Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000974

Physical Location & Seq

Genomic Coordinates Forward (+)

89837533 .. 89838114

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00153020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAAAACCATGAACGTGATAGTTGTTGTTCTCGCAATGGCAGTAGTATTGTTAAATGGAGCAGAAGCTGTACTATACACAGTTGGAGACGATTTGGGTTGGGCTATTCCTCCTGGTGGTGCTGCCACTTATGCTGCATGGGCTGCCGAGCATAGCTTTGTAGTCAACGATGAGCTAGAGTTTGACTTTGCAGTAGGTGAACAAGACTTGGCCTTAGTAACCAAGGATGATTACGACAGTTGTAACACGGCGGATCCCTTGTCGCTATTCCAGGAGGCAGTTACACTTCAGTTTATCGCAAGCGACACATTTTATTTCACCTCCACCTTGGCCGGGCACTGCACCAAAGGCCAAAAGATTGCCATTTACATCGGCGCTGCCCTGCCTCCTAGTCCCAGTCCGGTTCCCAGTCCAACTCCATGTCCTTCTTCATCAAGTGCTGATGACGCCCTAACGGCCAAATTTGTGTCTCACAAGATCATGGCCAAAGGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

165

Amino Acids

17.32

Weight (kDa)

4.29

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	42 - 118	9.9e-13	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000974)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02910 FvH4_1g02970 FvH4_6g40671
malus_domestica	MD02G1028900.v1.1 MD02G1029100.v1.1 MD15G1170500.v1.1
prunus_persica	Prupe.7G245800_v2.0.a1 Prupe.7G245900_v2.0.a1 Prupe.7G246100_v2.0.a1
pyrus_communis	pycom02g02370 pycom02g02380 pycom02g02390 pycom02g02400 pycom15g15200
rosa_chinensis	RchiOBHm_Chr2g0088061 RchiOBHm_Chr2g0088081 RchiOBHm_Chr2g0156091 RchiOBHm_Chr2g0156121 RchiOBHm_Chr2g0156131 RchiOBHm_Chr5g0060121 RchiOBHm_Chr5g0060181
rosa_multiflora	Rmu_co8398493.1_g000001 Rmu_sc0000260.1_g000020 Rmu_sc0000493.1_g000045 Rmu_sc0003275.1_g000013 Rmu_sc0003275.1_g000020 Rmu_sc0003275.1_g000042 Rmu_sc0011922.1_g000011
rosa_roxburghii	Rroxscaffold_1G00020520 Rroxscaffold_1G00020540 Rroxscaffold_2G00152970 Rroxscaffold_2G00152990 Rroxscaffold_2G00153000 Rroxscaffold_2G00153020
rosa_rugosa	Rorug01G0480500 Rorug01G0480600 Rorug01G0480800 Rorug02G0451600 Rorug02G0451600 Rorug05G0328200
rosa_samantha	Rh2AG035400 Rh2AG035700 Rh2BG034400 Rh2BG034600 Rh2BG034900 Rh2BG529600 Rh2CG035600 Rh2CG036000 Rh2CG503200 Rh2DG035100 Rh2DG035500 Rh5AG392000 Rh5AG392100 Rh5BG404500 Rh5BG404600 Rh5CG428200 Rh5CG428600 Rh5DG420300
rosa_wichuraiana	Rw2G002780 Rw2G002790 Rw2G002810 Rw5G036960 Rw5G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	251
AclWI	GGATC	2 cut(s)	248, 261
AcoI	YGGCCR	3 cut(s)	330, 456, 483
AcsI	RAATTY	1 cut(s)	461
AcuI	CTGAAG	1 cut(s)	272
AcyI	GRCGYC	1 cut(s)	447
AfaI	GTAC	1 cut(s)	72
AfiI	CCNNNNNNNGG	2 cut(s)	116, 333
AjnI	CCWGG	2 cut(s)	112, 270
AluBI	AGCT	3 cut(s)	68, 156, 175
AluI	AGCT	3 cut(s)	68, 156, 175
Alw26I	GTCTC	2 cut(s)	81, 474
AlwI	GGATC	2 cut(s)	248, 261
AlwNI	CAGNNNCTG	1 cut(s)	68
AoxI	GGCC	5 cut(s)	210, 330, 349, 456, 483
ApeKI	GCWGC	4 cut(s)	122, 134, 143, 377
ApoI	RAATTY	1 cut(s)	461
AspLEI	GCGC	1 cut(s)	377
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	2 cut(s)	209, 310
BaeGI	GKGCMC	1 cut(s)	339
BalI	TGGCCA	1 cut(s)	485
BamHI	GGATCC	1 cut(s)	253
BbvI	GCAGC	4 cut(s)	109, 121, 130, 364
BceAI	ACGGC	2 cut(s)	264, 471
BciT130I	CCWGG	2 cut(s)	114, 272
BcnI	CCSGG	1 cut(s)	334
BcoDI	GTCTC	2 cut(s)	81, 474
BfaI	CTAG	3 cut(s)	176, 390, 496
BfoI	RGCGCY	1 cut(s)	378
BglI	GCCNNNNNGGC	1 cut(s)	455
BisI	GCNGC	4 cut(s)	123, 135, 144, 378
BlsI	GCNGC	4 cut(s)	124, 136, 145, 379
Bme1390I	CCNGG	3 cut(s)	114, 272, 334
BmiI	GGNNCC	2 cut(s)	255, 405
BmrFI	CCNGG	3 cut(s)	114, 272, 334
BmrI	ACTGGG	2 cut(s)	390, 402
BmuI	ACTGGG	2 cut(s)	390, 402
BpuMI	CCSGG	1 cut(s)	334
BsaHI	GRCGYC	1 cut(s)	447
BsaJI	CCNNGG	2 cut(s)	222, 327
BsaWI	WCCGGW	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 333
Bse1I	ACTGG	2 cut(s)	396, 408
Bse3DI	GCAATG	1 cut(s)	42
BseBI	CCWGG	2 cut(s)	114, 272
BseDI	CCNNGG	2 cut(s)	222, 327
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	2 cut(s)	116, 333
BseMI	GCAATG	1 cut(s)	42
BseNI	ACTGG	2 cut(s)	396, 408
BseSI	GKGCMC	1 cut(s)	339
BseXI	GCAGC	4 cut(s)	109, 121, 130, 364
BsgI	GTGCAG	1 cut(s)	325
BshFI	GGCC	5 cut(s)	212, 332, 351, 458, 485
BsiSI	CCGG	2 cut(s)	333, 401
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	2 cut(s)	116, 333
BsmAI	GTCTC	2 cut(s)	81, 474
BsmBI	CGTCTC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	378
BsnI	GGCC	5 cut(s)	212, 332, 351, 458, 485
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	2 cut(s)	253, 477
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	5 cut(s)	212, 332, 351, 458, 485
BspLI	GGNNCC	2 cut(s)	255, 405
BspPI	GGATC	2 cut(s)	248, 261
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	2 cut(s)	396, 408
BssECI	CCNNGG	2 cut(s)	222, 327
BssMI	GATC	2 cut(s)	253, 477
BssNI	GRCGYC	1 cut(s)	447
BssT1I	CCWWGG	2 cut(s)	222, 327
Bst2UI	CCWGG	2 cut(s)	114, 272
Bst4CI	ACNGT	2 cut(s)	82, 239
BstACI	GRCGYC	1 cut(s)	447
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	1 cut(s)	214
BstF5I	GGATG	1 cut(s)	232
BstH2I	RGCGCY	1 cut(s)	378
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	2 cut(s)	256, 480
BstMAI	GTCTC	2 cut(s)	81, 474
BstMBI	GATC	2 cut(s)	253, 477
BstMWI	GCNNNNNNNGC	6 cut(s)	131, 140, 143, 348, 446, 455
BstNI	CCWGG	2 cut(s)	114, 272
BstSCI	CCNGG	3 cut(s)	112, 270, 332
BstSLI	GKGCMC	1 cut(s)	339
BstV1I	GCAGC	4 cut(s)	109, 121, 130, 364
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BsuRI	GGCC	5 cut(s)	212, 332, 351, 458, 485
BtsCI	GGATG	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	337
Cac8I	GCNNGC	1 cut(s)	301
CaiI	CAGNNNCTG	1 cut(s)	68
CfoI	GCGC	1 cut(s)	377
CseI	GACGC	1 cut(s)	455
Csp6I	GTAC	1 cut(s)	71
CviAII	CATG	4 cut(s)	10, 138, 420, 481
CviQI	GTAC	1 cut(s)	71
DdeI	CTNAG	1 cut(s)	214
DpnI	GATC	2 cut(s)	255, 479
DpnII	GATC	2 cut(s)	253, 477
EaeI	YGGCCR	3 cut(s)	330, 456, 483
EciI	GGCGGA	1 cut(s)	266
Eco130I	CCWWGG	2 cut(s)	222, 327
Eco57I	CTGAAG	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	112, 270
EcoT14I	CCWWGG	2 cut(s)	222, 327
ErhI	CCWWGG	2 cut(s)	222, 327
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	4 cut(s)	13, 141, 423, 484
FaiI	YATR	7 cut(s)	11, 76, 132, 139, 153, 421, 482
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	4 cut(s)	9, 137, 419, 480
Fnu4HI	GCNGC	4 cut(s)	123, 135, 144, 378
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	4 cut(s)	123, 135, 144, 378
FspBI	CTAG	3 cut(s)	176, 390, 496
GlaI	GCGC	1 cut(s)	376
GluI	GCNGC	4 cut(s)	123, 135, 144, 378
HaeII	RGCGCY	1 cut(s)	378
HaeIII	GGCC	5 cut(s)	212, 332, 351, 458, 485
HapII	CCGG	2 cut(s)	333, 401
HgaI	GACGC	1 cut(s)	455
HhaI	GCGC	1 cut(s)	377
Hin1I	GRCGYC	1 cut(s)	447
Hin1II	CATG	4 cut(s)	13, 141, 423, 484
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HpaII	CCGG	2 cut(s)	333, 401
HphI	GGTGA	2 cut(s)	209, 310
Hpy166II	GTNNAC	2 cut(s)	166, 200
Hpy8I	GTNNAC	2 cut(s)	166, 200
HpyAV	CCTTC	1 cut(s)	435
HpyCH4III	ACNGT	2 cut(s)	82, 239
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	3 cut(s)	137, 191, 342
HpyF10VI	GCNNNNNNNGC	6 cut(s)	131, 140, 143, 348, 446, 455
HpyF3I	CTNAG	1 cut(s)	214
HpySE526I	ACGT	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	447
Hsp92II	CATG	4 cut(s)	13, 141, 423, 484
HspAI	GCGC	1 cut(s)	375
Kzo9I	GATC	2 cut(s)	253, 477
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	9 cut(s)	99, 126, 257, 284, 346, 395, 409, 414, 421
Lsp1109I	GCAGC	4 cut(s)	109, 121, 130, 364
MaeI	CTAG	3 cut(s)	176, 390, 496
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	3 cut(s)	217, 242, 280
MalI	GATC	2 cut(s)	255, 479
MboI	GATC	2 cut(s)	253, 477
MboII	GAAGA	1 cut(s)	420
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	339
MlsI	TGGCCA	1 cut(s)	485
MluCI	AATT	1 cut(s)	461
MluNI	TGGCCA	1 cut(s)	485
MmeI	TCCRAC	2 cut(s)	64, 437
MnlI	CCTC	4 cut(s)	120, 268, 331, 396
Mox20I	TGGCCA	1 cut(s)	485
MscI	TGGCCA	1 cut(s)	485
MseI	TTAA	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	485
MspI	CCGG	2 cut(s)	333, 401
MspR9I	CCNGG	3 cut(s)	114, 272, 334
MvaI	CCWGG	2 cut(s)	114, 272
MwoI	GCNNNNNNNGC	6 cut(s)	131, 140, 143, 348, 446, 455
NciI	CCSGG	1 cut(s)	334
NdeII	GATC	2 cut(s)	253, 477
NlaIII	CATG	4 cut(s)	13, 141, 423, 484
NlaIV	GGNNCC	2 cut(s)	255, 405
NmeAIII	GCCGAG	1 cut(s)	172
PfoI	TCCNGGA	1 cut(s)	270
PkrI	GCNGC	4 cut(s)	124, 136, 145, 379
Psp6I	CCWGG	2 cut(s)	112, 270
PspGI	CCWGG	2 cut(s)	112, 270
PspN4I	GGNNCC	2 cut(s)	255, 405
PstNI	CAGNNNCTG	1 cut(s)	68
PsuI	RGATCY	1 cut(s)	253
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	4 cut(s)	123, 135, 144, 378
Sau3AI	GATC	2 cut(s)	253, 477
ScrFI	CCNGG	3 cut(s)	114, 272, 334
SduI	GDGCHC	1 cut(s)	339
SetI	ASST	7 cut(s)	18, 70, 158, 177, 199, 323, 329
SmiMI	CAYNNNNRTG	1 cut(s)	14
Sse9I	AATT	1 cut(s)	461
SsiI	CCGC	1 cut(s)	251
SspMI	CTAG	3 cut(s)	176, 390, 496
StyD4I	CCNGG	3 cut(s)	112, 270, 332
StyI	CCWWGG	2 cut(s)	222, 327
TaaI	ACNGT	2 cut(s)	82, 239
TaiI	ACGT	1 cut(s)	18
TasI	AATT	1 cut(s)	461
TatI	WGTACW	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	1 cut(s)	344
TseI	GCWGC	4 cut(s)	122, 134, 143, 377
TspDTI	ATGAA	3 cut(s)	17, 26, 420
TspRI	CASTG	1 cut(s)	344
XapI	RAATTY	1 cut(s)	461
XspI	CTAG	3 cut(s)	176, 390, 496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.