Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000974

Physical Location & Seq

Genomic Coordinates Forward (+)

72855546 .. 72856404

Gene Structure 859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52497

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTTAAGTGCAACAGAAGCTAGAAAGTATAGAGTCGGAGGCGACTTGGGTTGGACTATCCCTCCCAGCGGCGCTGCCACTTATGCTTCATGGGCTTCAAAGTACACCTTCAAAGTTGACAAGGATCTTCTAGGGTTCGACTTCAAAGCAGGAAAAAATGACGTGATTGTAGTCACAAAGGAGAATTTCGACATCTGCAACACCACGAAACCATTATATCAATACAAGGGTCCAGTATTTCCTAGAGCTGCCATTTCCGGCACATATTATCTCACTTTCAGCTTCGCGGGGCACTGTGCCAAGGGCCAAAAGGTAGCCATCTATTTTGCACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

111

Amino Acids

12.22

Weight (kDa)

9.37

Isoelectric Point (pI)

7.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	18 - 103	5.1e-12	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000974)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02910 FvH4_1g02970 FvH4_6g40671
malus_domestica	MD02G1028900.v1.1 MD02G1029100.v1.1 MD15G1170500.v1.1
prunus_persica	Prupe.7G245800_v2.0.a1 Prupe.7G245900_v2.0.a1 Prupe.7G246100_v2.0.a1
pyrus_communis	pycom02g02370 pycom02g02380 pycom02g02390 pycom02g02400 pycom15g15200
rosa_chinensis	RchiOBHm_Chr2g0088061 RchiOBHm_Chr2g0088081 RchiOBHm_Chr2g0156091 RchiOBHm_Chr2g0156121 RchiOBHm_Chr2g0156131 RchiOBHm_Chr5g0060121 RchiOBHm_Chr5g0060181
rosa_multiflora	Rmu_co8398493.1_g000001 Rmu_sc0000260.1_g000020 Rmu_sc0000493.1_g000045 Rmu_sc0003275.1_g000013 Rmu_sc0003275.1_g000020 Rmu_sc0003275.1_g000042 Rmu_sc0011922.1_g000011
rosa_roxburghii	Rroxscaffold_1G00020520 Rroxscaffold_1G00020540 Rroxscaffold_2G00152970 Rroxscaffold_2G00152990 Rroxscaffold_2G00153000 Rroxscaffold_2G00153020
rosa_rugosa	Rorug01G0480500 Rorug01G0480600 Rorug01G0480800 Rorug02G0451600 Rorug02G0451600 Rorug05G0328200
rosa_samantha	Rh2AG035400 Rh2AG035700 Rh2BG034400 Rh2BG034600 Rh2BG034900 Rh2BG529600 Rh2CG035600 Rh2CG036000 Rh2CG503200 Rh2DG035100 Rh2DG035500 Rh5AG392000 Rh5AG392100 Rh5BG404500 Rh5BG404600 Rh5CG428200 Rh5CG428600 Rh5DG420300
rosa_wichuraiana	Rw2G002780 Rw2G002790 Rw2G002810 Rw5G036960 Rw5G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	287
AciI	CCGC	2 cut(s)	69, 287
AclWI	GGATC	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	184
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	3 cut(s)	99, 112, 145
AjiI	CACGTC	1 cut(s)	163
AluBI	AGCT	3 cut(s)	20, 248, 282
AluI	AGCT	3 cut(s)	20, 248, 282
AlwI	GGATC	1 cut(s)	132
AoxI	GGCC	1 cut(s)	304
ApeKI	GCWGC	2 cut(s)	74, 248
ApoI	RAATTY	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	230, 304
AvaII	GGWCC	1 cut(s)	230
BaeGI	GKGCMC	1 cut(s)	294
BbvI	GCAGC	2 cut(s)	61, 235
BccI	CCATC	1 cut(s)	326
BfaI	CTAG	4 cut(s)	21, 131, 243, 334
BfoI	RGCGCY	1 cut(s)	75
BisI	GCNGC	3 cut(s)	70, 75, 249
BlsI	GCNGC	3 cut(s)	71, 76, 250
Bme18I	GGWCC	1 cut(s)	230
BmgBI	CACGTC	1 cut(s)	163
BmgT120I	GGNCC	2 cut(s)	230, 304
BmiI	GGNNCC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	300
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	233
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	61, 235
BseYI	CCCAGC	1 cut(s)	65
Bsh1236I	CGCG	1 cut(s)	287
BshFI	GGCC	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	258
BslI	CCNNNNNNNGG	1 cut(s)	68
BsnI	GGCC	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	2 cut(s)	69, 287
BspANI	GGCC	1 cut(s)	306
BspFNI	CGCG	1 cut(s)	287
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	1 cut(s)	124
BssT1I	CCWWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	296
BstFNI	CGCG	1 cut(s)	287
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 83, 92
BstSLI	GKGCMC	1 cut(s)	294
BstUI	CGCG	1 cut(s)	287
BstV1I	GCAGC	2 cut(s)	61, 235
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	306
BtrI	CACGTC	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	292
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	230, 304
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	1 cut(s)	90
CviJI	RGCY	6 cut(s)	20, 95, 248, 282, 306, 317
CviKI_1	RGCY	6 cut(s)	20, 95, 248, 282, 306, 317
CviQI	GTAC	1 cut(s)	103
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	1 cut(s)	93
FaiI	YATR	5 cut(s)	30, 84, 91, 217, 265
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FatI	CATG	1 cut(s)	89
FauI	CCCGC	1 cut(s)	280
Fnu4HI	GCNGC	3 cut(s)	70, 75, 249
Fsp4HI	GCNGC	3 cut(s)	70, 75, 249
FspBI	CTAG	4 cut(s)	21, 131, 243, 334
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	3 cut(s)	70, 75, 249
GsaI	CCCAGC	1 cut(s)	69
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	306
HapII	CCGG	1 cut(s)	258
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	93
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	1 cut(s)	33
HpaII	CCGG	1 cut(s)	258
Hpy166II	GTNNAC	2 cut(s)	105, 118
Hpy188I	TCNGA	1 cut(s)	38
Hpy8I	GTNNAC	2 cut(s)	105, 118
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	3 cut(s)	11, 198, 329
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 83, 92
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	93
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	124
LpnPI	CCDG	4 cut(s)	79, 135, 246, 271
Lsp1109I	GCAGC	2 cut(s)	61, 235
MaeI	CTAG	4 cut(s)	21, 131, 243, 334
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	1 cut(s)	119
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	1 cut(s)	184
MlyI	GAGTC	1 cut(s)	42
MmeI	TCCRAC	2 cut(s)	16, 32
MnlI	CCTC	2 cut(s)	32, 72
MseI	TTAA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	69
MspI	CCGG	1 cut(s)	258
MvnI	CGCG	1 cut(s)	287
MwoI	GCNNNNNNNGC	3 cut(s)	17, 83, 92
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	1 cut(s)	93
NlaIV	GGNNCC	1 cut(s)	231
NmuCI	GTSAC	1 cut(s)	172
PkrI	GCNGC	3 cut(s)	71, 76, 250
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PspFI	CCCAGC	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	2 cut(s)	230, 304
PsuI	RGATCY	1 cut(s)	124
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	3 cut(s)	70, 75, 249
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	2 cut(s)	230, 304
SchI	GAGTC	1 cut(s)	42
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	6 cut(s)	22, 110, 165, 250, 284, 315
SinI	GGWCC	1 cut(s)	230
Sse9I	AATT	1 cut(s)	184
SsiI	CCGC	2 cut(s)	69, 287
SspMI	CTAG	4 cut(s)	21, 131, 243, 334
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	2 cut(s)	138, 189
TasI	AATT	1 cut(s)	184
TatI	WGTACW	1 cut(s)	102
TauI	GCSGC	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TscAI	CASTG	1 cut(s)	299
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	2 cut(s)	74, 248
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	78
TspRI	CASTG	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	1 cut(s)	184
XspI	CTAG	4 cut(s)	21, 131, 243, 334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.