelectric Point (pI)

32.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	40 - 124	9.7e-16	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000974)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02910 FvH4_1g02970 FvH4_6g40671
malus_domestica	MD02G1028900.v1.1 MD02G1029100.v1.1 MD15G1170500.v1.1
prunus_persica	Prupe.7G245800_v2.0.a1 Prupe.7G245900_v2.0.a1 Prupe.7G246100_v2.0.a1
pyrus_communis	pycom02g02370 pycom02g02380 pycom02g02390 pycom02g02400 pycom15g15200
rosa_chinensis	RchiOBHm_Chr2g0088061 RchiOBHm_Chr2g0088081 RchiOBHm_Chr2g0156091 RchiOBHm_Chr2g0156121 RchiOBHm_Chr2g0156131 RchiOBHm_Chr5g0060121 RchiOBHm_Chr5g0060181
rosa_multiflora	Rmu_co8398493.1_g000001 Rmu_sc0000260.1_g000020 Rmu_sc0000493.1_g000045 Rmu_sc0003275.1_g000013 Rmu_sc0003275.1_g000020 Rmu_sc0003275.1_g000042 Rmu_sc0011922.1_g000011
rosa_roxburghii	Rroxscaffold_1G00020520 Rroxscaffold_1G00020540 Rroxscaffold_2G00152970 Rroxscaffold_2G00152990 Rroxscaffold_2G00153000 Rroxscaffold_2G00153020
rosa_rugosa	Rorug01G0480500 Rorug01G0480600 Rorug01G0480800 Rorug02G0451600 Rorug02G0451600 Rorug05G0328200
rosa_samantha	Rh2AG035400 Rh2AG035700 Rh2BG034400 Rh2BG034600 Rh2BG034900 Rh2BG529600 Rh2CG035600 Rh2CG036000 Rh2CG503200 Rh2DG035100 Rh2DG035500 Rh5AG392000 Rh5AG392100 Rh5BG404500 Rh5BG404600 Rh5CG428200 Rh5CG428600 Rh5DG420300
rosa_wichuraiana	Rw2G002780 Rw2G002790 Rw2G002810 Rw5G036960 Rw5G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	347
Acc36I	ACCTGC	1 cut(s)	347
AciI	CCGC	4 cut(s)	128, 135, 380, 458
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	2 cut(s)	247, 467
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	2 cut(s)	95, 180
AfiI	CCNNNNNNNGG	1 cut(s)	134
AgsI	TTSAA	2 cut(s)	202, 284
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AluBI	AGCT	3 cut(s)	41, 86, 174
AluI	AGCT	3 cut(s)	41, 86, 174
Alw21I	GWGCWC	1 cut(s)	433
Alw26I	GTCTC	1 cut(s)	99
AoxI	GGCC	2 cut(s)	352, 367
ApeKI	GCWGC	4 cut(s)	83, 140, 161, 446
ApoI	RAATTY	2 cut(s)	247, 467
AspLEI	GCGC	2 cut(s)	140, 362
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	328
BaeGI	GKGCMC	1 cut(s)	492
Bbv12I	GWGCWC	1 cut(s)	433
BbvI	GCAGC	4 cut(s)	95, 127, 148, 433
BccI	CCATC	1 cut(s)	25
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	2 cut(s)	38, 485
BfmI	CTRYAG	2 cut(s)	42, 87
BfoI	RGCGCY	1 cut(s)	141
BfuAI	ACCTGC	1 cut(s)	347
BisI	GCNGC	5 cut(s)	84, 136, 141, 162, 447
BlsI	GCNGC	5 cut(s)	85, 137, 142, 163, 448
Bme1390I	CCNGG	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	178
BpmI	CTGGAG	1 cut(s)	272
BpuMI	CCSGG	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	97
BsaJI	CCNNGG	2 cut(s)	225, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse118I	RCCGGY	1 cut(s)	350
Bse3DI	GCAATG	1 cut(s)	69
BseDI	CCNNGG	2 cut(s)	225, 240
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMI	GCAATG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	423
BseSI	GKGCMC	1 cut(s)	492
BseXI	GCAGC	4 cut(s)	95, 127, 148, 433
BsgI	GTGCAG	1 cut(s)	325
BshFI	GGCC	2 cut(s)	354, 369
BsiHKAI	GWGCWC	1 cut(s)	433
BsiSI	CCGG	2 cut(s)	132, 351
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	99
BsmBI	CGTCTC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	110
BsnI	GGCC	2 cut(s)	354, 369
Bsp1286I	GDGCHC	2 cut(s)	433, 492
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	4 cut(s)	128, 135, 380, 458
BspANI	GGCC	2 cut(s)	354, 369
BspLI	GGNNCC	1 cut(s)	26
BspMI	ACCTGC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	350
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	2 cut(s)	225, 240
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	1 cut(s)	240
Bst4CI	ACNGT	3 cut(s)	58, 124, 226
BstBAI	YACGTR	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	352
BstDSI	CCRYGG	1 cut(s)	225
BstEII	GGTNACC	1 cut(s)	235
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	2 cut(s)	140, 362
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 366, 398
BstPI	GGTNACC	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	130
BstSFI	CTRYAG	2 cut(s)	42, 87
BstSLI	GKGCMC	1 cut(s)	492
BstSNI	TACGTA	1 cut(s)	97
BstV1I	GCAGC	4 cut(s)	95, 127, 148, 433
BsuRI	GGCC	2 cut(s)	354, 369
BtgI	CCRYGG	1 cut(s)	225
BtsI	GCAGTG	2 cut(s)	54, 355
BtsIMutI	CAGTG	2 cut(s)	54, 355
BveI	ACCTGC	1 cut(s)	347
Cac8I	GCNNGC	1 cut(s)	352
CfoI	GCGC	2 cut(s)	140, 362
Cfr10I	RCCGGY	1 cut(s)	350
CseI	GACGC	1 cut(s)	306
Csp6I	GTAC	2 cut(s)	94, 179
CviAII	CATG	2 cut(s)	13, 156
CviJI	RGCY	8 cut(s)	11, 41, 86, 161, 174, 230, 354, 369
CviKI_1	RGCY	8 cut(s)	11, 41, 86, 161, 174, 230, 354, 369
CviQI	GTAC	2 cut(s)	94, 179
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	1 cut(s)	352
Eco105I	TACGTA	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	240
Eco57I	CTGAAG	1 cut(s)	384
Eco91I	GGTNACC	1 cut(s)	235
EcoO65I	GGTNACC	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	2 cut(s)	16, 159
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	2 cut(s)	12, 155
FauI	CCCGC	1 cut(s)	135
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	5 cut(s)	84, 136, 141, 162, 447
Fsp4HI	GCNGC	5 cut(s)	84, 136, 141, 162, 447
FspBI	CTAG	2 cut(s)	38, 485
GlaI	GCGC	2 cut(s)	139, 361
GluI	GCNGC	5 cut(s)	84, 136, 141, 162, 447
GsuI	CTGGAG	1 cut(s)	272
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	354, 369
HapII	CCGG	2 cut(s)	132, 351
HgaI	GACGC	1 cut(s)	306
HhaI	GCGC	2 cut(s)	140, 362
Hin1II	CATG	2 cut(s)	16, 159
Hin6I	GCGC	2 cut(s)	138, 360
HinP1I	GCGC	2 cut(s)	138, 360
HpaII	CCGG	2 cut(s)	132, 351
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	2 cut(s)	253, 289
Hpy8I	GTNNAC	1 cut(s)	207
HpyAV	CCTTC	2 cut(s)	206, 359
HpyCH4III	ACNGT	3 cut(s)	58, 124, 226
HpyCH4IV	ACGT	2 cut(s)	96, 150
HpyCH4V	TGCA	3 cut(s)	261, 342, 401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 366, 398
HpySE526I	ACGT	2 cut(s)	96, 150
Hsp92II	CATG	2 cut(s)	16, 159
HspAI	GCGC	2 cut(s)	138, 360
KroI	GCCGGC	1 cut(s)	350
KroNI	GCCGGC	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	2 cut(s)	397, 436
LpnPI	CCDG	6 cut(s)	41, 145, 302, 352, 364, 456
Lsp1109I	GCAGC	4 cut(s)	95, 127, 148, 433
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	2 cut(s)	38, 485
MaeII	ACGT	2 cut(s)	96, 150
MaeIII	GTNAC	2 cut(s)	69, 235
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MhlI	GDGCHC	2 cut(s)	433, 492
MluCI	AATT	3 cut(s)	247, 303, 467
MmeI	TCCRAC	2 cut(s)	82, 98
MnlI	CCTC	2 cut(s)	406, 444
MroNI	GCCGGC	1 cut(s)	350
MseI	TTAA	1 cut(s)	183
MspI	CCGG	2 cut(s)	132, 351
MspR9I	CCNGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	59, 366, 398
NaeI	GCCGGC	1 cut(s)	352
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	1 cut(s)	3
NgoMIV	GCCGGC	1 cut(s)	350
NlaIII	CATG	2 cut(s)	16, 159
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	69
PaqCI	CACCTGC	1 cut(s)	347
PdiI	GCCGGC	1 cut(s)	352
PkrI	GCNGC	5 cut(s)	85, 137, 142, 163, 448
Ppu21I	YACGTR	1 cut(s)	97
PspEI	GGTNACC	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	26
RsaI	GTAC	2 cut(s)	95, 180
RsaNI	GTAC	2 cut(s)	94, 179
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	5 cut(s)	84, 136, 141, 162, 447
Sau3AI	GATC	1 cut(s)	3
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	2 cut(s)	433, 492
SetI	ASST	8 cut(s)	30, 43, 88, 99, 153, 176, 341, 378
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	2 cut(s)	42, 87
SnaBI	TACGTA	1 cut(s)	97
Sse9I	AATT	3 cut(s)	247, 303, 467
SsiI	CCGC	4 cut(s)	128, 135, 380, 458
SspMI	CTAG	2 cut(s)	38, 485
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	3 cut(s)	58, 124, 226
TaiI	ACGT	2 cut(s)	99, 153
TaqI	TCGA	1 cut(s)	252
TasI	AATT	3 cut(s)	247, 303, 467
TatI	WGTACW	1 cut(s)	178
TauI	GCSGC	1 cut(s)	138
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	2 cut(s)	54, 362
TseFI	GTSAC	1 cut(s)	69
TseI	GCWGC	4 cut(s)	83, 140, 161, 446
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	2 cut(s)	29, 144
TspRI	CASTG	2 cut(s)	54, 362
XapI	RAATTY	2 cut(s)	247, 467
XspI	CTAG	2 cut(s)	38, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.