RchiOBHm_Chr2g0156091

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000974
Physical Location & Seq
Forward (+)
72824775 .. 72825720
946 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52493

Sequence Viewer

Length: 249 bp
ATGTTACGTGGAACAGAAGCTGAAAAATACAGAGTTGGAGGCGACTTGGGTTGGACTATGACTATCCCTCCCGGCGGCGCTGCTACTTATGCTTCATGGGCTTCAAAGCACACCTTTAAAGTTGACAAGGATACTCTAGGTAAAGTAGTACGCAGTACAACTTCCTACATTTTAATTACATTTTCAACTTTTGCTGGTTGTTTTTGTTTTCTGCAGTGTTTGACTTTAAAGCAGGAGAAAATGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

82

Amino Acids

9.06

Weight (kDa)

9.15

Isoelectric Point (pI)

28.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 75
AfaI GTAC 2 cut(s) 150, 157
AfiI CCNNNNNNNGG 1 cut(s) 74
AgsI TTSAA 2 cut(s) 105, 186
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
AlwNI CAGNNNCTG 1 cut(s) 20
ApeKI GCWGC 1 cut(s) 80
AspLEI GCGC 1 cut(s) 80
AsuC2I CCSGG 1 cut(s) 72
BbvI GCAGC 1 cut(s) 67
BciVI GTATCC 1 cut(s) 124
BcnI CCSGG 1 cut(s) 72
BfaI CTAG 1 cut(s) 137
BfmI CTRYAG 1 cut(s) 212
BfoI RGCGCY 1 cut(s) 81
BfuI GTATCC 1 cut(s) 124
BisI GCNGC 2 cut(s) 76, 81
BlsI GCNGC 2 cut(s) 77, 82
Bme1390I CCNGG 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 72
BsaAI YACGTR 1 cut(s) 8
BsaXI ACNNNNNCTCC 2 cut(s) 52, 82
Bsc4I CCNNNNNNNGG 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 67
BsiSI CCGG 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 74
BspACI CCGC 1 cut(s) 75
BspMAI CTGCAG 1 cut(s) 216
BstBAI YACGTR 1 cut(s) 8
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 1 cut(s) 80
BstMWI GCNNNNNNNGC 2 cut(s) 89, 98
BstSCI CCNGG 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 212
BstV1I GCAGC 1 cut(s) 67
BsuI GTATCC 1 cut(s) 124
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 221
CaiI CAGNNNCTG 1 cut(s) 20
CfoI GCGC 1 cut(s) 80
Csp6I GTAC 2 cut(s) 149, 156
CviAII CATG 1 cut(s) 96
CviJI RGCY 2 cut(s) 20, 101
CviKI_1 RGCY 2 cut(s) 20, 101
CviQI GTAC 2 cut(s) 149, 156
DraI TTTAAA 2 cut(s) 118, 228
FaeI CATG 1 cut(s) 99
FaiI YATR 3 cut(s) 59, 90, 97
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FatI CATG 1 cut(s) 95
Fnu4HI GCNGC 2 cut(s) 76, 81
Fsp4HI GCNGC 2 cut(s) 76, 81
FspBI CTAG 1 cut(s) 137
GlaI GCGC 1 cut(s) 79
GluI GCNGC 2 cut(s) 76, 81
HaeII RGCGCY 1 cut(s) 81
HapII CCGG 1 cut(s) 72
HhaI GCGC 1 cut(s) 80
Hin1II CATG 1 cut(s) 99
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HpaII CCGG 1 cut(s) 72
Hpy166II GTNNAC 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 124
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 1 cut(s) 214
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 98
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 1 cut(s) 99
HspAI GCGC 1 cut(s) 78
LpnPI CCDG 3 cut(s) 85, 180, 218
Lsp1109I GCAGC 1 cut(s) 67
MaeI CTAG 1 cut(s) 137
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 1 cut(s) 3
MluCI AATT 1 cut(s) 174
MmeI TCCRAC 2 cut(s) 16, 32
MnlI CCTC 2 cut(s) 32, 78
MseI TTAA 3 cut(s) 117, 173, 227
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 89, 98
NciI CCSGG 1 cut(s) 72
NlaIII CATG 1 cut(s) 99
PkrI GCNGC 2 cut(s) 77, 82
Ppu21I YACGTR 1 cut(s) 8
PstI CTGCAG 1 cut(s) 216
PstNI CAGNNNCTG 1 cut(s) 20
RsaI GTAC 2 cut(s) 150, 157
RsaNI GTAC 2 cut(s) 149, 156
SaqAI TTAA 3 cut(s) 117, 173, 227
SatI GCNGC 2 cut(s) 76, 81
ScrFI CCNGG 1 cut(s) 72
SetI ASST 4 cut(s) 10, 22, 116, 142
SfcI CTRYAG 1 cut(s) 212
SgeI CNNG 9 cut(s) 20, 58, 83, 84, 108, 139, 149, 207, 245
Sse9I AATT 1 cut(s) 174
SsiI CCGC 1 cut(s) 75
SspMI CTAG 1 cut(s) 137
StyD4I CCNGG 1 cut(s) 70
TaiI ACGT 1 cut(s) 10
TasI AATT 1 cut(s) 174
TatI WGTACW 1 cut(s) 155
TauI GCSGC 1 cut(s) 78
Tru1I TTAA 3 cut(s) 117, 173, 227
Tru9I TTAA 3 cut(s) 117, 173, 227
TscAI CASTG 1 cut(s) 221
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 84
TspRI CASTG 1 cut(s) 221
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.