Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000974

Physical Location & Seq

Genomic Coordinates Reverse (-)

2566311 .. 2566879

Gene Structure 569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G002810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAATATGAAGTATGTGATCGTGCTTGTCATAGCAATTGCAGCAATCGCAGAAGGCGCAATATACACTGTAGGAGACGACATGGGCTGGATGGTTCCTCCCACTCCCGACTATTATGCTTCATGGGTTTCCAAGTATTACTTTGTGGAGAACGATACTATAGTGTTTAACTTTGACGAAGGACAGCATGACATCACTGTACTAACTAAGGAAGACTTCGACACCTGCAACATGACGAATCCCTTGTTTCAAACCCCAGAACCAGGTGCAGTTTCGGTTGAGGCGAGCGGCACGTTTTACTTCACGTGCAGCTTTGGTCAGCACTGCTCTAAAGGGCAAAAGTTCGCCATTTATTTTGCCTCTGCACCTTTGCCTCCCAGTCCGAGTCCGAGTGCATCTGCTGCTGCTGATCAATCTCTGGAGACCCGGCTGTTCAAGTTTGTGTCGGAAAAGAAGGGTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

154

Amino Acids

16.94

Weight (kDa)

4.52

Isoelectric Point (pI)

30.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	31 - 113	1.7e-13	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000974)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02910 FvH4_1g02970 FvH4_6g40671
malus_domestica	MD02G1028900.v1.1 MD02G1029100.v1.1 MD15G1170500.v1.1
prunus_persica	Prupe.7G245800_v2.0.a1 Prupe.7G245900_v2.0.a1 Prupe.7G246100_v2.0.a1
pyrus_communis	pycom02g02370 pycom02g02380 pycom02g02390 pycom02g02400 pycom15g15200
rosa_chinensis	RchiOBHm_Chr2g0088061 RchiOBHm_Chr2g0088081 RchiOBHm_Chr2g0156091 RchiOBHm_Chr2g0156121 RchiOBHm_Chr2g0156131 RchiOBHm_Chr5g0060121 RchiOBHm_Chr5g0060181
rosa_multiflora	Rmu_co8398493.1_g000001 Rmu_sc0000260.1_g000020 Rmu_sc0000493.1_g000045 Rmu_sc0003275.1_g000013 Rmu_sc0003275.1_g000020 Rmu_sc0003275.1_g000042 Rmu_sc0011922.1_g000011
rosa_roxburghii	Rroxscaffold_1G00020520 Rroxscaffold_1G00020540 Rroxscaffold_2G00152970 Rroxscaffold_2G00152990 Rroxscaffold_2G00153000 Rroxscaffold_2G00153020
rosa_rugosa	Rorug01G0480500 Rorug01G0480600 Rorug01G0480800 Rorug02G0451600 Rorug02G0451600 Rorug05G0328200
rosa_samantha	Rh2AG035400 Rh2AG035700 Rh2BG034400 Rh2BG034600 Rh2BG034900 Rh2BG529600 Rh2CG035600 Rh2CG036000 Rh2CG503200 Rh2DG035100 Rh2DG035500 Rh5AG392000 Rh5AG392100 Rh5BG404500 Rh5BG404600 Rh5CG428200 Rh5CG428600 Rh5DG420300
rosa_wichuraiana	Rw2G002780 Rw2G002790 Rw2G002810 Rw5G036960 Rw5G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	233
Acc36I	ACCTGC	1 cut(s)	233
AccBSI	CCGCTC	1 cut(s)	288
AciI	CCGC	1 cut(s)	288
AcvI	CACGTG	1 cut(s)	306
AfaI	GTAC	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	251, 436
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	1 cut(s)	312
AluI	AGCT	1 cut(s)	312
Alw26I	GTCTC	2 cut(s)	69, 416
ApeKI	GCWGC	4 cut(s)	41, 309, 401, 404
AspLEI	GCGC	1 cut(s)	59
AsuC2I	CCSGG	1 cut(s)	427
BaeI	ACNNNNGTAYC	2 cut(s)	147, 180
BbrPI	CACGTG	1 cut(s)	306
BbsI	GAAGAC	1 cut(s)	219
BbvI	GCAGC	4 cut(s)	53, 321, 388, 391
BccI	CCATC	1 cut(s)	85
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BciT130I	CCWGG	1 cut(s)	264
BclI	TGATCA	1 cut(s)	409
BcnI	CCSGG	1 cut(s)	427
BcoDI	GTCTC	2 cut(s)	69, 416
BfaI	CTAG	1 cut(s)	463
BfmI	CTRYAG	2 cut(s)	69, 159
BfuAI	ACCTGC	1 cut(s)	233
BisI	GCNGC	5 cut(s)	42, 289, 310, 402, 405
BlsI	GCNGC	5 cut(s)	43, 290, 311, 403, 406
Bme1390I	CCNGG	2 cut(s)	264, 427
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	2 cut(s)	264, 427
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	1 cut(s)	404
BmuI	ACTGGG	1 cut(s)	372
BpiI	GAAGAC	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	440
BpuMI	CCSGG	1 cut(s)	427
BsaAI	YACGTR	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	416
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseNI	ACTGG	1 cut(s)	378
BseXI	GCAGC	4 cut(s)	53, 321, 388, 391
BsgI	GTGCAG	3 cut(s)	288, 328, 348
BsiSI	CCGG	1 cut(s)	427
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	2 cut(s)	69, 416
BsmBI	CGTCTC	1 cut(s)	69
Bso31I	GGTCTC	1 cut(s)	416
Bsp143I	GATC	2 cut(s)	18, 409
BspACI	CCGC	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	96
BspMI	ACCTGC	1 cut(s)	233
BspTNI	GGTCTC	1 cut(s)	416
BsrBI	CCGCTC	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	378
BssMI	GATC	2 cut(s)	18, 409
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	70, 199
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstBAI	YACGTR	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	2 cut(s)	21, 412
BstMAI	GTCTC	2 cut(s)	69, 416
BstMBI	GATC	2 cut(s)	18, 409
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 47, 56, 401
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	2 cut(s)	262, 425
BstSFI	CTRYAG	2 cut(s)	69, 159
BstV1I	GCAGC	4 cut(s)	53, 321, 388, 391
BstV2I	GAAGAC	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	96
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	3 cut(s)	66, 195, 322
BveI	ACCTGC	1 cut(s)	233
Cac8I	GCNNGC	1 cut(s)	286
CfoI	GCGC	1 cut(s)	59
CsiI	ACCWGGT	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	4 cut(s)	82, 123, 188, 232
CviJI	RGCY	3 cut(s)	87, 312, 430
CviKI_1	RGCY	3 cut(s)	87, 312, 430
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	2 cut(s)	20, 411
DpnII	GATC	2 cut(s)	18, 409
Eco31I	GGTCTC	1 cut(s)	416
Eco72I	CACGTG	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	262
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	4 cut(s)	85, 126, 191, 235
FalI	AAGNNNNNCTT	4 cut(s)	125, 157, 200, 232
FatI	CATG	4 cut(s)	81, 122, 187, 231
FbaI	TGATCA	1 cut(s)	409
Fnu4HI	GCNGC	5 cut(s)	42, 289, 310, 402, 405
FokI	GGATG	1 cut(s)	103
Fsp4HI	GCNGC	5 cut(s)	42, 289, 310, 402, 405
FspBI	CTAG	1 cut(s)	463
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	5 cut(s)	42, 289, 310, 402, 405
GsuI	CTGGAG	1 cut(s)	440
HapII	CCGG	1 cut(s)	427
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	4 cut(s)	85, 126, 191, 235
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HinfI	GANTC	2 cut(s)	238, 385
HpaII	CCGG	1 cut(s)	427
Hpy188I	TCNGA	3 cut(s)	384, 390, 448
Hpy188III	TCNNGA	2 cut(s)	107, 419
HpyAV	CCTTC	3 cut(s)	47, 173, 448
HpyCH4III	ACNGT	2 cut(s)	70, 199
HpyCH4IV	ACGT	2 cut(s)	293, 305
HpyCH4V	TGCA	6 cut(s)	41, 228, 269, 309, 365, 395
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 47, 56, 401
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	2 cut(s)	293, 305
Hsp92II	CATG	4 cut(s)	85, 126, 191, 235
HspAI	GCGC	1 cut(s)	57
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	2 cut(s)	18, 409
LpnPI	CCDG	8 cut(s)	73, 238, 249, 270, 276, 391, 404, 440
Lsp1109I	GCAGC	4 cut(s)	53, 321, 388, 391
LweI	GCATC	1 cut(s)	404
MabI	ACCWGGT	1 cut(s)	262
MaeI	CTAG	1 cut(s)	463
MaeII	ACGT	2 cut(s)	293, 305
MaeIII	GTNAC	1 cut(s)	458
MalI	GATC	2 cut(s)	20, 411
MbiI	CCGCTC	1 cut(s)	288
MboI	GATC	2 cut(s)	18, 409
MboII	GAAGA	1 cut(s)	224
MfeI	CAATTG	1 cut(s)	36
MluCI	AATT	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	394
MmeI	TCCRAC	1 cut(s)	426
MnlI	CCTC	4 cut(s)	108, 274, 370, 384
MseI	TTAA	1 cut(s)	168
MspI	CCGG	1 cut(s)	427
MspR9I	CCNGG	2 cut(s)	264, 427
MunI	CAATTG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	4 cut(s)	41, 47, 56, 401
NciI	CCSGG	1 cut(s)	427
NdeII	GATC	2 cut(s)	18, 409
NlaIII	CATG	4 cut(s)	85, 126, 191, 235
NlaIV	GGNNCC	1 cut(s)	96
PaqCI	CACCTGC	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	5 cut(s)	43, 290, 311, 403, 406
PleI	GAGTC	1 cut(s)	393
PmaCI	CACGTG	1 cut(s)	306
PmlI	CACGTG	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	393
Ppu21I	YACGTR	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	262
PspCI	CACGTG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	96
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	5 cut(s)	42, 289, 310, 402, 405
Sau3AI	GATC	2 cut(s)	18, 409
SchI	GAGTC	1 cut(s)	394
ScrFI	CCNGG	2 cut(s)	264, 427
SetI	ASST	6 cut(s)	227, 268, 296, 308, 314, 370
SexAI	ACCWGGT	1 cut(s)	262
SfaNI	GCATC	1 cut(s)	404
SfcI	CTRYAG	2 cut(s)	69, 159
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	1 cut(s)	288
SspMI	CTAG	1 cut(s)	463
StyD4I	CCNGG	2 cut(s)	262, 425
TaaI	ACNGT	2 cut(s)	70, 199
TaiI	ACGT	2 cut(s)	296, 308
TaqI	TCGA	1 cut(s)	219
TasI	AATT	1 cut(s)	36
TatI	WGTACW	1 cut(s)	199
TauI	GCSGC	1 cut(s)	291
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	3 cut(s)	73, 202, 329
TseI	GCWGC	4 cut(s)	41, 309, 401, 404
TspDTI	ATGAA	3 cut(s)	17, 23, 111
TspRI	CASTG	3 cut(s)	73, 202, 329
XspI	CTAG	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.