Prupe.7G245900_v2.0.a1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000974
Physical Location & Seq
Forward (+)
20943548 .. 20944386
839 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G245900.1

Sequence Viewer

Length: 528 bp
ATGGGGGCTAAAACCATGAATATGATCCTTGCTATAGCAGTTGCAGTGTTCATGCTACATGGAACAGACGCTGCAGAATACACAGTAGGAGACAACCTGGGTTGGACCATTCCACCGGGTGGCGCCGCCACGTATGCTGCATGGGCTGCCGCTCATAGCTTGGTAGTAAACGACATTCTAGCCTTTAACTTTGAAGTAGGAGAACAAGACTTGGCTTTGGTGACCAAGGAGGATTTTGATGCGTGCAACACCGCGGACCCCTTAGTTGTGTTCAAAGAACCAGGAGAATTTCAATTTCTAAAAGAGGGCACGTTCTATTTGACCTGCACCTTCGCCGGCCATTGCACCAAAGGCCAAAAGATTGCCCTTTACTTCGCTCCCACTGCATCTCCAAGTCCAGCTCCAAGTCCAAGTCAAAGTCAGAGCGCTGATGATGCTGATGAACAATATGCTGCCGCAGTCAAATTTGTGTCCAAGAAAGAATATGGCTTCAAGAAAATAATACCTGCAACGATCAAATCTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

176

Amino Acids

18.67

Weight (kDa)

4.82

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 332, 514
AccB1I GGYRCC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 119
AccBSI CCGCTC 1 cut(s) 152
AccII CGCG 1 cut(s) 254
AciI CCGC 5 cut(s) 126, 150, 252, 254, 456
AclWI GGATC 1 cut(s) 19
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 2 cut(s) 287, 464
AcyI GRCGYC 1 cut(s) 123
AdeI CACNNNGTG 1 cut(s) 119
AfeI AGCGCT 1 cut(s) 427
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 4 cut(s) 194, 274, 293, 493
AjnI CCWGG 2 cut(s) 96, 280
AluBI AGCT 2 cut(s) 159, 401
AluI AGCT 2 cut(s) 159, 401
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 1 cut(s) 19
AlwNI CAGNNNCTG 1 cut(s) 71
Aor51HI AGCGCT 1 cut(s) 427
AoxI GGCC 2 cut(s) 337, 352
ApeKI GCWGC 4 cut(s) 71, 137, 146, 452
ApoI RAATTY 2 cut(s) 287, 464
AspLEI GCGC 2 cut(s) 125, 428
AspS9I GGNCC 2 cut(s) 105, 256
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 232
AvaII GGWCC 2 cut(s) 105, 256
BaeGI GKGCMC 1 cut(s) 311
BanI GGYRCC 1 cut(s) 122
BbvI GCAGC 4 cut(s) 58, 124, 133, 439
BciT130I CCWGG 2 cut(s) 98, 282
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 2 cut(s) 179, 526
BfmI CTRYAG 2 cut(s) 33, 72
BfoI RGCGCY 2 cut(s) 126, 429
BfuAI ACCTGC 2 cut(s) 332, 514
BisI GCNGC 7 cut(s) 72, 126, 138, 147, 150, 453, 456
BlsI GCNGC 7 cut(s) 73, 127, 139, 148, 151, 454, 457
Bme1390I CCNGG 3 cut(s) 98, 117, 282
Bme18I GGWCC 2 cut(s) 105, 256
BmgT120I GGNCC 2 cut(s) 105, 256
BmiI GGNNCC 2 cut(s) 124, 258
BmrFI CCNGG 3 cut(s) 98, 117, 282
BmsI GCATC 3 cut(s) 229, 395, 424
BpuMI CCSGG 1 cut(s) 117
BsaAI YACGTR 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 3 cut(s) 97, 225, 252
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse118I RCCGGY 1 cut(s) 335
Bse3DI GCAATG 1 cut(s) 340
BseBI CCWGG 2 cut(s) 98, 282
BseDI CCNNGG 3 cut(s) 97, 225, 252
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 340
BseSI GKGCMC 1 cut(s) 311
BseXI GCAGC 4 cut(s) 58, 124, 133, 439
BsgI GTGCAG 1 cut(s) 310
Bsh1236I CGCG 1 cut(s) 254
BshFI GGCC 2 cut(s) 339, 354
BshNI GGYRCC 1 cut(s) 122
BsiSI CCGG 2 cut(s) 116, 336
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 84
BsnI GGCC 2 cut(s) 339, 354
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 2 cut(s) 24, 513
BspACI CCGC 5 cut(s) 126, 150, 252, 254, 456
BspANI GGCC 2 cut(s) 339, 354
BspFNI CGCG 1 cut(s) 254
BspLI GGNNCC 2 cut(s) 124, 258
BspMAI CTGCAG 1 cut(s) 76
BspMI ACCTGC 2 cut(s) 332, 514
BspPI GGATC 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 122
BsrBI CCGCTC 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 340
BsrFI RCCGGY 1 cut(s) 335
BssAI RCCGGY 1 cut(s) 335
BssECI CCNNGG 3 cut(s) 97, 225, 252
BssMI GATC 2 cut(s) 24, 513
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 225
Bst2UI CCWGG 2 cut(s) 98, 282
Bst4CI ACNGT 1 cut(s) 85
BstACI GRCGYC 1 cut(s) 123
BstAPI GCANNNNNTGC 1 cut(s) 146
BstBAI YACGTR 1 cut(s) 132
BstC8I GCNNGC 2 cut(s) 244, 337
BstDEI CTNAG 1 cut(s) 262
BstDSI CCRYGG 1 cut(s) 252
BstEII GGTNACC 1 cut(s) 220
BstFNI CGCG 1 cut(s) 254
BstH2I RGCGCY 2 cut(s) 126, 429
BstHHI GCGC 2 cut(s) 125, 428
BstKTI GATC 2 cut(s) 27, 516
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 2 cut(s) 24, 513
BstMWI GCNNNNNNNGC 6 cut(s) 134, 143, 146, 351, 383, 434
BstNI CCWGG 2 cut(s) 98, 282
BstPI GGTNACC 1 cut(s) 220
BstSCI CCNGG 3 cut(s) 96, 115, 280
BstSFI CTRYAG 2 cut(s) 33, 72
BstSLI GKGCMC 1 cut(s) 311
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 4 cut(s) 58, 124, 133, 439
BsuRI GGCC 2 cut(s) 339, 354
BtgI CCRYGG 1 cut(s) 252
BtsI GCAGTG 2 cut(s) 51, 381
BtsIMutI CAGTG 2 cut(s) 51, 381
BveI ACCTGC 2 cut(s) 332, 514
Cac8I GCNNGC 2 cut(s) 244, 337
CaiI CAGNNNCTG 1 cut(s) 71
CfoI GCGC 2 cut(s) 125, 428
Cfr10I RCCGGY 1 cut(s) 335
Cfr13I GGNCC 2 cut(s) 105, 256
Cfr42I CCGCGG 1 cut(s) 255
CseI GACGC 1 cut(s) 77
CviAII CATG 4 cut(s) 16, 52, 59, 141
CviJI RGCY 9 cut(s) 8, 146, 159, 182, 215, 339, 354, 401, 489
CviKI_1 RGCY 9 cut(s) 8, 146, 159, 182, 215, 339, 354, 401, 489
DdeI CTNAG 1 cut(s) 262
DinI GGCGCC 1 cut(s) 124
DpnI GATC 2 cut(s) 26, 515
DpnII GATC 2 cut(s) 24, 513
DraIII CACNNNGTG 1 cut(s) 119
EaeI YGGCCR 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 225
Eco47I GGWCC 2 cut(s) 105, 256
Eco47III AGCGCT 1 cut(s) 427
Eco91I GGTNACC 1 cut(s) 220
EcoO65I GGTNACC 1 cut(s) 220
EcoRII CCWGG 2 cut(s) 96, 280
EcoT14I CCWWGG 1 cut(s) 225
EgeI GGCGCC 1 cut(s) 124
EheI GGCGCC 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 4 cut(s) 19, 55, 62, 144
FatI CATG 4 cut(s) 15, 51, 58, 140
Fnu4HI GCNGC 7 cut(s) 72, 126, 138, 147, 150, 453, 456
Fsp4HI GCNGC 7 cut(s) 72, 126, 138, 147, 150, 453, 456
FspBI CTAG 2 cut(s) 179, 526
GlaI GCGC 2 cut(s) 124, 427
GluI GCNGC 7 cut(s) 72, 126, 138, 147, 150, 453, 456
HaeII RGCGCY 2 cut(s) 126, 429
HaeIII GGCC 2 cut(s) 339, 354
HapII CCGG 2 cut(s) 116, 336
HgaI GACGC 1 cut(s) 77
HhaI GCGC 2 cut(s) 125, 428
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 4 cut(s) 19, 55, 62, 144
Hin6I GCGC 2 cut(s) 123, 426
HinP1I GCGC 2 cut(s) 123, 426
HpaII CCGG 2 cut(s) 116, 336
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 423
Hpy188III TCNNGA 1 cut(s) 493
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 2 cut(s) 131, 311
HpyCH4V TGCA 8 cut(s) 44, 74, 140, 246, 327, 345, 386, 509
HpyF10VI GCNNNNNNNGC 6 cut(s) 134, 143, 146, 351, 383, 434
HpyF3I CTNAG 1 cut(s) 262
HpySE526I ACGT 2 cut(s) 131, 311
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 4 cut(s) 19, 55, 62, 144
HspAI GCGC 2 cut(s) 123, 426
KasI GGCGCC 1 cut(s) 122
KroI GCCGGC 1 cut(s) 335
KroNI GCCGGC 1 cut(s) 337
KspI CCGCGG 1 cut(s) 255
Kzo9I GATC 2 cut(s) 24, 513
LmnI GCTCC 2 cut(s) 382, 406
LpnPI CCDG 9 cut(s) 83, 110, 129, 267, 294, 337, 349, 411, 519
Lsp1109I GCAGC 4 cut(s) 58, 124, 133, 439
LweI GCATC 3 cut(s) 229, 395, 424
MaeI CTAG 2 cut(s) 179, 526
MaeII ACGT 2 cut(s) 131, 311
MaeIII GTNAC 1 cut(s) 220
MalI GATC 2 cut(s) 26, 515
MbiI CCGCTC 1 cut(s) 152
MboI GATC 2 cut(s) 24, 513
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 3 cut(s) 287, 293, 464
Mly113I GGCGCC 1 cut(s) 123
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 2 cut(s) 223, 298
MroNI GCCGGC 1 cut(s) 335
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 254
MspI CCGG 2 cut(s) 116, 336
MspR9I CCNGG 3 cut(s) 98, 117, 282
MvaI CCWGG 2 cut(s) 98, 282
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 6 cut(s) 134, 143, 146, 351, 383, 434
NaeI GCCGGC 1 cut(s) 337
NarI GGCGCC 1 cut(s) 123
NciI CCSGG 1 cut(s) 117
NdeII GATC 2 cut(s) 24, 513
NgoMIV GCCGGC 1 cut(s) 335
NlaIII CATG 4 cut(s) 19, 55, 62, 144
NlaIV GGNNCC 2 cut(s) 124, 258
NmuCI GTSAC 1 cut(s) 220
PdiI GCCGGC 1 cut(s) 337
PflMI CCANNNNNTGG 1 cut(s) 119
PkrI GCNGC 7 cut(s) 73, 127, 139, 148, 151, 454, 457
PluTI GGCGCC 1 cut(s) 126
Ppu21I YACGTR 1 cut(s) 132
Psp6I CCWGG 2 cut(s) 96, 280
PspEI GGTNACC 1 cut(s) 220
PspGI CCWGG 2 cut(s) 96, 280
PspN4I GGNNCC 2 cut(s) 124, 258
PspPI GGNCC 2 cut(s) 105, 256
PstI CTGCAG 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 20
SacII CCGCGG 1 cut(s) 255
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 7 cut(s) 72, 126, 138, 147, 150, 453, 456
Sau3AI GATC 2 cut(s) 24, 513
Sau96I GGNCC 2 cut(s) 105, 256
ScrFI CCNGG 3 cut(s) 98, 117, 282
SduI GDGCHC 1 cut(s) 311
SetI ASST 8 cut(s) 99, 134, 161, 314, 326, 332, 403, 508
SfaNI GCATC 3 cut(s) 229, 395, 424
SfcI CTRYAG 2 cut(s) 33, 72
SfoI GGCGCC 1 cut(s) 124
Sfr303I CCGCGG 1 cut(s) 255
SgrBI CCGCGG 1 cut(s) 255
SinI GGWCC 2 cut(s) 105, 256
SmiMI CAYNNNNRTG 1 cut(s) 20
Sse9I AATT 3 cut(s) 287, 293, 464
SsiI CCGC 5 cut(s) 126, 150, 252, 254, 456
SspDI GGCGCC 1 cut(s) 122
SspMI CTAG 2 cut(s) 179, 526
StyD4I CCNGG 3 cut(s) 96, 115, 280
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 2 cut(s) 134, 314
TasI AATT 3 cut(s) 287, 293, 464
TauI GCSGC 3 cut(s) 128, 152, 458
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 2 cut(s) 51, 388
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 4 cut(s) 71, 137, 146, 452
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 3 cut(s) 32, 40, 456
TspRI CASTG 2 cut(s) 51, 388
Van91I CCANNNNNTGG 1 cut(s) 119
VpaK11BI GGWCC 2 cut(s) 105, 256
XapI RAATTY 2 cut(s) 287, 464
XspI CTAG 2 cut(s) 179, 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.