Prupe.7G246100_v2.0.a1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000974
Physical Location & Seq
Forward (+)
20949651 .. 20950633
983 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G246100.1

Sequence Viewer

Length: 486 bp
ATGAATAATATTATTGTGAATAATGCGATGCTCCTTGTTATAGCAGCGGTAGCAGCATCAATGATGATGCTGCCTACGGCAGAAGCTGCATTGTATACCGTCGGAGACGACTTGGGTTGGACTATTCCTCCGGGCGGTGCTGCCACTTATGCTGCCTGGGCGGCCAAGCATAGCTTTGTAGTCAAAGATATTCTAGTGTTTAACTTTTCTGCCGGAGAAGATGACTTGGCTGTGGTAACCAAGGAAGATTTTGACACGTGTAACACCACGAACCCCTTATATGAATTCGAAGAACCAGCGACACTTCAATTTCTTGCAAGCGATACATTTTATTTCACGAGCACCTTGGCCGGGCACTGCTCCAAAGGCCAGAAGTTAGCCATTTACTTCGCTCCCTCTTCAACCGATTCTCCAAGTCCAAGTCCAACGTCCTCCTTCCCCCTCAAATTTGTGTCTCAAAAGATCATGCAGGGCACAAGAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

162

Amino Acids

17.28

Weight (kDa)

4.53

Isoelectric Point (pI)

35.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 95
AciI CCGC 3 cut(s) 47, 135, 161
AcoI YGGCCR 2 cut(s) 162, 348
AcsI RAATTY 2 cut(s) 284, 446
AcvI CACGTG 1 cut(s) 258
AfiI CCNNNNNNNGG 2 cut(s) 134, 351
AflIII ACRYGT 2 cut(s) 255, 257
AgsI TTSAA 2 cut(s) 308, 402
AjnI CCWGG 1 cut(s) 155
AluBI AGCT 2 cut(s) 86, 174
AluI AGCT 2 cut(s) 86, 174
Alw21I GWGCWC 1 cut(s) 344
Alw26I GTCTC 2 cut(s) 99, 459
AlwNI CAGNNNCTG 1 cut(s) 86
AoxI GGCC 3 cut(s) 162, 348, 367
ApeKI GCWGC 6 cut(s) 44, 53, 70, 86, 140, 152
ApoI RAATTY 2 cut(s) 284, 446
AsuC2I CCSGG 2 cut(s) 132, 352
AsuII TTCGAA 1 cut(s) 288
BaeGI GKGCMC 2 cut(s) 357, 476
BauI CACGAG 1 cut(s) 337
BbrPI CACGTG 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 344
BbvI GCAGC 6 cut(s) 56, 57, 65, 73, 127, 139
BceAI ACGGC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 157
BcnI CCSGG 2 cut(s) 132, 352
BcoDI GTCTC 2 cut(s) 99, 459
BfaI CTAG 1 cut(s) 194
BglI GCCNNNNNGGC 1 cut(s) 161
BisI GCNGC 7 cut(s) 45, 54, 71, 87, 141, 153, 162
BlsI GCNGC 7 cut(s) 46, 55, 72, 88, 142, 154, 163
Bme1390I CCNGG 3 cut(s) 132, 157, 352
BmrFI CCNGG 3 cut(s) 132, 157, 352
BmsI GCATC 3 cut(s) 18, 57, 65
Bpu14I TTCGAA 1 cut(s) 288
BpuMI CCSGG 2 cut(s) 132, 352
BsaAI YACGTR 1 cut(s) 258
BsaJI CCNNGG 3 cut(s) 156, 240, 345
BsaXI ACNNNNNCTCC 4 cut(s) 112, 142, 394, 424
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 351
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 3 cut(s) 156, 240, 345
BseLI CCNNNNNNNGG 2 cut(s) 134, 351
BseSI GKGCMC 2 cut(s) 357, 476
BseXI GCAGC 6 cut(s) 56, 57, 65, 73, 127, 139
BshFI GGCC 3 cut(s) 164, 350, 369
BsiHKAI GWGCWC 1 cut(s) 344
BsiSI CCGG 3 cut(s) 131, 213, 351
BslI CCNNNNNNNGG 2 cut(s) 134, 351
BsmAI GTCTC 2 cut(s) 99, 459
BsmBI CGTCTC 1 cut(s) 99
BsnI GGCC 3 cut(s) 164, 350, 369
Bsp119I TTCGAA 1 cut(s) 288
Bsp1286I GDGCHC 3 cut(s) 344, 357, 476
Bsp143I GATC 1 cut(s) 462
BspACI CCGC 3 cut(s) 47, 135, 161
BspANI GGCC 3 cut(s) 164, 350, 369
BspT104I TTCGAA 1 cut(s) 288
BssECI CCNNGG 3 cut(s) 156, 240, 345
BssMI GATC 1 cut(s) 462
BssNAI GTATAC 1 cut(s) 96
BssSI CACGAG 1 cut(s) 337
BssT1I CCWWGG 2 cut(s) 240, 345
Bst1107I GTATAC 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 337
Bst2UI CCWGG 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 403
BstAPI GCANNNNNTGC 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 258
BstBI TTCGAA 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 319
BstEII GGTNACC 1 cut(s) 235
BstKTI GATC 1 cut(s) 465
BstMAI GTCTC 2 cut(s) 99, 459
BstMBI GATC 1 cut(s) 462
BstMWI GCNNNNNNNGC 7 cut(s) 50, 53, 86, 149, 158, 161, 366
BstNI CCWGG 1 cut(s) 157
BstPI GGTNACC 1 cut(s) 235
BstSCI CCNGG 3 cut(s) 130, 155, 350
BstSLI GKGCMC 2 cut(s) 357, 476
BstV1I GCAGC 6 cut(s) 56, 57, 65, 73, 127, 139
BstZ17I GTATAC 1 cut(s) 96
BsuRI GGCC 3 cut(s) 164, 350, 369
BtgZI GCGATG 1 cut(s) 41
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 1 cut(s) 355
Cac8I GCNNGC 1 cut(s) 319
CaiI CAGNNNCTG 1 cut(s) 86
CviAII CATG 1 cut(s) 466
CviJI RGCY 7 cut(s) 86, 164, 174, 230, 350, 369, 380
CviKI_1 RGCY 7 cut(s) 86, 164, 174, 230, 350, 369, 380
DpnI GATC 1 cut(s) 464
DpnII GATC 1 cut(s) 462
EaeI YGGCCR 2 cut(s) 162, 348
Eam1104I CTCTTC 1 cut(s) 403
EarI CTCTTC 1 cut(s) 403
Eco130I CCWWGG 2 cut(s) 240, 345
Eco72I CACGTG 1 cut(s) 258
Eco91I GGTNACC 1 cut(s) 235
EcoO65I GGTNACC 1 cut(s) 235
EcoRI GAATTC 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 155
EcoT14I CCWWGG 2 cut(s) 240, 345
ErhI CCWWGG 2 cut(s) 240, 345
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 1 cut(s) 469
FaiI YATR 8 cut(s) 41, 96, 150, 171, 280, 282, 467, 484
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 1 cut(s) 465
FblI GTMKAC 1 cut(s) 95
Fnu4HI GCNGC 7 cut(s) 45, 54, 71, 87, 141, 153, 162
Fsp4HI GCNGC 7 cut(s) 45, 54, 71, 87, 141, 153, 162
FspBI CTAG 1 cut(s) 194
GluI GCNGC 7 cut(s) 45, 54, 71, 87, 141, 153, 162
HaeIII GGCC 3 cut(s) 164, 350, 369
HapII CCGG 3 cut(s) 131, 213, 351
Hin1II CATG 1 cut(s) 469
HinfI GANTC 1 cut(s) 407
HpaII CCGG 3 cut(s) 131, 213, 351
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 1 cut(s) 104
Hpy188III TCNNGA 1 cut(s) 337
Hpy8I GTNNAC 1 cut(s) 96
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 445
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 2 cut(s) 257, 428
HpyCH4V TGCA 3 cut(s) 89, 317, 469
HpyF10VI GCNNNNNNNGC 7 cut(s) 50, 53, 86, 149, 158, 161, 366
HpySE526I ACGT 2 cut(s) 257, 428
Hsp92II CATG 1 cut(s) 469
Kzo9I GATC 1 cut(s) 462
LmnI GCTCC 3 cut(s) 36, 365, 397
LpnPI CCDG 8 cut(s) 142, 144, 169, 226, 309, 364, 383, 455
Lsp1109I GCAGC 6 cut(s) 56, 57, 65, 73, 127, 139
LweI GCATC 3 cut(s) 18, 57, 65
MaeI CTAG 1 cut(s) 194
MaeII ACGT 2 cut(s) 257, 428
MaeIII GTNAC 2 cut(s) 235, 260
MalI GATC 1 cut(s) 464
MboI GATC 1 cut(s) 462
MboII GAAGA 4 cut(s) 230, 257, 302, 390
MhlI GDGCHC 3 cut(s) 344, 357, 476
MluCI AATT 3 cut(s) 284, 308, 446
MmeI TCCRAC 3 cut(s) 82, 98, 449
MnlI CCTC 4 cut(s) 138, 406, 442, 452
MseI TTAA 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 3 cut(s) 131, 213, 351
MspR9I CCNGG 3 cut(s) 132, 157, 352
MvaI CCWGG 1 cut(s) 157
MwoI GCNNNNNNNGC 7 cut(s) 50, 53, 86, 149, 158, 161, 366
NciI CCSGG 2 cut(s) 132, 352
NdeII GATC 1 cut(s) 462
NlaIII CATG 1 cut(s) 469
NspV TTCGAA 1 cut(s) 288
PfeI GAWTC 1 cut(s) 407
PkrI GCNGC 7 cut(s) 46, 55, 72, 88, 142, 154, 163
PmaCI CACGTG 1 cut(s) 258
PmlI CACGTG 1 cut(s) 258
Ppu21I YACGTR 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 155
PspCI CACGTG 1 cut(s) 258
PspEI GGTNACC 1 cut(s) 235
PspGI CCWGG 1 cut(s) 155
PstNI CAGNNNCTG 1 cut(s) 86
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 7 cut(s) 45, 54, 71, 87, 141, 153, 162
Sau3AI GATC 1 cut(s) 462
ScrFI CCNGG 3 cut(s) 132, 157, 352
SduI GDGCHC 3 cut(s) 344, 357, 476
SetI ASST 5 cut(s) 88, 176, 260, 347, 431
SfaNI GCATC 3 cut(s) 18, 57, 65
SfuI TTCGAA 1 cut(s) 288
Sse9I AATT 3 cut(s) 284, 308, 446
SsiI CCGC 3 cut(s) 47, 135, 161
SspI AATATT 1 cut(s) 10
SspMI CTAG 1 cut(s) 194
StyD4I CCNGG 3 cut(s) 130, 155, 350
StyI CCWWGG 2 cut(s) 240, 345
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 2 cut(s) 260, 431
TaqI TCGA 1 cut(s) 288
TasI AATT 3 cut(s) 284, 308, 446
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 1 cut(s) 362
TseI GCWGC 6 cut(s) 44, 53, 70, 86, 140, 152
TspDTI ATGAA 2 cut(s) 17, 297
TspRI CASTG 1 cut(s) 362
XapI RAATTY 2 cut(s) 284, 446
XmiI GTMKAC 1 cut(s) 95
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.