Rh2BG034600

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000974
Physical Location & Seq
Reverse (-)
2396009 .. 2396683
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG034600.1

Sequence Viewer

Length: 471 bp
ATGAATATGAAGTATGTGTTCGTGCTTGTCATAGCAATCGCAGCCACCGCAGAAGGCGCAGAATACACCGTAGGAGACGACATGGGTTGGATGGTTCCTCCCACTCCCGACTATTATGCTTCATGGGTTTCCAAGTATTACTTTGTGGAGAATGATACTCTAGTGTTTAACTTTGAACAAGGAATACATGACATCACTGTACTAACCAAGGAAGACTTCGACGCCTGCAACATGAAGAATCCCTTGTTTCAATCCCCGGAACCAGGTGAAGTTATGGTTATGGAGAGCGACACATTTTACTTCACGTGCAGCTTTGGTCAGCACTGCGCTAATGGGCAAAAGTTTGCCATTTATTTTGCCTCTGCACCTTTGCCTCCCAGTCCAAGTCCGTGTCCAAGTGAATCTGCTACTGCTGATCAATCTACGGAGTCCCGGCCGTTCAAGTTTGTATCGGCAAAGATGGGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

156

Amino Acids

17.34

Weight (kDa)

4.32

Isoelectric Point (pI)

53.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 31 - 113 4.5e-13 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 48
AcoI YGGCCR 1 cut(s) 434
AcvI CACGTG 1 cut(s) 306
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 3 cut(s) 176, 251, 442
AjnI CCWGG 1 cut(s) 262
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 1 cut(s) 312
AluI AGCT 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 69
AoxI GGCC 1 cut(s) 434
ApeKI GCWGC 2 cut(s) 41, 309
AspLEI GCGC 2 cut(s) 59, 329
AsuC2I CCSGG 2 cut(s) 257, 433
AsuHPI GGTGA 1 cut(s) 278
BaeI ACNNNNGTAYC 2 cut(s) 147, 180
BbrPI CACGTG 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 219
BbvI GCAGC 2 cut(s) 53, 321
BccI CCATC 2 cut(s) 85, 454
BceAI ACGGC 1 cut(s) 421
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BciT130I CCWGG 1 cut(s) 264
BclI TGATCA 1 cut(s) 415
BcnI CCSGG 2 cut(s) 257, 433
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 2 cut(s) 161, 469
BisI GCNGC 2 cut(s) 42, 310
BlsI GCNGC 2 cut(s) 43, 311
Bme1390I CCNGG 3 cut(s) 257, 264, 433
BmiI GGNNCC 2 cut(s) 96, 261
BmrFI CCNGG 3 cut(s) 257, 264, 433
BmrI ACTGGG 1 cut(s) 372
BmuI ACTGGG 1 cut(s) 372
BpiI GAAGAC 1 cut(s) 219
BpuMI CCSGG 2 cut(s) 257, 433
BsaAI YACGTR 1 cut(s) 306
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 207, 255
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 378
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 2 cut(s) 207, 255
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 263
BseNI ACTGG 1 cut(s) 378
BseX3I CGGCCG 1 cut(s) 434
BseXI GCAGC 2 cut(s) 53, 321
BsgI GTGCAG 2 cut(s) 328, 348
Bsh1285I CGRYCG 1 cut(s) 437
BshFI GGCC 1 cut(s) 436
BsiEI CGRYCG 1 cut(s) 437
BsiSI CCGG 2 cut(s) 257, 433
BslFI GGGAC 1 cut(s) 415
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 69
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 415
BsnI GGCC 1 cut(s) 436
Bsp143I GATC 1 cut(s) 415
BspACI CCGC 1 cut(s) 48
BspANI GGCC 1 cut(s) 436
BspLI GGNNCC 2 cut(s) 96, 261
BsrI ACTGG 1 cut(s) 378
BssECI CCNNGG 2 cut(s) 207, 255
BssMI GATC 1 cut(s) 415
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 2 cut(s) 70, 199
BstACI GRCGYC 1 cut(s) 222
BstBAI YACGTR 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 226
BstF5I GGATG 1 cut(s) 96
BstHHI GCGC 2 cut(s) 59, 329
BstKTI GATC 1 cut(s) 418
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 1 cut(s) 415
BstMCI CGRYCG 1 cut(s) 437
BstMWI GCNNNNNNNGC 3 cut(s) 41, 47, 56
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 3 cut(s) 255, 262, 431
BstV1I GCAGC 2 cut(s) 53, 321
BstV2I GAAGAC 1 cut(s) 219
BstZI CGGCCG 1 cut(s) 434
BsuRI GGCC 1 cut(s) 436
BtsCI GGATG 1 cut(s) 96
BtsI GCAGTG 1 cut(s) 322
BtsIMutI CAGTG 2 cut(s) 195, 322
Cac8I GCNNGC 1 cut(s) 226
CfoI GCGC 2 cut(s) 59, 329
CseI GACGC 1 cut(s) 230
CsiI ACCWGGT 1 cut(s) 262
Csp6I GTAC 1 cut(s) 200
CviAII CATG 4 cut(s) 82, 123, 188, 232
CviJI RGCY 3 cut(s) 44, 312, 436
CviKI_1 RGCY 3 cut(s) 44, 312, 436
CviQI GTAC 1 cut(s) 200
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
EaeI YGGCCR 1 cut(s) 434
EagI CGGCCG 1 cut(s) 434
EclXI CGGCCG 1 cut(s) 434
Eco130I CCWWGG 1 cut(s) 207
Eco52I CGGCCG 1 cut(s) 434
Eco72I CACGTG 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 4 cut(s) 85, 126, 191, 235
FalI AAGNNNNNCTT 6 cut(s) 125, 157, 200, 232, 227, 259
FaqI GGGAC 1 cut(s) 415
FatI CATG 4 cut(s) 81, 122, 187, 231
FbaI TGATCA 1 cut(s) 415
Fnu4HI GCNGC 2 cut(s) 42, 310
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 2 cut(s) 42, 310
FspBI CTAG 2 cut(s) 161, 469
GlaI GCGC 2 cut(s) 58, 328
GluI GCNGC 2 cut(s) 42, 310
HaeIII GGCC 1 cut(s) 436
HapII CCGG 2 cut(s) 257, 433
HgaI GACGC 1 cut(s) 230
HhaI GCGC 2 cut(s) 59, 329
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 4 cut(s) 85, 126, 191, 235
Hin6I GCGC 2 cut(s) 57, 327
HinP1I GCGC 2 cut(s) 57, 327
HinfI GANTC 3 cut(s) 238, 401, 428
HpaII CCGG 2 cut(s) 257, 433
HphI GGTGA 1 cut(s) 278
Hpy188III TCNNGA 1 cut(s) 107
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 2 cut(s) 70, 199
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 3 cut(s) 228, 309, 365
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 47, 56
HpySE526I ACGT 1 cut(s) 305
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 4 cut(s) 85, 126, 191, 235
HspAI GCGC 2 cut(s) 57, 327
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 1 cut(s) 415
LpnPI CCDG 6 cut(s) 238, 249, 270, 276, 391, 446
Lsp1109I GCAGC 2 cut(s) 53, 321
MabI ACCWGGT 1 cut(s) 262
MaeI CTAG 2 cut(s) 161, 469
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 1 cut(s) 464
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MboII GAAGA 2 cut(s) 224, 247
MlyI GAGTC 1 cut(s) 437
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 3 cut(s) 108, 370, 384
MseI TTAA 1 cut(s) 168
MspI CCGG 2 cut(s) 257, 433
MspR9I CCNGG 3 cut(s) 257, 264, 433
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 41, 47, 56
NciI CCSGG 2 cut(s) 257, 433
NdeII GATC 1 cut(s) 415
NlaIII CATG 4 cut(s) 85, 126, 191, 235
NlaIV GGNNCC 2 cut(s) 96, 261
PfeI GAWTC 2 cut(s) 238, 401
PkrI GCNGC 2 cut(s) 43, 311
PleI GAGTC 1 cut(s) 436
PmaCI CACGTG 1 cut(s) 306
PmlI CACGTG 1 cut(s) 306
PpsI GAGTC 1 cut(s) 436
Ppu21I YACGTR 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 262
PspCI CACGTG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 2 cut(s) 96, 261
PsrI GAACNNNNNNTAC 2 cut(s) 168, 200
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 2 cut(s) 42, 310
Sau3AI GATC 1 cut(s) 415
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 3 cut(s) 257, 264, 433
SetI ASST 4 cut(s) 268, 308, 314, 370
SexAI ACCWGGT 1 cut(s) 262
SsiI CCGC 1 cut(s) 48
SspMI CTAG 2 cut(s) 161, 469
StyD4I CCNGG 3 cut(s) 255, 262, 431
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 70, 199
TaiI ACGT 1 cut(s) 308
TaqI TCGA 1 cut(s) 219
TatI WGTACW 1 cut(s) 199
TfiI GAWTC 2 cut(s) 238, 401
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 2 cut(s) 202, 329
TseI GCWGC 2 cut(s) 41, 309
TspDTI ATGAA 4 cut(s) 17, 23, 111, 248
TspGWI ACGGA 2 cut(s) 378, 440
TspRI CASTG 2 cut(s) 202, 329
XspI CTAG 2 cut(s) 161, 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.