Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000260.1

Orthogroup ID

OG0000974

Physical Location & Seq

Genomic Coordinates Reverse (-)

76231 .. 76857

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000260.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgaaggtgaatgttgtgatcttggtccttgttatggcattggcagtggtaatgttacgtggaacagaagctgcaaaatacagagttggagggaacttgggttggactatccctcccggcggtgctgccacttatgctgcatgggcgaagtacaccttcaaagttgacaaggatcttatagcattggcagcagcaatgttaagtgcaacagaagctagaaagtatacagtcggaggtgacttgggttggactatccctcccagcggcgctgccacttatgcttcatgggcttcaaagtacaccttcaaagttgacaaggatcttctagggttcgacttcaaagcagtaaaaaatgacgtgattgtagtcacaaaggagaatttcgacatctgcaacaccacgaaaccattatatcaatacaagggtccagtatttcttagagctgctgttggtgcagaaaattccgttgaggagtttgactcaccaattaatgcggactggagcgggaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

170

Amino Acids

18.35

Weight (kDa)

8.56

Isoelectric Point (pI)

13.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000974)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02910 FvH4_1g02970 FvH4_6g40671
malus_domestica	MD02G1028900.v1.1 MD02G1029100.v1.1 MD15G1170500.v1.1
prunus_persica	Prupe.7G245800_v2.0.a1 Prupe.7G245900_v2.0.a1 Prupe.7G246100_v2.0.a1
pyrus_communis	pycom02g02370 pycom02g02380 pycom02g02390 pycom02g02400 pycom15g15200
rosa_chinensis	RchiOBHm_Chr2g0088061 RchiOBHm_Chr2g0088081 RchiOBHm_Chr2g0156091 RchiOBHm_Chr2g0156121 RchiOBHm_Chr2g0156131 RchiOBHm_Chr5g0060121 RchiOBHm_Chr5g0060181
rosa_multiflora	Rmu_co8398493.1_g000001 Rmu_sc0000260.1_g000020 Rmu_sc0000493.1_g000045 Rmu_sc0003275.1_g000013 Rmu_sc0003275.1_g000020 Rmu_sc0003275.1_g000042 Rmu_sc0011922.1_g000011
rosa_roxburghii	Rroxscaffold_1G00020520 Rroxscaffold_1G00020540 Rroxscaffold_2G00152970 Rroxscaffold_2G00152990 Rroxscaffold_2G00153000 Rroxscaffold_2G00153020
rosa_rugosa	Rorug01G0480500 Rorug01G0480600 Rorug01G0480800 Rorug02G0451600 Rorug02G0451600 Rorug05G0328200
rosa_samantha	Rh2AG035400 Rh2AG035700 Rh2BG034400 Rh2BG034600 Rh2BG034900 Rh2BG529600 Rh2CG035600 Rh2CG036000 Rh2CG503200 Rh2DG035100 Rh2DG035500 Rh5AG392000 Rh5AG392100 Rh5BG404500 Rh5BG404600 Rh5CG428200 Rh5CG428600 Rh5DG420300
rosa_wichuraiana	Rw2G002780 Rw2G002790 Rw2G002810 Rw5G036960 Rw5G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	504
AccI	GTMKAC	1 cut(s)	224
AciI	CCGC	4 cut(s)	120, 264, 494, 504
AclWI	GGATC	2 cut(s)	180, 327
AcsI	RAATTY	2 cut(s)	379, 460
AfaI	GTAC	2 cut(s)	152, 299
AfiI	CCNNNNNNNGG	3 cut(s)	34, 119, 263
AgsI	TTSAA	4 cut(s)	160, 294, 307, 340
AjiI	CACGTC	1 cut(s)	358
AluBI	AGCT	3 cut(s)	71, 215, 443
AluI	AGCT	3 cut(s)	71, 215, 443
AlwI	GGATC	2 cut(s)	180, 327
AlwNI	CAGNNNCTG	1 cut(s)	71
ApeKI	GCWGC	7 cut(s)	71, 125, 137, 188, 191, 269, 443
ApoI	RAATTY	2 cut(s)	379, 460
AseI	ATTAAT	1 cut(s)	489
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	2 cut(s)	25, 425
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	3 cut(s)	19, 248, 474
AvaII	GGWCC	2 cut(s)	25, 425
BbvI	GCAGC	7 cut(s)	58, 112, 124, 200, 203, 256, 430
BcnI	CCSGG	1 cut(s)	117
BfaI	CTAG	2 cut(s)	216, 326
BfoI	RGCGCY	1 cut(s)	270
BisI	GCNGC	8 cut(s)	72, 126, 138, 189, 192, 265, 270, 444
BlsI	GCNGC	8 cut(s)	73, 127, 139, 190, 193, 266, 271, 445
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	2 cut(s)	25, 425
BmgBI	CACGTC	1 cut(s)	358
BmgT120I	GGNCC	2 cut(s)	25, 425
BmiI	GGNNCC	1 cut(s)	426
BmrFI	CCNGG	1 cut(s)	117
BplI	GAGNNNNNCTC	2 cut(s)	464, 496
BpuMI	CCSGG	1 cut(s)	117
BsaAI	YACGTR	1 cut(s)	59
BsaXI	ACNNNNNCTCC	4 cut(s)	97, 127, 241, 271
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 119, 263
Bse1I	ACTGG	2 cut(s)	428, 503
Bse3DI	GCAATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	3 cut(s)	34, 119, 263
BseMI	GCAATG	1 cut(s)	201
BseNI	ACTGG	2 cut(s)	428, 503
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	7 cut(s)	58, 112, 124, 200, 203, 256, 430
BseYI	CCCAGC	1 cut(s)	260
BsgI	GTGCAG	1 cut(s)	474
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	3 cut(s)	34, 119, 263
Bsp143I	GATC	3 cut(s)	18, 172, 319
BspACI	CCGC	4 cut(s)	120, 264, 494, 504
BspLI	GGNNCC	1 cut(s)	426
BspPI	GGATC	2 cut(s)	180, 327
BsrBI	CCGCTC	1 cut(s)	504
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	428, 503
BssMI	GATC	3 cut(s)	18, 172, 319
BssNAI	GTATAC	1 cut(s)	225
Bst1107I	GTATAC	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	229
BstBAI	YACGTR	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	437
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	3 cut(s)	21, 175, 322
BstMBI	GATC	3 cut(s)	18, 172, 319
BstMWI	GCNNNNNNNGC	7 cut(s)	134, 143, 188, 212, 278, 287, 452
BstSCI	CCNGG	1 cut(s)	115
BstV1I	GCAGC	7 cut(s)	58, 112, 124, 200, 203, 256, 430
BstX2I	RGATCY	2 cut(s)	172, 319
BstYI	RGATCY	2 cut(s)	172, 319
BstZ17I	GTATAC	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	358
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	51
CaiI	CAGNNNCTG	1 cut(s)	71
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	2 cut(s)	25, 425
Csp6I	GTAC	2 cut(s)	151, 298
CviAII	CATG	2 cut(s)	141, 285
CviJI	RGCY	4 cut(s)	71, 215, 290, 443
CviKI_1	RGCY	4 cut(s)	71, 215, 290, 443
CviQI	GTAC	2 cut(s)	151, 298
DdeI	CTNAG	1 cut(s)	437
DpnI	GATC	3 cut(s)	20, 174, 321
DpnII	GATC	3 cut(s)	18, 172, 319
Eco47I	GGWCC	2 cut(s)	25, 425
FaeI	CATG	2 cut(s)	144, 288
FaiI	YATR	8 cut(s)	35, 135, 142, 179, 225, 279, 286, 412
FalI	AAGNNNNNCTT	4 cut(s)	140, 172, 287, 319
FatI	CATG	2 cut(s)	140, 284
FauI	CCCGC	1 cut(s)	497
FblI	GTMKAC	1 cut(s)	224
Fnu4HI	GCNGC	8 cut(s)	72, 126, 138, 189, 192, 265, 270, 444
Fsp4HI	GCNGC	8 cut(s)	72, 126, 138, 189, 192, 265, 270, 444
FspBI	CTAG	2 cut(s)	216, 326
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	8 cut(s)	72, 126, 138, 189, 192, 265, 270, 444
GsaI	CCCAGC	1 cut(s)	264
HaeII	RGCGCY	1 cut(s)	270
HapII	CCGG	1 cut(s)	117
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	2 cut(s)	144, 288
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HincII	GTYRAC	2 cut(s)	166, 313
HindII	GTYRAC	2 cut(s)	166, 313
HinfI	GANTC	1 cut(s)	479
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	3 cut(s)	19, 248, 474
Hpy166II	GTNNAC	5 cut(s)	153, 166, 225, 300, 313
Hpy188I	TCNGA	1 cut(s)	233
Hpy8I	GTNNAC	5 cut(s)	153, 166, 225, 300, 313
HpyAV	CCTTC	2 cut(s)	166, 313
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	2 cut(s)	58, 357
HpyCH4V	TGCA	5 cut(s)	74, 140, 206, 393, 455
HpyF10VI	GCNNNNNNNGC	7 cut(s)	134, 143, 188, 212, 278, 287, 452
HpyF3I	CTNAG	1 cut(s)	437
HpySE526I	ACGT	2 cut(s)	58, 357
Hsp92II	CATG	2 cut(s)	144, 288
HspAI	GCGC	1 cut(s)	267
Kzo9I	GATC	3 cut(s)	18, 172, 319
LmnI	GCTCC	1 cut(s)	501
LpnPI	CCDG	4 cut(s)	130, 274, 441, 484
Lsp1109I	GCAGC	7 cut(s)	58, 112, 124, 200, 203, 256, 430
MaeI	CTAG	2 cut(s)	216, 326
MaeII	ACGT	2 cut(s)	58, 357
MaeIII	GTNAC	3 cut(s)	54, 236, 367
MalI	GATC	3 cut(s)	20, 174, 321
MbiI	CCGCTC	1 cut(s)	504
MboI	GATC	3 cut(s)	18, 172, 319
MboII	GAAGA	1 cut(s)	314
MflI	RGATCY	2 cut(s)	172, 319
MluCI	AATT	3 cut(s)	379, 460, 486
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	4 cut(s)	67, 83, 211, 227
MnlI	CCTC	5 cut(s)	83, 123, 227, 267, 463
MseI	TTAA	2 cut(s)	200, 489
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	7 cut(s)	134, 143, 188, 212, 278, 287, 452
NciI	CCSGG	1 cut(s)	117
NdeII	GATC	3 cut(s)	18, 172, 319
NlaIII	CATG	2 cut(s)	144, 288
NlaIV	GGNNCC	1 cut(s)	426
NmuCI	GTSAC	2 cut(s)	236, 367
PkrI	GCNGC	8 cut(s)	73, 127, 139, 190, 193, 266, 271, 445
PleI	GAGTC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	473
Ppu21I	YACGTR	1 cut(s)	59
PshBI	ATTAAT	1 cut(s)	489
PspFI	CCCAGC	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	426
PspPI	GGNCC	2 cut(s)	25, 425
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	2 cut(s)	172, 319
RsaI	GTAC	2 cut(s)	152, 299
RsaNI	GTAC	2 cut(s)	151, 298
SaqAI	TTAA	2 cut(s)	200, 489
SatI	GCNGC	8 cut(s)	72, 126, 138, 189, 192, 265, 270, 444
Sau3AI	GATC	3 cut(s)	18, 172, 319
Sau96I	GGNCC	2 cut(s)	25, 425
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	1 cut(s)	117
SetI	ASST	9 cut(s)	9, 61, 73, 158, 217, 238, 305, 360, 445
SinI	GGWCC	2 cut(s)	25, 425
Sse9I	AATT	3 cut(s)	379, 460, 486
SsiI	CCGC	4 cut(s)	120, 264, 494, 504
SspMI	CTAG	2 cut(s)	216, 326
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	2 cut(s)	61, 360
TaqI	TCGA	2 cut(s)	333, 384
TasI	AATT	3 cut(s)	379, 460, 486
TatI	WGTACW	2 cut(s)	150, 297
TauI	GCSGC	1 cut(s)	267
Tru1I	TTAA	2 cut(s)	200, 489
Tru9I	TTAA	2 cut(s)	200, 489
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	2 cut(s)	236, 367
TseI	GCWGC	7 cut(s)	71, 125, 137, 188, 191, 269, 443
Tsp45I	GTSAC	2 cut(s)	236, 367
TspDTI	ATGAA	2 cut(s)	17, 273
TspGWI	ACGGA	1 cut(s)	454
TspRI	CASTG	1 cut(s)	51
VpaK11BI	GGWCC	2 cut(s)	25, 425
VspI	ATTAAT	1 cut(s)	489
XapI	RAATTY	2 cut(s)	379, 460
XmiI	GTMKAC	1 cut(s)	224
XspI	CTAG	2 cut(s)	216, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.