Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000974

Physical Location & Seq

Genomic Coordinates Forward (+)

32122446 .. 32122907

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g40671.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAAGCTGAATCATGTGATCGTGGTCCTTGTTATAGCATTGGCAGCAGCAGTGTTGCATGGAACAGAAGCCAAAAAGTATCAAGTCGGAGGCGACTTGGGTTGGACTATCCCTCCCGGCGGCGCTTCCACTTATGCTTCATGGGCTTCAAAGCACACCCTTAAAGTTGACAAGGATACTCTAGTGTTCAACTTTAAAGCAGGAGAAAATGACTCGACTATAGTAACCAAGGAGAATTATGACTCCTGCAACACCAAGGATCCGTTGTATCAAATCAAGAGTCCGGGTGTAGTTGTCGGTGCTTCCACGCCGGGCACATTTTATTTCACCTGCAGCTTCGCCGGGCACTGTCACAAGGGGCAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

123

Amino Acids

13.09

Weight (kDa)

8.78

Isoelectric Point (pI)

16.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	35 - 121	4.6e-16	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000974)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02910 FvH4_1g02970 FvH4_6g40671
malus_domestica	MD02G1028900.v1.1 MD02G1029100.v1.1 MD15G1170500.v1.1
prunus_persica	Prupe.7G245800_v2.0.a1 Prupe.7G245900_v2.0.a1 Prupe.7G246100_v2.0.a1
pyrus_communis	pycom02g02370 pycom02g02380 pycom02g02390 pycom02g02400 pycom15g15200
rosa_chinensis	RchiOBHm_Chr2g0088061 RchiOBHm_Chr2g0088081 RchiOBHm_Chr2g0156091 RchiOBHm_Chr2g0156121 RchiOBHm_Chr2g0156131 RchiOBHm_Chr5g0060121 RchiOBHm_Chr5g0060181
rosa_multiflora	Rmu_co8398493.1_g000001 Rmu_sc0000260.1_g000020 Rmu_sc0000493.1_g000045 Rmu_sc0003275.1_g000013 Rmu_sc0003275.1_g000020 Rmu_sc0003275.1_g000042 Rmu_sc0011922.1_g000011
rosa_roxburghii	Rroxscaffold_1G00020520 Rroxscaffold_1G00020540 Rroxscaffold_2G00152970 Rroxscaffold_2G00152990 Rroxscaffold_2G00153000 Rroxscaffold_2G00153020
rosa_rugosa	Rorug01G0480500 Rorug01G0480600 Rorug01G0480800 Rorug02G0451600 Rorug02G0451600 Rorug05G0328200
rosa_samantha	Rh2AG035400 Rh2AG035700 Rh2BG034400 Rh2BG034600 Rh2BG034900 Rh2BG529600 Rh2CG035600 Rh2CG036000 Rh2CG503200 Rh2DG035100 Rh2DG035500 Rh5AG392000 Rh5AG392100 Rh5BG404500 Rh5BG404600 Rh5CG428200 Rh5CG428600 Rh5DG420300
rosa_wichuraiana	Rw2G002780 Rw2G002790 Rw2G002810 Rw5G036960 Rw5G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	338
AciI	CCGC	1 cut(s)	120
AclWI	GGATC	2 cut(s)	254, 267
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	150, 190
AluBI	AGCT	2 cut(s)	7, 336
AluI	AGCT	2 cut(s)	7, 336
AlwI	GGATC	2 cut(s)	254, 267
ApeKI	GCWGC	3 cut(s)	44, 47, 333
ArsI	GACNNNNNNTTYG	2 cut(s)	265, 297
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	25
AsuC2I	CCSGG	4 cut(s)	117, 285, 312, 343
AsuHPI	GGTGA	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	25
BaeGI	GKGCMC	2 cut(s)	317, 348
BaeI	ACNNNNGTAYC	2 cut(s)	168, 201
BamHI	GGATCC	1 cut(s)	259
BbvI	GCAGC	3 cut(s)	56, 59, 345
BciVI	GTATCC	1 cut(s)	169
BcnI	CCSGG	4 cut(s)	117, 285, 312, 343
BfaI	CTAG	1 cut(s)	182
BfmI	CTRYAG	2 cut(s)	219, 331
BfoI	RGCGCY	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	338
BfuI	GTATCC	1 cut(s)	169
BisI	GCNGC	4 cut(s)	45, 48, 121, 334
BlsI	GCNGC	4 cut(s)	46, 49, 122, 335
Bme1390I	CCNGG	4 cut(s)	117, 285, 312, 343
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	4 cut(s)	117, 285, 312, 343
BpuMI	CCSGG	4 cut(s)	117, 285, 312, 343
BsaJI	CCNNGG	2 cut(s)	228, 255
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
BseDI	CCNNGG	2 cut(s)	228, 255
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseSI	GKGCMC	2 cut(s)	317, 348
BseXI	GCAGC	3 cut(s)	56, 59, 345
BsiSI	CCGG	4 cut(s)	117, 284, 311, 342
BslI	CCNNNNNNNGG	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	317, 348
Bsp143I	GATC	2 cut(s)	18, 259
BspACI	CCGC	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	261
BspMAI	CTGCAG	1 cut(s)	335
BspMI	ACCTGC	1 cut(s)	338
BspPI	GGATC	2 cut(s)	254, 267
BssECI	CCNNGG	2 cut(s)	228, 255
BssMI	GATC	2 cut(s)	18, 259
BssT1I	CCWWGG	2 cut(s)	228, 255
Bst4CI	ACNGT	1 cut(s)	350
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	2 cut(s)	21, 262
BstMBI	GATC	2 cut(s)	18, 259
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 143
BstSCI	CCNGG	4 cut(s)	115, 283, 310, 341
BstSFI	CTRYAG	2 cut(s)	219, 331
BstSLI	GKGCMC	2 cut(s)	317, 348
BstV1I	GCAGC	3 cut(s)	56, 59, 345
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BsuI	GTATCC	1 cut(s)	169
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	57, 346
BveI	ACCTGC	1 cut(s)	338
CfoI	GCGC	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	25
CviAII	CATG	3 cut(s)	14, 59, 141
CviJI	RGCY	4 cut(s)	7, 71, 146, 336
CviKI_1	RGCY	4 cut(s)	7, 71, 146, 336
DpnI	GATC	2 cut(s)	20, 261
DpnII	GATC	2 cut(s)	18, 259
DraI	TTTAAA	1 cut(s)	196
Eco130I	CCWWGG	2 cut(s)	228, 255
Eco47I	GGWCC	1 cut(s)	25
EcoT14I	CCWWGG	2 cut(s)	228, 255
ErhI	CCWWGG	2 cut(s)	228, 255
FaeI	CATG	3 cut(s)	17, 62, 144
FaiI	YATR	7 cut(s)	15, 35, 60, 135, 142, 221, 240
FatI	CATG	3 cut(s)	13, 58, 140
Fnu4HI	GCNGC	4 cut(s)	45, 48, 121, 334
Fsp4HI	GCNGC	4 cut(s)	45, 48, 121, 334
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	4 cut(s)	45, 48, 121, 334
HaeII	RGCGCY	1 cut(s)	126
HapII	CCGG	4 cut(s)	117, 284, 311, 342
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	3 cut(s)	17, 62, 144
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	4 cut(s)	10, 212, 242, 280
HpaII	CCGG	4 cut(s)	117, 284, 311, 342
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	89
Hpy188III	TCNNGA	1 cut(s)	277
Hpy8I	GTNNAC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4V	TGCA	3 cut(s)	58, 249, 333
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 143
Hsp92II	CATG	3 cut(s)	17, 62, 144
HspAI	GCGC	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	18, 259
LpnPI	CCDG	7 cut(s)	130, 186, 259, 297, 324, 343, 355
Lsp1109I	GCAGC	3 cut(s)	56, 59, 345
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	2 cut(s)	223, 350
MalI	GATC	2 cut(s)	20, 261
MboI	GATC	2 cut(s)	18, 259
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	2 cut(s)	317, 348
MluCI	AATT	1 cut(s)	235
MlyI	GAGTC	3 cut(s)	206, 236, 289
MmeI	TCCRAC	2 cut(s)	67, 83
MnlI	CCTC	2 cut(s)	83, 123
MseI	TTAA	2 cut(s)	162, 195
MspI	CCGG	4 cut(s)	117, 284, 311, 342
MspR9I	CCNGG	4 cut(s)	117, 285, 312, 343
MwoI	GCNNNNNNNGC	2 cut(s)	44, 143
NciI	CCSGG	4 cut(s)	117, 285, 312, 343
NdeII	GATC	2 cut(s)	18, 259
NlaIII	CATG	3 cut(s)	17, 62, 144
NlaIV	GGNNCC	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	350
PaqCI	CACCTGC	1 cut(s)	338
PfeI	GAWTC	1 cut(s)	10
PkrI	GCNGC	4 cut(s)	46, 49, 122, 335
PleI	GAGTC	3 cut(s)	206, 236, 288
PpsI	GAGTC	3 cut(s)	206, 236, 288
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	25
PstI	CTGCAG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	259
SaqAI	TTAA	2 cut(s)	162, 195
SatI	GCNGC	4 cut(s)	45, 48, 121, 334
Sau3AI	GATC	2 cut(s)	18, 259
Sau96I	GGNCC	1 cut(s)	25
SchI	GAGTC	3 cut(s)	206, 236, 289
ScrFI	CCNGG	4 cut(s)	117, 285, 312, 343
SduI	GDGCHC	2 cut(s)	317, 348
SetI	ASST	4 cut(s)	9, 332, 338, 368
SfcI	CTRYAG	2 cut(s)	219, 331
SinI	GGWCC	1 cut(s)	25
Sse9I	AATT	1 cut(s)	235
SsiI	CCGC	1 cut(s)	120
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	4 cut(s)	115, 283, 310, 341
StyI	CCWWGG	2 cut(s)	228, 255
TaaI	ACNGT	1 cut(s)	350
TaqI	TCGA	1 cut(s)	215
TasI	AATT	1 cut(s)	235
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	2 cut(s)	162, 195
Tru9I	TTAA	2 cut(s)	162, 195
TscAI	CASTG	2 cut(s)	57, 353
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	3 cut(s)	44, 47, 333
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	2 cut(s)	17, 129
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	2 cut(s)	57, 353
VpaK11BI	GGWCC	1 cut(s)	25
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.