Rh5BG404600

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000974
Physical Location & Seq
Forward (+)
65695226 .. 65707178
11953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG404600.1

Sequence Viewer

Length: 288 bp
ATGATGAGTATGAAGTATGTGATCGTGCTTGTCATAGCAATTGTAGCAATTGCAGAAGGCGCCGAGTACACTGTAGGAGACGACATGGGTTGGATGGTTCCTCCCACTCCCGACTATTATGCTTCATGGGTTTCCAAGTATTCTTTTGTGGAGAACGACACTCTAGTGTTTAACTTTGAAGAAGGAATGCATGACATCACTGTACTAACCAAGGAAGACTTTGACGCCTGCAACATGAAGAATCCCTTGTTTCAGTTCCCAAATCCAGGGGGAGTTACAGTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

95

Amino Acids

10.68

Weight (kDa)

4.09

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 31 - 87 1.8e-09 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AcyI GRCGYC 2 cut(s) 60, 225
AfaI GTAC 2 cut(s) 68, 204
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 1 cut(s) 179
AjnI CCWGG 1 cut(s) 265
AleI CACNNNNGTG 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 72
AspLEI GCGC 1 cut(s) 62
BanI GGYRCC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 222
BccI CCATC 1 cut(s) 88
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 72
BfoI RGCGCY 1 cut(s) 63
Bme1390I CCNGG 1 cut(s) 267
BmiI GGNNCC 2 cut(s) 61, 99
BmrFI CCNGG 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 222
BsaHI GRCGYC 2 cut(s) 60, 225
BsaJI CCNNGG 2 cut(s) 210, 266
BsaXI ACNNNNNCTCC 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 266
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 2 cut(s) 210, 266
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 266
BshNI GGYRCC 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 266
BsmAI GTCTC 1 cut(s) 72
BsmBI CGTCTC 1 cut(s) 72
BsmI GAATGC 1 cut(s) 192
Bsp143I GATC 1 cut(s) 21
BspLI GGNNCC 2 cut(s) 61, 99
BspT107I GGYRCC 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 210, 266
BssMI GATC 1 cut(s) 21
BssNI GRCGYC 2 cut(s) 60, 225
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 3 cut(s) 73, 202, 280
BstACI GRCGYC 2 cut(s) 60, 225
BstC8I GCNNGC 1 cut(s) 229
BstF5I GGATG 1 cut(s) 99
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 1 cut(s) 21
BstMWI GCNNNNNNNGC 2 cut(s) 44, 59
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 265
BstSFI CTRYAG 1 cut(s) 72
BstV2I GAAGAC 1 cut(s) 222
BtsCI GGATG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 69, 198
Cac8I GCNNGC 1 cut(s) 229
CfoI GCGC 1 cut(s) 62
CseI GACGC 1 cut(s) 233
Csp6I GTAC 2 cut(s) 67, 203
CviAII CATG 4 cut(s) 85, 126, 191, 235
CviQI GTAC 2 cut(s) 67, 203
DinI GGCGCC 1 cut(s) 61
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 210
EcoT22I ATGCAT 1 cut(s) 192
EgeI GGCGCC 1 cut(s) 61
EheI GGCGCC 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 210
Esp3I CGTCTC 1 cut(s) 72
FaeI CATG 4 cut(s) 88, 129, 194, 238
FaiI YATR 8 cut(s) 11, 18, 35, 86, 120, 127, 192, 236
FalI AAGNNNNNCTT 4 cut(s) 203, 235, 230, 262
FatI CATG 4 cut(s) 84, 125, 190, 234
FokI GGATG 1 cut(s) 106
FspBI CTAG 1 cut(s) 164
GlaI GCGC 1 cut(s) 61
HaeII RGCGCY 1 cut(s) 63
HgaI GACGC 1 cut(s) 233
HhaI GCGC 1 cut(s) 62
Hin1I GRCGYC 2 cut(s) 60, 225
Hin1II CATG 4 cut(s) 88, 129, 194, 238
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HinfI GANTC 1 cut(s) 241
Hpy166II GTNNAC 1 cut(s) 69
Hpy188III TCNNGA 1 cut(s) 110
Hpy8I GTNNAC 1 cut(s) 69
HpyAV CCTTC 2 cut(s) 50, 176
HpyCH4III ACNGT 3 cut(s) 73, 202, 280
HpyCH4V TGCA 3 cut(s) 53, 190, 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 59
Hsp92I GRCGYC 2 cut(s) 60, 225
Hsp92II CATG 4 cut(s) 88, 129, 194, 238
HspAI GCGC 1 cut(s) 60
KasI GGCGCC 1 cut(s) 59
Kzo9I GATC 1 cut(s) 21
LpnPI CCDG 3 cut(s) 241, 252, 279
MaeI CTAG 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 274
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 3 cut(s) 191, 227, 250
MfeI CAATTG 2 cut(s) 39, 48
MluCI AATT 2 cut(s) 39, 48
Mly113I GGCGCC 1 cut(s) 60
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 1 cut(s) 111
Mph1103I ATGCAT 1 cut(s) 192
MseI TTAA 1 cut(s) 171
MslI CAYNNNNRTG 1 cut(s) 164
MspR9I CCNGG 1 cut(s) 267
MunI CAATTG 2 cut(s) 39, 48
Mva1269I GAATGC 1 cut(s) 192
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 2 cut(s) 44, 59
NarI GGCGCC 1 cut(s) 60
NdeII GATC 1 cut(s) 21
NlaIII CATG 4 cut(s) 88, 129, 194, 238
NlaIV GGNNCC 2 cut(s) 61, 99
NmeAIII GCCGAG 1 cut(s) 88
NsiI ATGCAT 1 cut(s) 192
OliI CACNNNNGTG 1 cut(s) 164
PctI GAATGC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 241
PluTI GGCGCC 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 2 cut(s) 61, 99
RsaI GTAC 2 cut(s) 68, 204
RsaNI GTAC 2 cut(s) 67, 203
RseI CAYNNNNRTG 1 cut(s) 164
SaqAI TTAA 1 cut(s) 171
Sau3AI GATC 1 cut(s) 21
ScrFI CCNGG 1 cut(s) 267
SfcI CTRYAG 1 cut(s) 72
SfoI GGCGCC 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 164
Sse9I AATT 2 cut(s) 39, 48
SspDI GGCGCC 1 cut(s) 59
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 3 cut(s) 73, 202, 280
TasI AATT 2 cut(s) 39, 48
TatI WGTACW 2 cut(s) 66, 202
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 2 cut(s) 76, 205
TspDTI ATGAA 3 cut(s) 26, 114, 251
TspRI CASTG 2 cut(s) 76, 205
XspI CTAG 1 cut(s) 164
Zsp2I ATGCAT 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.